Gchil568.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil568.t1
Unique NameGchil568.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length697
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:282720..284810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707610.1
Preferred nameACSS2
PFAMsACAS_N,AMP-binding,AMP-binding_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00012,RC00043,RC00070,RC02746,RC02816
KEGG koko:K01895
KEGG ReactionR00235,R00236,R00316,R00926,R01354
KEGG Pathwayko00010,ko00620,ko00640,ko00680,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00620,map00640,map00680,map00720,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00357
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003987,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006066,GO:0006067,GO:0006069,GO:0006082,GO:0006083,GO:0006084,GO:0006085,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009507,GO:0009514,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0010033,GO:0015645,GO:0016053,GO:0016208,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017000,GO:0017076,GO:0017144,GO:0018130,GO:0019413,GO:0019438,GO:0019541,GO:0019542,GO:0019637,GO:0019693,GO:0019752,GO:0030534,GO:0030554,GO:0031974,GO:0031981,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034308,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046390,GO:0046394,GO:0046459,GO:0046483,GO:0046677,GO:0048149,GO:0050896,GO:0051186,GO:0051188,GO:0051790,GO:0055086,GO:0055114,GO:0070013,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097305,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901700
Evalue1.35e-255
EggNOG OGsCOG0365@1|root,KOG1175@2759|Eukaryota
EC6.2.1.1
Descriptionsynthetase
COG categoryI
BiGG ReactioniRC1080.CRv4_Au5_s7_g14502_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil568Gchil568Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 282720..284810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil568.t1.stop1Gchil568.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 282720..282722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil568.t1.CDS1Gchil568.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 282720..284810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil568.t1.exon1Gchil568.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 282720..284810 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil568.t1.start1Gchil568.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 284808..284810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil568.t1Gchil568.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 282720..284810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil568.t1 ID=Gchil568.t1|Name=Gchil568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=697bp
MHSVKHAKTRAESTHPIAAVALPTPHIPDIHTYRTLYNRSISDPSAFWND
IAHSFVWKQPTDHQQHQHHHQDSVLSYNFNPSALNGVNVSFLSDRLTNVC
YNALDRWLEHPAKANSVAFYCEGNEPGRRTTVTFSQLSDMVQRFSNVLKI
QLNVKKGDVVILYMPMIPQLPAAMLACARIGAVHSVVFGGFSAEALAGRI
IDSEASVLVVTESVGRGAKSIKLKSISDQAIRIAAKAGHTVEYQVVTKTP
GTDKIHASLLELPRDLDWDTVLAQADPVCPIEWVESEHPLFVLYTSGSTG
KPKGVVHTSAGYMIYAATTFKYTFDYQPDDVFFSTSDCGWITGHSYVTYG
PLLNGATQVLYEGIPNYPTPARLWQIVEHYKVAQLYTAPTVIRALKGANP
PPVTESNPNPSSSDWVTLCNRSSLRVLGTVGEPINPEAWLWYHDVVGDKK
CAIVDTWWQTETGGHCITPLPIPGLPLKPGCAMMPFFGIEPALVDAEGQE
LEGPAEGFLVIKKAWPSTLRTVYRDHKRMEDTYFSRFPGYYMTGDGARRD
ADGHYWLTGRVDDILNVSGHRIGTAEVESALVLHDAVAEAAVVGVPHDVK
GEALYAYVSLMSGVETTEELRKSIRMCVRTEIGPFAAPDTIQWAPALPKT
RSGKIMRRLLRKIAVHGLDTDKEDLGDTSTLTDPSVIDLLLSTYGK*
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spliced messenger RNA

>Gchil568.t1 ID=Gchil568.t1|Name=Gchil568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at tig00004380_pilon:282720..284810- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCCGTCAAGCATGCCAAGACTCGCGCTGAGAGCACCCATCCAAT
TGCCGCCGTTGCCTTGCCCACGCCGCATATTCCCGACATTCACACGTACC
GCACCTTGTACAACCGCTCCATCTCCGATCCTTCCGCATTTTGGAACGAC
ATTGCACACTCTTTTGTCTGGAAACAACCCACGGATCATCAGCAGCACCA
GCACCACCATCAAGACTCCGTGCTCTCGTACAATTTCAACCCCTCCGCCT
TGAATGGTGTCAACGTCTCATTTCTCAGCGATCGACTTACAAATGTCTGT
TACAACGCGCTCGATAGATGGCTTGAACATCCCGCAAAGGCTAATTCCGT
TGCATTCTACTGCGAGGGAAATGAGCCCGGTCGACGCACAACAGTCACCT
TTAGCCAGTTATCAGACATGGTCCAACGCTTCTCAAACGTCTTGAAGATC
CAATTGAACGTCAAGAAAGGAGATGTCGTCATATTGTACATGCCAATGAT
CCCGCAGCTCCCGGCTGCCATGCTTGCGTGCGCCCGTATTGGCGCCGTAC
ATTCCGTCGTCTTTGGCGGCTTCAGCGCGGAGGCCTTGGCAGGTCGCATA
ATCGATAGTGAAGCATCTGTGCTTGTTGTCACCGAAAGCGTTGGAAGGGG
AGCCAAGTCCATCAAACTCAAGAGCATCTCGGATCAAGCCATCCGCATTG
CTGCCAAAGCTGGCCATACTGTCGAGTACCAGGTCGTCACCAAGACGCCC
GGCACCGATAAAATTCATGCTTCGTTGCTGGAACTTCCTCGTGATCTCGA
TTGGGACACCGTGCTCGCTCAAGCAGATCCTGTTTGTCCAATCGAATGGG
TTGAGAGCGAGCATCCCCTGTTTGTGCTCTACACAAGTGGTAGCACTGGG
AAACCAAAAGGCGTCGTTCACACCAGCGCCGGTTATATGATATACGCCGC
TACTACTTTTAAATATACCTTTGATTATCAACCTGATGATGTTTTCTTTT
CAACATCAGATTGTGGCTGGATTACAGGACATTCATATGTTACCTATGGC
CCCCTTCTAAACGGCGCCACACAGGTTCTCTACGAGGGCATACCCAACTA
TCCCACGCCTGCTCGCCTTTGGCAAATTGTTGAGCACTACAAGGTTGCGC
AACTGTACACTGCTCCCACCGTCATTCGCGCCTTGAAAGGAGCAAATCCC
CCGCCTGTCACCGAGAGCAACCCGAATCCATCTAGTTCGGATTGGGTCAC
TCTCTGCAACCGGTCTAGTTTACGCGTACTTGGCACGGTGGGAGAGCCAA
TTAATCCGGAAGCATGGTTGTGGTATCATGATGTAGTTGGGGACAAGAAA
TGCGCTATTGTTGATACCTGGTGGCAAACGGAAACTGGCGGTCACTGCAT
TACGCCGTTGCCTATTCCGGGCTTGCCCTTGAAACCTGGGTGTGCCATGA
TGCCGTTCTTCGGAATTGAGCCGGCTCTTGTTGATGCGGAAGGGCAGGAA
TTGGAGGGGCCTGCGGAGGGCTTCTTGGTCATCAAGAAAGCATGGCCGTC
GACGCTTCGCACCGTGTATCGGGACCATAAGCGAATGGAAGACACATACT
TTTCTCGATTTCCGGGCTACTACATGACTGGTGATGGTGCCCGTCGCGAT
GCTGACGGACATTACTGGCTTACTGGTCGTGTGGATGATATTTTGAATGT
TAGTGGGCATCGAATTGGAACAGCTGAAGTTGAATCTGCTTTGGTGCTTC
ATGATGCGGTGGCGGAGGCCGCCGTCGTGGGCGTTCCGCACGATGTGAAG
GGAGAAGCGTTGTATGCTTACGTGTCACTCATGAGTGGGGTTGAAACCAC
TGAGGAGCTTCGAAAGTCAATTCGCATGTGTGTGAGAACTGAAATAGGAC
CATTTGCTGCACCAGATACTATTCAATGGGCTCCGGCTCTTCCGAAGACT
CGATCTGGAAAGATTATGCGTCGACTCTTGAGAAAGATTGCTGTGCATGG
TCTTGATACTGACAAGGAAGACCTTGGCGATACGAGCACCCTGACAGATC
CAAGCGTTATTGATTTGTTGTTGTCAACATATGGAAAGTGA
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protein sequence of Gchil568.t1

>Gchil568.t1 ID=Gchil568.t1|Name=Gchil568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=697bp
MHSVKHAKTRAESTHPIAAVALPTPHIPDIHTYRTLYNRSISDPSAFWND
IAHSFVWKQPTDHQQHQHHHQDSVLSYNFNPSALNGVNVSFLSDRLTNVC
YNALDRWLEHPAKANSVAFYCEGNEPGRRTTVTFSQLSDMVQRFSNVLKI
QLNVKKGDVVILYMPMIPQLPAAMLACARIGAVHSVVFGGFSAEALAGRI
IDSEASVLVVTESVGRGAKSIKLKSISDQAIRIAAKAGHTVEYQVVTKTP
GTDKIHASLLELPRDLDWDTVLAQADPVCPIEWVESEHPLFVLYTSGSTG
KPKGVVHTSAGYMIYAATTFKYTFDYQPDDVFFSTSDCGWITGHSYVTYG
PLLNGATQVLYEGIPNYPTPARLWQIVEHYKVAQLYTAPTVIRALKGANP
PPVTESNPNPSSSDWVTLCNRSSLRVLGTVGEPINPEAWLWYHDVVGDKK
CAIVDTWWQTETGGHCITPLPIPGLPLKPGCAMMPFFGIEPALVDAEGQE
LEGPAEGFLVIKKAWPSTLRTVYRDHKRMEDTYFSRFPGYYMTGDGARRD
ADGHYWLTGRVDDILNVSGHRIGTAEVESALVLHDAVAEAAVVGVPHDVK
GEALYAYVSLMSGVETTEELRKSIRMCVRTEIGPFAAPDTIQWAPALPKT
RSGKIMRRLLRKIAVHGLDTDKEDLGDTSTLTDPSVIDLLLSTYGK*
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mRNA from alignment at tig00004380_pilon:282720..284810-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil568.t1 ID=Gchil568.t1|Name=Gchil568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2091bp|location=Sequence derived from alignment at tig00004380_pilon:282720..284810- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCCGTCAAGCATGCCAAGACTCGCGCTGAGAGCACCCATCCAAT TGCCGCCGTTGCCTTGCCCACGCCGCATATTCCCGACATTCACACGTACC GCACCTTGTACAACCGCTCCATCTCCGATCCTTCCGCATTTTGGAACGAC ATTGCACACTCTTTTGTCTGGAAACAACCCACGGATCATCAGCAGCACCA GCACCACCATCAAGACTCCGTGCTCTCGTACAATTTCAACCCCTCCGCCT TGAATGGTGTCAACGTCTCATTTCTCAGCGATCGACTTACAAATGTCTGT TACAACGCGCTCGATAGATGGCTTGAACATCCCGCAAAGGCTAATTCCGT TGCATTCTACTGCGAGGGAAATGAGCCCGGTCGACGCACAACAGTCACCT TTAGCCAGTTATCAGACATGGTCCAACGCTTCTCAAACGTCTTGAAGATC CAATTGAACGTCAAGAAAGGAGATGTCGTCATATTGTACATGCCAATGAT CCCGCAGCTCCCGGCTGCCATGCTTGCGTGCGCCCGTATTGGCGCCGTAC ATTCCGTCGTCTTTGGCGGCTTCAGCGCGGAGGCCTTGGCAGGTCGCATA ATCGATAGTGAAGCATCTGTGCTTGTTGTCACCGAAAGCGTTGGAAGGGG AGCCAAGTCCATCAAACTCAAGAGCATCTCGGATCAAGCCATCCGCATTG CTGCCAAAGCTGGCCATACTGTCGAGTACCAGGTCGTCACCAAGACGCCC GGCACCGATAAAATTCATGCTTCGTTGCTGGAACTTCCTCGTGATCTCGA TTGGGACACCGTGCTCGCTCAAGCAGATCCTGTTTGTCCAATCGAATGGG TTGAGAGCGAGCATCCCCTGTTTGTGCTCTACACAAGTGGTAGCACTGGG AAACCAAAAGGCGTCGTTCACACCAGCGCCGGTTATATGATATACGCCGC TACTACTTTTAAATATACCTTTGATTATCAACCTGATGATGTTTTCTTTT CAACATCAGATTGTGGCTGGATTACAGGACATTCATATGTTACCTATGGC CCCCTTCTAAACGGCGCCACACAGGTTCTCTACGAGGGCATACCCAACTA TCCCACGCCTGCTCGCCTTTGGCAAATTGTTGAGCACTACAAGGTTGCGC AACTGTACACTGCTCCCACCGTCATTCGCGCCTTGAAAGGAGCAAATCCC CCGCCTGTCACCGAGAGCAACCCGAATCCATCTAGTTCGGATTGGGTCAC TCTCTGCAACCGGTCTAGTTTACGCGTACTTGGCACGGTGGGAGAGCCAA TTAATCCGGAAGCATGGTTGTGGTATCATGATGTAGTTGGGGACAAGAAA TGCGCTATTGTTGATACCTGGTGGCAAACGGAAACTGGCGGTCACTGCAT TACGCCGTTGCCTATTCCGGGCTTGCCCTTGAAACCTGGGTGTGCCATGA TGCCGTTCTTCGGAATTGAGCCGGCTCTTGTTGATGCGGAAGGGCAGGAA TTGGAGGGGCCTGCGGAGGGCTTCTTGGTCATCAAGAAAGCATGGCCGTC GACGCTTCGCACCGTGTATCGGGACCATAAGCGAATGGAAGACACATACT TTTCTCGATTTCCGGGCTACTACATGACTGGTGATGGTGCCCGTCGCGAT GCTGACGGACATTACTGGCTTACTGGTCGTGTGGATGATATTTTGAATGT TAGTGGGCATCGAATTGGAACAGCTGAAGTTGAATCTGCTTTGGTGCTTC ATGATGCGGTGGCGGAGGCCGCCGTCGTGGGCGTTCCGCACGATGTGAAG GGAGAAGCGTTGTATGCTTACGTGTCACTCATGAGTGGGGTTGAAACCAC TGAGGAGCTTCGAAAGTCAATTCGCATGTGTGTGAGAACTGAAATAGGAC CATTTGCTGCACCAGATACTATTCAATGGGCTCCGGCTCTTCCGAAGACT CGATCTGGAAAGATTATGCGTCGACTCTTGAGAAAGATTGCTGTGCATGG TCTTGATACTGACAAGGAAGACCTTGGCGATACGAGCACCCTGACAGATC CAAGCGTTATTGATTTGTTGTTGTCAACATATGGAAAGTGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:282720..284810-

>Gchil568.t1 ID=Gchil568.t1|Name=Gchil568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2091bp|location=Sequence derived from alignment at tig00004380_pilon:282720..284810- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCCGTCAAGCATGCCAAGACTCGCGCTGAGAGCACCCATCCAAT
TGCCGCCGTTGCCTTGCCCACGCCGCATATTCCCGACATTCACACGTACC
GCACCTTGTACAACCGCTCCATCTCCGATCCTTCCGCATTTTGGAACGAC
ATTGCACACTCTTTTGTCTGGAAACAACCCACGGATCATCAGCAGCACCA
GCACCACCATCAAGACTCCGTGCTCTCGTACAATTTCAACCCCTCCGCCT
TGAATGGTGTCAACGTCTCATTTCTCAGCGATCGACTTACAAATGTCTGT
TACAACGCGCTCGATAGATGGCTTGAACATCCCGCAAAGGCTAATTCCGT
TGCATTCTACTGCGAGGGAAATGAGCCCGGTCGACGCACAACAGTCACCT
TTAGCCAGTTATCAGACATGGTCCAACGCTTCTCAAACGTCTTGAAGATC
CAATTGAACGTCAAGAAAGGAGATGTCGTCATATTGTACATGCCAATGAT
CCCGCAGCTCCCGGCTGCCATGCTTGCGTGCGCCCGTATTGGCGCCGTAC
ATTCCGTCGTCTTTGGCGGCTTCAGCGCGGAGGCCTTGGCAGGTCGCATA
ATCGATAGTGAAGCATCTGTGCTTGTTGTCACCGAAAGCGTTGGAAGGGG
AGCCAAGTCCATCAAACTCAAGAGCATCTCGGATCAAGCCATCCGCATTG
CTGCCAAAGCTGGCCATACTGTCGAGTACCAGGTCGTCACCAAGACGCCC
GGCACCGATAAAATTCATGCTTCGTTGCTGGAACTTCCTCGTGATCTCGA
TTGGGACACCGTGCTCGCTCAAGCAGATCCTGTTTGTCCAATCGAATGGG
TTGAGAGCGAGCATCCCCTGTTTGTGCTCTACACAAGTGGTAGCACTGGG
AAACCAAAAGGCGTCGTTCACACCAGCGCCGGTTATATGATATACGCCGC
TACTACTTTTAAATATACCTTTGATTATCAACCTGATGATGTTTTCTTTT
CAACATCAGATTGTGGCTGGATTACAGGACATTCATATGTTACCTATGGC
CCCCTTCTAAACGGCGCCACACAGGTTCTCTACGAGGGCATACCCAACTA
TCCCACGCCTGCTCGCCTTTGGCAAATTGTTGAGCACTACAAGGTTGCGC
AACTGTACACTGCTCCCACCGTCATTCGCGCCTTGAAAGGAGCAAATCCC
CCGCCTGTCACCGAGAGCAACCCGAATCCATCTAGTTCGGATTGGGTCAC
TCTCTGCAACCGGTCTAGTTTACGCGTACTTGGCACGGTGGGAGAGCCAA
TTAATCCGGAAGCATGGTTGTGGTATCATGATGTAGTTGGGGACAAGAAA
TGCGCTATTGTTGATACCTGGTGGCAAACGGAAACTGGCGGTCACTGCAT
TACGCCGTTGCCTATTCCGGGCTTGCCCTTGAAACCTGGGTGTGCCATGA
TGCCGTTCTTCGGAATTGAGCCGGCTCTTGTTGATGCGGAAGGGCAGGAA
TTGGAGGGGCCTGCGGAGGGCTTCTTGGTCATCAAGAAAGCATGGCCGTC
GACGCTTCGCACCGTGTATCGGGACCATAAGCGAATGGAAGACACATACT
TTTCTCGATTTCCGGGCTACTACATGACTGGTGATGGTGCCCGTCGCGAT
GCTGACGGACATTACTGGCTTACTGGTCGTGTGGATGATATTTTGAATGT
TAGTGGGCATCGAATTGGAACAGCTGAAGTTGAATCTGCTTTGGTGCTTC
ATGATGCGGTGGCGGAGGCCGCCGTCGTGGGCGTTCCGCACGATGTGAAG
GGAGAAGCGTTGTATGCTTACGTGTCACTCATGAGTGGGGTTGAAACCAC
TGAGGAGCTTCGAAAGTCAATTCGCATGTGTGTGAGAACTGAAATAGGAC
CATTTGCTGCACCAGATACTATTCAATGGGCTCCGGCTCTTCCGAAGACT
CGATCTGGAAAGATTATGCGTCGACTCTTGAGAAAGATTGCTGTGCATGG
TCTTGATACTGACAAGGAAGACCTTGGCGATACGAGCACCCTGACAGATC
CAAGCGTTATTGATTTGTTGTTGTCAACATATGGAAAGTGA
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