Gchil571.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil571.t1
Unique Name	Gchil571.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	424

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:289686..290957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK117CT
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14803,ko:K17506
Evalue	7.7e-27
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil571	Gchil571	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 289686..290957 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil571.t1.start1	Gchil571.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 289686..289688 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil571.t1.CDS1	Gchil571.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 289686..290957 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil571.t1.exon1	Gchil571.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 289686..290957 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil571.t1.stop1	Gchil571.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 290955..290957 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil571.t1	Gchil571.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 289686..290957 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:289686..290957+
coding sequence from alignment at tig00004380_pilon:289686..290957+

mRNA sequence

>Gchil571.t1 ID=Gchil571.t1|Name=Gchil571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=424bp
MTNQSPPASSSSSSTSSSSSSSSSSSSSSSSSWASSGQTANEACARAPHG
AYSCHGRAPYQHDRVLAHNAPHRALYAVADGHGAPDSGHLVSQHIVDTLP
TLVWRHTSRVRDAHAMRGALRAAVLQLDESAIAMTGAARVYAGSTLCALL
RVYNRLYCVNVGDSRAVLLSAPGVVTPLSEDHRCDLAGERYRIQRAGGVV
MGGLLNGYISMSRAIGDDDLKTHRNITRFPALRAGDSAGETRRFGKELFT
AEPDVTSVAVGVEQLVCVVASDGVWTALSNASVMNVVRKLVARRASPERI
ARRIVSRALAKHSRDNTSALVLFLWPYQHVYDALTRCVRRRRAPLVLRPL
PRDHALHQRYHHHLRCAAAAADADDSAAAVDDSTAAAAADDSALALRNSR
RALTALRGRLAPAWLARSLTTVT*

spliced messenger RNA

>Gchil571.t1 ID=Gchil571.t1|Name=Gchil571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00004380_pilon:289686..290957+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACCAGTCGCCGCCGGCGTCATCTtcgtcgtcgtcgacgtcgtc
gtcatcttcttcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtGGG
CATCATCAGGGCAAACAGCAAACGAAGCGTGCGCACGCGCGCCGCACGGC
GCCTACTCGTGCCACGGACGCGCGCCCTACCAGCACGACCGCGTGCTGGC
GCACAATGCGCCCCACCGCGCGCTCTACGCCGTGGCCGACGGACACGGCG
CGCCGGACAGCGGACACTTGGTATCTCAACACATCGTCGACACACTTCCA
ACACTAGTGTGGCGACACACATCGCGCGTACGCGACGCACACGCCATGCG
CGGCGCGCTGCGTGCAGCCGTGCTTCAACTGGACGAAAGCGCAATCGCCA
TGACGGGGGCGGCGCGCGTGTACGCTGGTAGCACGTTGTGCGCGCTGTTA
CGCGTTTATAACCGCTTGTATTGCGTGAATGTGGGCGACTCTCGGGCAGT
GTTACTGTCGGCTCCGGGCGTGGTGACACCGCTGTCGGAGGACCATCGGT
GCGATCTGGCGGGCGAGCGATATCGCATCCAGCGCGCTGGCGGCGTCGTC
ATGGGTGGTTTACTCAACGGATACATCTCCATGTCGCGCGCCATCGGCGA
CGACGATCTCAAGACCCACCGCAACATCACGCGCTTCCCGGCGCTGCGCG
CAGGCGACAGCGCGGGTGAGACGCGACGCTTCGGCAAGGAGCTGTTCACG
GCGGAGCCGGACGTGACGAGCGTGGCGGTAGGCGTGGAGCAGCTGGTGTG
TGTGGTGGCGTCGGACGGCGTATGGACAGCGCTGTCCAACGCGTCGGTGA
TGAACGTGGTGAGAAAACTGGTGGCGCGACGCGCGTCACCCGAACGCATT
GCACGTCGCATTGTGTCTCGCGCTCTCGCCAAACACTCGCGCGATAATAC
CTCCGCGCTGGTTCTGTTTCTGTGGCCGTACCAACATGTGTACGACGCGC
TTACGCGTTGCGTGCGTCGTCGTCGCGCCCCTCTCGTACTGCGTCCGCTG
CCGCGCGACCACGCGCTACACCAGCGCTACCACCACCATCTTCGttgcgc
cgccgccgccgccgatgctgacgattccgccgccgctgttgacgattcca
ccgccgccgccgctgctgacgATTCCGCCCTCGCGCTGCGCAACTCGAGG
CGAGCGCTCACCGCCCTCCGCGGCCGGCTAGCGCCTGCGTGGCTCGCGCG
CTCCCTCACCACCGTCACCTGA

protein sequence of Gchil571.t1

>Gchil571.t1 ID=Gchil571.t1|Name=Gchil571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=424bp
MTNQSPPASSSSSSTSSSSSSSSSSSSSSSSSWASSGQTANEACARAPHG
AYSCHGRAPYQHDRVLAHNAPHRALYAVADGHGAPDSGHLVSQHIVDTLP
TLVWRHTSRVRDAHAMRGALRAAVLQLDESAIAMTGAARVYAGSTLCALL
RVYNRLYCVNVGDSRAVLLSAPGVVTPLSEDHRCDLAGERYRIQRAGGVV
MGGLLNGYISMSRAIGDDDLKTHRNITRFPALRAGDSAGETRRFGKELFT
AEPDVTSVAVGVEQLVCVVASDGVWTALSNASVMNVVRKLVARRASPERI
ARRIVSRALAKHSRDNTSALVLFLWPYQHVYDALTRCVRRRRAPLVLRPL
PRDHALHQRYHHHLRCAAAAADADDSAAAVDDSTAAAAADDSALALRNSR
RALTALRGRLAPAWLARSLTTVT*

mRNA from alignment at tig00004380_pilon:289686..290957+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil571.t1 ID=Gchil571.t1|Name=Gchil571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00004380_pilon:289686..290957+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGAACCAGTCGCCGCCGGCGTCATCTtcgtcgtcgtcgacgtcgtc
gtcatcttcttcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtGGG
CATCATCAGGGCAAACAGCAAACGAAGCGTGCGCACGCGCGCCGCACGGC
GCCTACTCGTGCCACGGACGCGCGCCCTACCAGCACGACCGCGTGCTGGC
GCACAATGCGCCCCACCGCGCGCTCTACGCCGTGGCCGACGGACACGGCG
CGCCGGACAGCGGACACTTGGTATCTCAACACATCGTCGACACACTTCCA
ACACTAGTGTGGCGACACACATCGCGCGTACGCGACGCACACGCCATGCG
CGGCGCGCTGCGTGCAGCCGTGCTTCAACTGGACGAAAGCGCAATCGCCA
TGACGGGGGCGGCGCGCGTGTACGCTGGTAGCACGTTGTGCGCGCTGTTA
CGCGTTTATAACCGCTTGTATTGCGTGAATGTGGGCGACTCTCGGGCAGT
GTTACTGTCGGCTCCGGGCGTGGTGACACCGCTGTCGGAGGACCATCGGT
GCGATCTGGCGGGCGAGCGATATCGCATCCAGCGCGCTGGCGGCGTCGTC
ATGGGTGGTTTACTCAACGGATACATCTCCATGTCGCGCGCCATCGGCGA
CGACGATCTCAAGACCCACCGCAACATCACGCGCTTCCCGGCGCTGCGCG
CAGGCGACAGCGCGGGTGAGACGCGACGCTTCGGCAAGGAGCTGTTCACG
GCGGAGCCGGACGTGACGAGCGTGGCGGTAGGCGTGGAGCAGCTGGTGTG
TGTGGTGGCGTCGGACGGCGTATGGACAGCGCTGTCCAACGCGTCGGTGA
TGAACGTGGTGAGAAAACTGGTGGCGCGACGCGCGTCACCCGAACGCATT
GCACGTCGCATTGTGTCTCGCGCTCTCGCCAAACACTCGCGCGATAATAC
CTCCGCGCTGGTTCTGTTTCTGTGGCCGTACCAACATGTGTACGACGCGC
TTACGCGTTGCGTGCGTCGTCGTCGCGCCCCTCTCGTACTGCGTCCGCTG
CCGCGCGACCACGCGCTACACCAGCGCTACCACCACCATCTTCGttgcgc
cgccgccgccgccgatgctgacgattccgccgccgctgttgacgattcca
ccgccgccgccgctgctgacgATTCCGCCCTCGCGCTGCGCAACTCGAGG
CGAGCGCTCACCGCCCTCCGCGGCCGGCTAGCGCCTGCGTGGCTCGCGCG
CTCCCTCACCACCGTCACCTGA

Coding sequence (CDS) from alignment at tig00004380_pilon:289686..290957+

>Gchil571.t1 ID=Gchil571.t1|Name=Gchil571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00004380_pilon:289686..290957+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGAACCAGTCGCCGCCGGCGTCATCTtcgtcgtcgtcgacgtcgtc
gtcatcttcttcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtGGG
CATCATCAGGGCAAACAGCAAACGAAGCGTGCGCACGCGCGCCGCACGGC
GCCTACTCGTGCCACGGACGCGCGCCCTACCAGCACGACCGCGTGCTGGC
GCACAATGCGCCCCACCGCGCGCTCTACGCCGTGGCCGACGGACACGGCG
CGCCGGACAGCGGACACTTGGTATCTCAACACATCGTCGACACACTTCCA
ACACTAGTGTGGCGACACACATCGCGCGTACGCGACGCACACGCCATGCG
CGGCGCGCTGCGTGCAGCCGTGCTTCAACTGGACGAAAGCGCAATCGCCA
TGACGGGGGCGGCGCGCGTGTACGCTGGTAGCACGTTGTGCGCGCTGTTA
CGCGTTTATAACCGCTTGTATTGCGTGAATGTGGGCGACTCTCGGGCAGT
GTTACTGTCGGCTCCGGGCGTGGTGACACCGCTGTCGGAGGACCATCGGT
GCGATCTGGCGGGCGAGCGATATCGCATCCAGCGCGCTGGCGGCGTCGTC
ATGGGTGGTTTACTCAACGGATACATCTCCATGTCGCGCGCCATCGGCGA
CGACGATCTCAAGACCCACCGCAACATCACGCGCTTCCCGGCGCTGCGCG
CAGGCGACAGCGCGGGTGAGACGCGACGCTTCGGCAAGGAGCTGTTCACG
GCGGAGCCGGACGTGACGAGCGTGGCGGTAGGCGTGGAGCAGCTGGTGTG
TGTGGTGGCGTCGGACGGCGTATGGACAGCGCTGTCCAACGCGTCGGTGA
TGAACGTGGTGAGAAAACTGGTGGCGCGACGCGCGTCACCCGAACGCATT
GCACGTCGCATTGTGTCTCGCGCTCTCGCCAAACACTCGCGCGATAATAC
CTCCGCGCTGGTTCTGTTTCTGTGGCCGTACCAACATGTGTACGACGCGC
TTACGCGTTGCGTGCGTCGTCGTCGCGCCCCTCTCGTACTGCGTCCGCTG
CCGCGCGACCACGCGCTACACCAGCGCTACCACCACCATCTTCGttgcgc
cgccgccgccgccgatgctgacgattccgccgccgctgttgacgattcca
ccgccgccgccgctgctgacgATTCCGCCCTCGCGCTGCGCAACTCGAGG
CGAGCGCTCACCGCCCTCCGCGGCCGGCTAGCGCCTGCGTGGCTCGCGCG
CTCCCTCACCACCGTCACCTGA