Gchil5716.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5716.t2
Unique NameGchil5716.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1014933..1016222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME064CT
PFAMsChorismate_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00586
KEGG koko:K01736
KEGG ReactionR01714
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue6.49e-205
EggNOG OGsCOG0082@1|root,KOG4492@2759|Eukaryota
EC4.2.3.5
Descriptionchorismate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5716Gchil5716Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1014933..1016222 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5716.t2.stop1Gchil5716.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1014933..1014935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5716.t2.CDS1Gchil5716.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1014933..1016222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5716.t2.exon1Gchil5716.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1014933..1016222 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5716.t2.start1Gchil5716.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1016220..1016222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5716.t2Gchil5716.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1014933..1016222 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5716.t2 ID=Gchil5716.t2|Name=Gchil5716.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=430bp
MSAFVQCSIAPSSFPGSALRIQYEAVKPRQARRSRRIIMGLGNSFGRVFR
ISTWGESHGGGVGVTVDGCPPRLPLHRDEIQHDLDRRRPGQSRIVTPRNE
PDAVEILSGVVDGITIGTPIAMLVRNKDQRSQDYDTMAVSYRPSHADAAY
DAKYGIRAVAGGGRSSARETIGRVAAGAVARKILKMYAGVDIVGYVKRVR
DIEAPLVNPTTVTMEQVDSNIIRCPDEVAAEKMIAYVDEIRKSGNSVGGT
IEVVARNVPAGLGSPVFDKLEADLAKACMSLPASKGFEIGSGFGGTMLTG
IEHNDEFYIDDDGRTRTVTNRSGGVQGGISNGEPIVIRVAFKPTSTIGRI
QKTVTRGGEETELRGKGRHDPCVLPRAVPMVESMVALVLADHLMQQVAQN
SITPIREEDAPNPLGPKPVPGSMTLNTTS*
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spliced messenger RNA

>Gchil5716.t2 ID=Gchil5716.t2|Name=Gchil5716.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000015_pilon:1014933..1016222- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCGTTTGTTCAATGTTCTATTGCGCCGAGCTCATTCCCCGGGAG
TGCTTTACGAATCCAATATGAAGCTGTCAAACCACGTCAAGCACGGCGAT
CCCGACGAATCATTATGGGTCTGGGAAATTCGTTTGGCCGCGTCTTTAGG
ATTAGCACCTGGGGTGAGAGTCACGGAGGAGGAGTTGGTGTAACTGTCGA
TGGATGCCCCCCGCGACTCCCGTTGCATAGGGATGAAATTCAGCACGATC
TTGATCGCCGTCGACCAGGGCAGAGCCGCATTGTTACCCCCAGGAACGAG
CCTGACGCTGTTGAAATTCTGTCTGGTGTCGTTGATGGAATTACAATTGG
AACACCCATTGCAATGCTTGTTCGCAATAAAGATCAACGTAGTCAAGACT
ATGATACAATGGCTGTTTCCTACCGTCCGTCACATGCTGATGCAGCATAT
GACGCCAAGTATGGAATTCGAGCCGTTGCTGGCGGTGGGCGGTCTTCTGC
GAGAGAAACGATTGGACGAGTGGCAGCTGGAGCCGTTGCGCGAAAAATAT
TGAAGATGTATGCGGGTGTCGACATAGTAGGTTATGTAAAGCGTGTCCGC
GACATCGAAGCACCTTTGGTCAATCCAACCACTGTCACTATGGAACAAGT
GGACTCCAATATTATCCGATGCCCCGATGAAGTTGCGGCAGAGAAGATGA
TTGCCTACGTTGATGAAATTCGCAAGTCGGGGAATAGCGTTGGAGGAACT
ATTGAAGTTGTAGCAAGAAACGTACCCGCTGGTTTGGGCTCTCCCGTTTT
TGATAAGCTAGAGGCGGATCTAGCGAAGGCGTGCATGAGTCTGCCGGCTT
CCAAGGGTTTCGAAATCGGTAGCGGTTTTGGGGGGACTATGCTCACAGGC
ATCGAGCATAATGACGAGTTTTACATTGACGATGACGGAAGAACGAGAAC
TGTTACGAATCGAAGTGGAGGCGTACAAGGTGGAATAAGCAATGGAGAAC
CAATCGTAATCAGGGTGGCATTCAAGCCCACGAGCACTATTGGGAGGATT
CAGAAGACAGTTACACGAGGAGGAGAAGAGACTGAACTGAGAGGGAAAGG
CCGACATGATCCATGTGTTTTGCCGAGAGCAGTTCCAATGGTCGAGTCCA
TGGTAGCGTTGGTTCTAGCAGATCATCTTATGCAACAAGTAGCACAAAAC
AGCATCACACCGATTCGCGAAGAAGATGCACCCAATCCGCTTGGACCCAA
ACCAGTCCCTGGCTCTATGACATTGAATACTACTAGCTGA
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protein sequence of Gchil5716.t2

>Gchil5716.t2 ID=Gchil5716.t2|Name=Gchil5716.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=430bp
MSAFVQCSIAPSSFPGSALRIQYEAVKPRQARRSRRIIMGLGNSFGRVFR
ISTWGESHGGGVGVTVDGCPPRLPLHRDEIQHDLDRRRPGQSRIVTPRNE
PDAVEILSGVVDGITIGTPIAMLVRNKDQRSQDYDTMAVSYRPSHADAAY
DAKYGIRAVAGGGRSSARETIGRVAAGAVARKILKMYAGVDIVGYVKRVR
DIEAPLVNPTTVTMEQVDSNIIRCPDEVAAEKMIAYVDEIRKSGNSVGGT
IEVVARNVPAGLGSPVFDKLEADLAKACMSLPASKGFEIGSGFGGTMLTG
IEHNDEFYIDDDGRTRTVTNRSGGVQGGISNGEPIVIRVAFKPTSTIGRI
QKTVTRGGEETELRGKGRHDPCVLPRAVPMVESMVALVLADHLMQQVAQN
SITPIREEDAPNPLGPKPVPGSMTLNTTS*
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mRNA from alignment at tig00000015_pilon:1014933..1016222-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5716.t2 ID=Gchil5716.t2|Name=Gchil5716.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000015_pilon:1014933..1016222- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCGTTTGTTCAATGTTCTATTGCGCCGAGCTCATTCCCCGGGAG
TGCTTTACGAATCCAATATGAAGCTGTCAAACCACGTCAAGCACGGCGAT
CCCGACGAATCATTATGGGTCTGGGAAATTCGTTTGGCCGCGTCTTTAGG
ATTAGCACCTGGGGTGAGAGTCACGGAGGAGGAGTTGGTGTAACTGTCGA
TGGATGCCCCCCGCGACTCCCGTTGCATAGGGATGAAATTCAGCACGATC
TTGATCGCCGTCGACCAGGGCAGAGCCGCATTGTTACCCCCAGGAACGAG
CCTGACGCTGTTGAAATTCTGTCTGGTGTCGTTGATGGAATTACAATTGG
AACACCCATTGCAATGCTTGTTCGCAATAAAGATCAACGTAGTCAAGACT
ATGATACAATGGCTGTTTCCTACCGTCCGTCACATGCTGATGCAGCATAT
GACGCCAAGTATGGAATTCGAGCCGTTGCTGGCGGTGGGCGGTCTTCTGC
GAGAGAAACGATTGGACGAGTGGCAGCTGGAGCCGTTGCGCGAAAAATAT
TGAAGATGTATGCGGGTGTCGACATAGTAGGTTATGTAAAGCGTGTCCGC
GACATCGAAGCACCTTTGGTCAATCCAACCACTGTCACTATGGAACAAGT
GGACTCCAATATTATCCGATGCCCCGATGAAGTTGCGGCAGAGAAGATGA
TTGCCTACGTTGATGAAATTCGCAAGTCGGGGAATAGCGTTGGAGGAACT
ATTGAAGTTGTAGCAAGAAACGTACCCGCTGGTTTGGGCTCTCCCGTTTT
TGATAAGCTAGAGGCGGATCTAGCGAAGGCGTGCATGAGTCTGCCGGCTT
CCAAGGGTTTCGAAATCGGTAGCGGTTTTGGGGGGACTATGCTCACAGGC
ATCGAGCATAATGACGAGTTTTACATTGACGATGACGGAAGAACGAGAAC
TGTTACGAATCGAAGTGGAGGCGTACAAGGTGGAATAAGCAATGGAGAAC
CAATCGTAATCAGGGTGGCATTCAAGCCCACGAGCACTATTGGGAGGATT
CAGAAGACAGTTACACGAGGAGGAGAAGAGACTGAACTGAGAGGGAAAGG
CCGACATGATCCATGTGTTTTGCCGAGAGCAGTTCCAATGGTCGAGTCCA
TGGTAGCGTTGGTTCTAGCAGATCATCTTATGCAACAAGTAGCACAAAAC
AGCATCACACCGATTCGCGAAGAAGATGCACCCAATCCGCTTGGACCCAA
ACCAGTCCCTGGCTCTATGACATTGAATACTACTAGCTGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1014933..1016222-

>Gchil5716.t2 ID=Gchil5716.t2|Name=Gchil5716.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000015_pilon:1014933..1016222- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCGTTTGTTCAATGTTCTATTGCGCCGAGCTCATTCCCCGGGAG
TGCTTTACGAATCCAATATGAAGCTGTCAAACCACGTCAAGCACGGCGAT
CCCGACGAATCATTATGGGTCTGGGAAATTCGTTTGGCCGCGTCTTTAGG
ATTAGCACCTGGGGTGAGAGTCACGGAGGAGGAGTTGGTGTAACTGTCGA
TGGATGCCCCCCGCGACTCCCGTTGCATAGGGATGAAATTCAGCACGATC
TTGATCGCCGTCGACCAGGGCAGAGCCGCATTGTTACCCCCAGGAACGAG
CCTGACGCTGTTGAAATTCTGTCTGGTGTCGTTGATGGAATTACAATTGG
AACACCCATTGCAATGCTTGTTCGCAATAAAGATCAACGTAGTCAAGACT
ATGATACAATGGCTGTTTCCTACCGTCCGTCACATGCTGATGCAGCATAT
GACGCCAAGTATGGAATTCGAGCCGTTGCTGGCGGTGGGCGGTCTTCTGC
GAGAGAAACGATTGGACGAGTGGCAGCTGGAGCCGTTGCGCGAAAAATAT
TGAAGATGTATGCGGGTGTCGACATAGTAGGTTATGTAAAGCGTGTCCGC
GACATCGAAGCACCTTTGGTCAATCCAACCACTGTCACTATGGAACAAGT
GGACTCCAATATTATCCGATGCCCCGATGAAGTTGCGGCAGAGAAGATGA
TTGCCTACGTTGATGAAATTCGCAAGTCGGGGAATAGCGTTGGAGGAACT
ATTGAAGTTGTAGCAAGAAACGTACCCGCTGGTTTGGGCTCTCCCGTTTT
TGATAAGCTAGAGGCGGATCTAGCGAAGGCGTGCATGAGTCTGCCGGCTT
CCAAGGGTTTCGAAATCGGTAGCGGTTTTGGGGGGACTATGCTCACAGGC
ATCGAGCATAATGACGAGTTTTACATTGACGATGACGGAAGAACGAGAAC
TGTTACGAATCGAAGTGGAGGCGTACAAGGTGGAATAAGCAATGGAGAAC
CAATCGTAATCAGGGTGGCATTCAAGCCCACGAGCACTATTGGGAGGATT
CAGAAGACAGTTACACGAGGAGGAGAAGAGACTGAACTGAGAGGGAAAGG
CCGACATGATCCATGTGTTTTGCCGAGAGCAGTTCCAATGGTCGAGTCCA
TGGTAGCGTTGGTTCTAGCAGATCATCTTATGCAACAAGTAGCACAAAAC
AGCATCACACCGATTCGCGAAGAAGATGCACCCAATCCGCTTGGACCCAA
ACCAGTCCCTGGCTCTATGACATTGAATACTACTAGCTGA
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