Gchil5677.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5677.t1
Unique NameGchil5677.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:735899..736747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5677Gchil5677Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 735899..736747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5677.t1Gchil5677.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 735899..736747 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5677.t1.start1Gchil5677.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 735899..735901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5677.t1.CDS1Gchil5677.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 735899..736123 +
Gchil5677.t1.CDS2Gchil5677.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 736448..736747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5677.t1.exon1Gchil5677.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 735899..736123 +
Gchil5677.t1.exon2Gchil5677.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 736448..736747 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5677.t1.intron1Gchil5677.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 736124..736447 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5677.t1.stop1Gchil5677.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 736745..736747 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5677.t1 ID=Gchil5677.t1|Name=Gchil5677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MERGLGSKDLEGGRLYVRDAKVESYSNIIATRDSLAIEKEKVPNFSLDEF
VRLFIIIRDDDLARKAIKRAFGSPMLFGCGTDNEDTEMIHVFSKVMGDEV
SYDTEVHIEKGDEITRGVPFAKKRRRSSDSIVLEHKMKKLVDITTSSGMV
SQRQKTEFDGSIIQKQLEIVRAEI*
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spliced messenger RNA

>Gchil5677.t1 ID=Gchil5677.t1|Name=Gchil5677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000015_pilon:735899..736747+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCGGCTTAGGGTCAAAGGACCTGGAGGGCGGTCGCCTTTACGT
CCGCGATGCTAAAGTTGAGTCCTATTCAAATATTATAGCCACCCGAGATT
CGTTAGCAATTGAAAAGGAAAAAGTTCCGAACTTTTCATTGGACGAGTTT
GTGCGCCTTTTTATCATTATTCGTGACGACGATCTCGCCCGAAAGGCAAT
AAAACGTGCTTTTGGATCTCCTATGCTGTTTGGCTGTGGAACGGACAATG
AGGACACTGAGATGATACACGTGTTTTCCAAGGTAATGGGGGATGAAGTT
AGCTATGATACAGAAGTGCACATTGAAAAAGGGGATGAAATCACTCGGGG
TGTCCCGTTTGCAAAGAAAAGACGCCGTTCAAGTGACTCCATTGTTTTAG
AGCATAAGATGAAAAAGCTGGTGGACATCACTACGTCGTCGGGAATGGTT
TCTCAGAGGCAGAAGACCGAGTTCGATGGATCAATTATACAGAAGCAGCT
AGAAATAGTGAGGGCCGAGATATAA
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protein sequence of Gchil5677.t1

>Gchil5677.t1 ID=Gchil5677.t1|Name=Gchil5677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MERGLGSKDLEGGRLYVRDAKVESYSNIIATRDSLAIEKEKVPNFSLDEF
VRLFIIIRDDDLARKAIKRAFGSPMLFGCGTDNEDTEMIHVFSKVMGDEV
SYDTEVHIEKGDEITRGVPFAKKRRRSSDSIVLEHKMKKLVDITTSSGMV
SQRQKTEFDGSIIQKQLEIVRAEI*
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mRNA from alignment at tig00000015_pilon:735899..736747+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5677.t1 ID=Gchil5677.t1|Name=Gchil5677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000015_pilon:735899..736747+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGCGGCTTAGGGTCAAAGGACCTGGAGGGCGGTCGCCTTTACGT
CCGCGATGCTAAAGTTGAGTCCTATTCAAATATTATAGCCACCCGAGATT
CGTTAGCAATTGAAAAGGAAAAAGTTCCGAACTTTTCATTGGACGAGTTT
GTGCGCCTTTTTATCATTATTCGTGACGACGATCTCGCCCGAAAGGCAAT
AAAACGTGCTTTTGGATCTCCTATGGTGCGTCGCGAGCTCGACGATAGGG
TCTCTCAATATGACTTCTTTATTTCCGCTGAAAATCGTTGTATCGTCCAT
ACCCTACTGACCAGGGCAGAACTGACAAATGTTCTAGAGAACATCGCTTT
CTCCCGAAGCCCTCTTGCGCACAGATATTAGGCTTTAACTAAGCGAAATT
ACCAAGACGCAAAAAAGGATTTTACATTCTTCTACGAAAAATGGTCTGCA
TCGGGACAGAACGACCCCGAATGCTTCCCGAATCATCTTCTTAAACATCC
AAATGGGTCTTTCATGATTCCATTAGCTCGTTAGCTTATCTTTTTTAAGC
TGTTTGGCTGTGGAACGGACAATGAGGACACTGAGATGATACACGTGTTT
TCCAAGGTAATGGGGGATGAAGTTAGCTATGATACAGAAGTGCACATTGA
AAAAGGGGATGAAATCACTCGGGGTGTCCCGTTTGCAAAGAAAAGACGCC
GTTCAAGTGACTCCATTGTTTTAGAGCATAAGATGAAAAAGCTGGTGGAC
ATCACTACGTCGTCGGGAATGGTTTCTCAGAGGCAGAAGACCGAGTTCGA
TGGATCAATTATACAGAAGCAGCTAGAAATAGTGAGGGCCGAGATATAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:735899..736747+

>Gchil5677.t1 ID=Gchil5677.t1|Name=Gchil5677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000015_pilon:735899..736747+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGCGGCTTAGGGTCAAAGGACCTGGAGGGCGGTCGCCTTTACGT
CCGCGATGCTAAAGTTGAGTCCTATTCAAATATTATAGCCACCCGAGATT
CGTTAGCAATTGAAAAGGAAAAAGTTCCGAACTTTTCATTGGACGAGTTT
GTGCGCCTTTTTATCATTATTCGTGACGACGATCTCGCCCGAAAGGCAAT
AAAACGTGCTTTTGGATCTCCTATGCTGTTTGGCTGTGGAACGGACAATG
AGGACACTGAGATGATACACGTGTTTTCCAAGGTAATGGGGGATGAAGTT
AGCTATGATACAGAAGTGCACATTGAAAAAGGGGATGAAATCACTCGGGG
TGTCCCGTTTGCAAAGAAAAGACGCCGTTCAAGTGACTCCATTGTTTTAG
AGCATAAGATGAAAAAGCTGGTGGACATCACTACGTCGTCGGGAATGGTT
TCTCAGAGGCAGAAGACCGAGTTCGATGGATCAATTATACAGAAGCAGCT
AGAAATAGTGAGGGCCGAGATATAA
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