Gchil5672.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5672.t1
Unique NameGchil5672.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:645716..646192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1404245.CGLY_13900
Preferred namehsp18
PFAMsHSP20
Max annot lvl201174|Actinobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.56e-08
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,2IHVJ@201174|Actinobacteria,22NQW@1653|Corynebacteriaceae
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5672Gchil5672Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 645716..646192 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5672.t1.start1Gchil5672.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 645716..645718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5672.t1.CDS1Gchil5672.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 645716..646192 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5672.t1.exon1Gchil5672.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 645716..646192 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5672.t1.stop1Gchil5672.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 646190..646192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5672.t1Gchil5672.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 645716..646192 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5672.t1 ID=Gchil5672.t1|Name=Gchil5672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MEPLFPFSFPNRELRQLRQLADQMENRVRASDGTDKRVPNYEYHREQDKI
LLEVELPGVQKEQVGVEMRGSNLCISGRRFKASGLFVEEHKDDAADNGGT
DSKVEEGKSASMIYELQVKVGDSVDENRIKAEHKDGLLKMMIPLKTHPGS
RKIAITQG*
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spliced messenger RNA

>Gchil5672.t1 ID=Gchil5672.t1|Name=Gchil5672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000015_pilon:645716..646192+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCGCTTTTCCCGTTCTCCTTCCCCAACCGTGAGTTACGCCAGCT
CCGTCAACTGGCCGATCAGATGGAAAACCGCGTCAGGGCTTCCGACGGCA
CCGACAAGCGTGTGCCAAACTACGAATACCACCGAGAGCAAGACAAGATC
CTTTTGGAAGTTGAGCTTCCTGGCGTGCAAAAGGAGCAAGTCGGGGTTGA
GATGCGAGGATCCAATCTATGCATCAGCGGACGTCGTTTCAAGGCCAGCG
GGCTGTTCGTGGAGGAACACAAGGATGATGCCGCAGACAATGGTGGAACT
GACTCGAAAGTGGAAGAAGGAAAGAGCGCTAGTATGATATACGAGTTGCA
GGTCAAAGTAGGAGACAGTGTTGACGAAAACAGGATCAAAGCAGAGCACA
AAGATGGACTCCTGAAGATGATGATCCCGCTGAAAACCCACCCTGGCTCT
CGCAAAATTGCTATCACTCAAGGATAA
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protein sequence of Gchil5672.t1

>Gchil5672.t1 ID=Gchil5672.t1|Name=Gchil5672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MEPLFPFSFPNRELRQLRQLADQMENRVRASDGTDKRVPNYEYHREQDKI
LLEVELPGVQKEQVGVEMRGSNLCISGRRFKASGLFVEEHKDDAADNGGT
DSKVEEGKSASMIYELQVKVGDSVDENRIKAEHKDGLLKMMIPLKTHPGS
RKIAITQG*
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mRNA from alignment at tig00000015_pilon:645716..646192+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5672.t1 ID=Gchil5672.t1|Name=Gchil5672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000015_pilon:645716..646192+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCGCTTTTCCCGTTCTCCTTCCCCAACCGTGAGTTACGCCAGCT
CCGTCAACTGGCCGATCAGATGGAAAACCGCGTCAGGGCTTCCGACGGCA
CCGACAAGCGTGTGCCAAACTACGAATACCACCGAGAGCAAGACAAGATC
CTTTTGGAAGTTGAGCTTCCTGGCGTGCAAAAGGAGCAAGTCGGGGTTGA
GATGCGAGGATCCAATCTATGCATCAGCGGACGTCGTTTCAAGGCCAGCG
GGCTGTTCGTGGAGGAACACAAGGATGATGCCGCAGACAATGGTGGAACT
GACTCGAAAGTGGAAGAAGGAAAGAGCGCTAGTATGATATACGAGTTGCA
GGTCAAAGTAGGAGACAGTGTTGACGAAAACAGGATCAAAGCAGAGCACA
AAGATGGACTCCTGAAGATGATGATCCCGCTGAAAACCCACCCTGGCTCT
CGCAAAATTGCTATCACTCAAGGATAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:645716..646192+

>Gchil5672.t1 ID=Gchil5672.t1|Name=Gchil5672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000015_pilon:645716..646192+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCGCTTTTCCCGTTCTCCTTCCCCAACCGTGAGTTACGCCAGCT
CCGTCAACTGGCCGATCAGATGGAAAACCGCGTCAGGGCTTCCGACGGCA
CCGACAAGCGTGTGCCAAACTACGAATACCACCGAGAGCAAGACAAGATC
CTTTTGGAAGTTGAGCTTCCTGGCGTGCAAAAGGAGCAAGTCGGGGTTGA
GATGCGAGGATCCAATCTATGCATCAGCGGACGTCGTTTCAAGGCCAGCG
GGCTGTTCGTGGAGGAACACAAGGATGATGCCGCAGACAATGGTGGAACT
GACTCGAAAGTGGAAGAAGGAAAGAGCGCTAGTATGATATACGAGTTGCA
GGTCAAAGTAGGAGACAGTGTTGACGAAAACAGGATCAAAGCAGAGCACA
AAGATGGACTCCTGAAGATGATGATCCCGCTGAAAACCCACCCTGGCTCT
CGCAAAATTGCTATCACTCAAGGATAA
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