Gchil5708.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5708.t1
Unique NameGchil5708.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length321
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:997959..998921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010039330.1
PFAMsHAD_2,Hydrolase_6,Hydrolase_like
Max annot lvl35493|Streptophyta
Evalue6.41e-51
EggNOG OGsCOG0647@1|root,2QU6A@2759|Eukaryota,37RY9@33090|Viridiplantae,3GC0U@35493|Streptophyta
DescriptionHaloacid dehalogenase-like hydrolase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5708Gchil5708Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 997959..998921 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5708.t1.stop1Gchil5708.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 997959..997961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5708.t1.CDS1Gchil5708.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 997959..998921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5708.t1.exon1Gchil5708.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 997959..998921 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5708.t1.start1Gchil5708.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 998919..998921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5708.t1Gchil5708.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 997959..998921 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5708.t1 ID=Gchil5708.t1|Name=Gchil5708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp
MRQINGVSEIARNYDIVLLDQFGVIHDGRTPYPNALNAIKKLHESGLKIA
ILSNSSKQAKVARQKVSKMGVDPDSIHEIVTSGELTLGYVKNLMKSRSKA
NVLHFNWASNRGTIELSDHNVTQVVSVSVSDKDRLLVSPESIDFILAHGT
DGVTLADGTVQSFALDSLRDLCRTIARQAPRTPFICGNPDFVTVDGGTLR
TMPGTLARDYEMEGGTVVRLGKPGNQAYEVAIEACGKGRVLAIGDSIAHD
ILGAAKRNIDSLYVAGGIHAPLFHINPDDGFTGKASPFRYDEKLVDKIVQ
DEAPELGMRRPTYICDFLRW*
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spliced messenger RNA

>Gchil5708.t1 ID=Gchil5708.t1|Name=Gchil5708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00000015_pilon:997959..998921- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAAATCAATGGTGTCTCTGAGATAGCAAGGAATTACGATATCGT
TCTGCTCGATCAGTTTGGAGTTATCCATGATGGTAGAACTCCGTATCCAA
ACGCATTGAATGCCATCAAGAAACTCCACGAGAGTGGTTTAAAAATAGCA
ATTCTCTCCAACTCCTCCAAGCAGGCGAAGGTAGCGCGGCAAAAGGTTTC
AAAGATGGGTGTGGATCCCGACTCAATCCATGAAATTGTTACGTCGGGAG
AGCTGACTCTGGGTTATGTGAAGAATTTGATGAAATCTCGATCAAAGGCA
AATGTTTTGCACTTTAACTGGGCTTCGAATAGGGGTACAATAGAACTCTC
TGATCACAATGTTACACAAGTAGTTTCTGTTTCAGTTTCAGACAAAGATC
GTTTGCTCGTATCACCGGAAAGCATTGACTTTATCCTCGCGCACGGAACT
GATGGAGTAACTCTGGCCGACGGAACAGTGCAATCGTTTGCTCTGGATTC
TCTTCGCGACCTATGTCGGACTATCGCTCGTCAGGCACCAAGAACACCAT
TTATTTGCGGCAATCCGGACTTTGTCACGGTCGATGGCGGAACTCTGAGA
ACGATGCCTGGTACTCTTGCTCGTGACTACGAAATGGAAGGCGGTACTGT
TGTAAGACTTGGAAAACCTGGGAATCAAGCATATGAAGTGGCAATCGAAG
CATGTGGCAAAGGTCGCGTATTGGCCATTGGCGATTCAATCGCGCACGAC
ATCCTTGGTGCAGCAAAAAGAAACATTGACTCCCTTTATGTTGCTGGTGG
AATACATGCCCCTCTATTCCACATTAATCCTGACGATGGATTTACGGGGA
AGGCTTCTCCGTTTCGATATGATGAGAAATTAGTTGACAAAATAGTACAG
GACGAAGCGCCTGAACTTGGCATGAGACGGCCAACCTACATTTGTGATTT
CCTTCGTTGGTAA
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protein sequence of Gchil5708.t1

>Gchil5708.t1 ID=Gchil5708.t1|Name=Gchil5708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=321bp
MRQINGVSEIARNYDIVLLDQFGVIHDGRTPYPNALNAIKKLHESGLKIA
ILSNSSKQAKVARQKVSKMGVDPDSIHEIVTSGELTLGYVKNLMKSRSKA
NVLHFNWASNRGTIELSDHNVTQVVSVSVSDKDRLLVSPESIDFILAHGT
DGVTLADGTVQSFALDSLRDLCRTIARQAPRTPFICGNPDFVTVDGGTLR
TMPGTLARDYEMEGGTVVRLGKPGNQAYEVAIEACGKGRVLAIGDSIAHD
ILGAAKRNIDSLYVAGGIHAPLFHINPDDGFTGKASPFRYDEKLVDKIVQ
DEAPELGMRRPTYICDFLRW*
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mRNA from alignment at tig00000015_pilon:997959..998921-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5708.t1 ID=Gchil5708.t1|Name=Gchil5708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=963bp|location=Sequence derived from alignment at tig00000015_pilon:997959..998921- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCAAATCAATGGTGTCTCTGAGATAGCAAGGAATTACGATATCGT
TCTGCTCGATCAGTTTGGAGTTATCCATGATGGTAGAACTCCGTATCCAA
ACGCATTGAATGCCATCAAGAAACTCCACGAGAGTGGTTTAAAAATAGCA
ATTCTCTCCAACTCCTCCAAGCAGGCGAAGGTAGCGCGGCAAAAGGTTTC
AAAGATGGGTGTGGATCCCGACTCAATCCATGAAATTGTTACGTCGGGAG
AGCTGACTCTGGGTTATGTGAAGAATTTGATGAAATCTCGATCAAAGGCA
AATGTTTTGCACTTTAACTGGGCTTCGAATAGGGGTACAATAGAACTCTC
TGATCACAATGTTACACAAGTAGTTTCTGTTTCAGTTTCAGACAAAGATC
GTTTGCTCGTATCACCGGAAAGCATTGACTTTATCCTCGCGCACGGAACT
GATGGAGTAACTCTGGCCGACGGAACAGTGCAATCGTTTGCTCTGGATTC
TCTTCGCGACCTATGTCGGACTATCGCTCGTCAGGCACCAAGAACACCAT
TTATTTGCGGCAATCCGGACTTTGTCACGGTCGATGGCGGAACTCTGAGA
ACGATGCCTGGTACTCTTGCTCGTGACTACGAAATGGAAGGCGGTACTGT
TGTAAGACTTGGAAAACCTGGGAATCAAGCATATGAAGTGGCAATCGAAG
CATGTGGCAAAGGTCGCGTATTGGCCATTGGCGATTCAATCGCGCACGAC
ATCCTTGGTGCAGCAAAAAGAAACATTGACTCCCTTTATGTTGCTGGTGG
AATACATGCCCCTCTATTCCACATTAATCCTGACGATGGATTTACGGGGA
AGGCTTCTCCGTTTCGATATGATGAGAAATTAGTTGACAAAATAGTACAG
GACGAAGCGCCTGAACTTGGCATGAGACGGCCAACCTACATTTGTGATTT
CCTTCGTTGGTAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:997959..998921-

>Gchil5708.t1 ID=Gchil5708.t1|Name=Gchil5708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=963bp|location=Sequence derived from alignment at tig00000015_pilon:997959..998921- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCCAAATCAATGGTGTCTCTGAGATAGCAAGGAATTACGATATCGT
TCTGCTCGATCAGTTTGGAGTTATCCATGATGGTAGAACTCCGTATCCAA
ACGCATTGAATGCCATCAAGAAACTCCACGAGAGTGGTTTAAAAATAGCA
ATTCTCTCCAACTCCTCCAAGCAGGCGAAGGTAGCGCGGCAAAAGGTTTC
AAAGATGGGTGTGGATCCCGACTCAATCCATGAAATTGTTACGTCGGGAG
AGCTGACTCTGGGTTATGTGAAGAATTTGATGAAATCTCGATCAAAGGCA
AATGTTTTGCACTTTAACTGGGCTTCGAATAGGGGTACAATAGAACTCTC
TGATCACAATGTTACACAAGTAGTTTCTGTTTCAGTTTCAGACAAAGATC
GTTTGCTCGTATCACCGGAAAGCATTGACTTTATCCTCGCGCACGGAACT
GATGGAGTAACTCTGGCCGACGGAACAGTGCAATCGTTTGCTCTGGATTC
TCTTCGCGACCTATGTCGGACTATCGCTCGTCAGGCACCAAGAACACCAT
TTATTTGCGGCAATCCGGACTTTGTCACGGTCGATGGCGGAACTCTGAGA
ACGATGCCTGGTACTCTTGCTCGTGACTACGAAATGGAAGGCGGTACTGT
TGTAAGACTTGGAAAACCTGGGAATCAAGCATATGAAGTGGCAATCGAAG
CATGTGGCAAAGGTCGCGTATTGGCCATTGGCGATTCAATCGCGCACGAC
ATCCTTGGTGCAGCAAAAAGAAACATTGACTCCCTTTATGTTGCTGGTGG
AATACATGCCCCTCTATTCCACATTAATCCTGACGATGGATTTACGGGGA
AGGCTTCTCCGTTTCGATATGATGAGAAATTAGTTGACAAAATAGTACAG
GACGAAGCGCCTGAACTTGGCATGAGACGGCCAACCTACATTTGTGATTT
CCTTCGTTGGTAA
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