Gchil5663.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5663.t1
Unique NameGchil5663.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length703
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:616611..618719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5663Gchil5663Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 616611..618719 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5663.t1.stop1Gchil5663.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 616611..616613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5663.t1.CDS1Gchil5663.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 616611..618719 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5663.t1.exon1Gchil5663.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 616611..618719 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5663.t1.start1Gchil5663.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 618717..618719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5663.t1Gchil5663.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 616611..618719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5663.t1 ID=Gchil5663.t1|Name=Gchil5663.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=703bp
MSQRYYYNGCLIADINDLRNCLLSQSKPPPSNMTRVLLRPDMASLYQDLE
QETSSLDPVVARAVERIIVNTASGSIDLRPRPQLTSYTRNCAVHKLTHAF
NIIRKPRTHAVRRLPGLAHVPRPTSTAALLLISAAEKQQNLQRQTSLAMR
AMALELSTAATKQSSYTPSAPNSISIPNPSASRPNSEPAAANGIKPGEPK
VAINRNPNKPARPWRFIMPSRALLQSANRQALKSDKAVGLFSQSSIQQYH
PSALQLPVRVRTVRFTMPDPDVATEFKRAKALCESAVLIGGHLLERAKDE
LKAQNIEVNKGSIPEIIVQMLRSVEGSLEVIYVWSVLGDKNRDFYRSFIA
NVAEGHALINQVKAALDGEGFVCTQDISQEEMLQRQKQKRMNQLNQTRQA
ATALNAASQNSQVSRPAYTTNQLQEQIANGMAVQAAGDAKTTAVVDALQP
QGRDAQAKVLLQKESQKQRTQQMQKRRQQQQQQHQQHQQEQMRRQQQHQI
LKEQIQRQGHLHPIMQRQQPTSLGRSQMPHMGRIDKNGMNIHRSAGILRN
QLVSKGLGQTPNNTQISQELMASMGMHNPNLANLGTLSHSQMFPPQQLQQ
IQQHLRQQHLLQQRGIHGHKSPAPNSYGQETNLNAFDGQNLQSPGLPGGW
SAPMGFRGSTAADGGRGVAAKPMVGANAVNAARLPHQFTTENIEAPSHLG
KR*
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spliced messenger RNA

>Gchil5663.t1 ID=Gchil5663.t1|Name=Gchil5663.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00000015_pilon:616611..618719- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGCGATACTACTACAATGGTTGCCTAATTGCCGATATCAACGA
CTTGCGCAATTGTCTTTTATCACAATCGAAGCCACCCCCGAGCAACATGA
CACGGGTTCTACTGCGACCAGATATGGCAAGTCTGTACCAAGATCTAGAA
CAAGAAACCTCAAGCCTTGACCCAGTCGTTGCGCGCGCTGTCGAACGAAT
TATTGTGAATACCGCATCTGGTTCTATTGATTTACGTCCTCGACCTCAAC
TTACTTCTTACACGCGAAATTGCGCTGTACATAAGCTTACCCACGCCTTT
AACATCATTCGCAAGCCGAGAACACACGCCGTTCGCCGCCTGCCCGGACT
CGCCCATGTTCCACGACCTACTTCCACGGCTGCGCTTCTGCTTATTTCCG
CGGCAGAAAAGCAACAGAATCTGCAACGTCAGACGTCGCTCGCAATGCGC
GCAATGGCATTGGAACTGTCCACCGCCGCTACCAAGCAATCTTCCTACAC
CCCTTCGGCGCCTAATTCTATTTCTATCCCCAATCCCTCAGCATCACGAC
CCAACTCTGAGCCCGCTGCTGCGAATGGTATCAAACCTGGAGAGCCCAAA
GTCGCAATCAACCGCAATCCTAACAAGCCCGCTCGTCCATGGCGATTCAT
AATGCCGTCAAGGGCACTTCTGCAAAGCGCTAATCGGCAAGCCCTTAAAT
CGGATAAAGCTGTGGGGCTGTTTTCGCAATCGTCTATTCAACAGTATCAT
CCTAGTGCACTTCAACTTCCCGTGCGAGTTCGTACTGTGCGTTTCACGAT
GCCTGACCCAGATGTTGCCACTGAGTTCAAGAGGGCTAAAGCTCTGTGCG
AATCAGCCGTCTTAATAGGTGGGCACCTGCTAGAGAGGGCGAAAGACGAA
CTGAAAGCGCAGAATATTGAAGTCAATAAGGGTAGTATACCGGAGATCAT
TGTGCAGATGCTTCGCTCTGTAGAAGGATCTTTGGAAGTAATTTACGTCT
GGTCGGTACTGGGAGACAAGAATCGCGACTTTTATCGATCTTTTATCGCC
AACGTTGCAGAGGGCCATGCCCTCATTAATCAAGTCAAAGCTGCGTTGGA
CGGTGAAGGTTTTGTTTGTACTCAAGATATTAGCCAGGAAGAAATGCTCC
AAAGACAGAAACAGAAACGAATGAATCAGCTCAATCAGACCCGACAAGCA
GCTACAGCGTTGAATGCTGCTTCACAGAATTCTCAAGTTTCACGTCCTGC
GTACACGACCAACCAGCTACAAGAGCAAATAGCAAACGGAATGGCTGTTC
AGGCTGCAGGAGACGCCAAGACTACTGCAGTGGTAGATGCTTTACAACCC
CAAGGGCGTGATGCCCAAGCAAAGGTACTACTACAAAAGGAGAGCCAGAA
GCAAAGAACGCAGCAGATGCAGAAACGAAGGCAGCAACAGCAGCAGCAGC
ATCAACAACACCAGCAGGAACAGATGCGCCGGCAGCAACAACATCAAATT
TTGAAGGAACAGATTCAGAGGCAAGGTCACTTGCATCCGATCATGCAACG
CCAACAACCAACGAGCCTGGGAAGATCCCAGATGCCGCACATGGGAAGGA
TTGACAAGAATGGGATGAATATTCATCGCTCCGCTGGAATACTGAGAAAC
CAATTAGTCTCCAAAGGTCTCGGACAAACGCCAAACAATACACAGATATC
ACAGGAACTAATGGCCTCAATGGGTATGCACAATCCGAACTTGGCCAACC
TGGGCACTCTGTCGCATTCCCAAATGTTCCCACCCCAACAACTTCAACAA
ATTCAGCAACATTTGAGACAACAGCATTTACTGCAGCAGCGGGGCATTCA
TGGACATAAGAGTCCTGCGCCCAACTCATATGGCCAGGAAACCAATCTGA
ATGCGTTTGATGGGCAAAATCTCCAGTCACCTGGTTTGCCCGGAGGTTGG
TCTGCTCCAATGGGATTCAGAGGCTCAACGGCCGCTGATGGAGGTAGAGG
TGTTGCAGCGAAACCAATGGTTGGCGCAAATGCGGTAAACGCAGCTCGAT
TGCCCCACCAGTTCACCACCGAAAATATTGAAGCTCCTTCACACCTTGGA
AAGCGGTAG
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protein sequence of Gchil5663.t1

>Gchil5663.t1 ID=Gchil5663.t1|Name=Gchil5663.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=703bp
MSQRYYYNGCLIADINDLRNCLLSQSKPPPSNMTRVLLRPDMASLYQDLE
QETSSLDPVVARAVERIIVNTASGSIDLRPRPQLTSYTRNCAVHKLTHAF
NIIRKPRTHAVRRLPGLAHVPRPTSTAALLLISAAEKQQNLQRQTSLAMR
AMALELSTAATKQSSYTPSAPNSISIPNPSASRPNSEPAAANGIKPGEPK
VAINRNPNKPARPWRFIMPSRALLQSANRQALKSDKAVGLFSQSSIQQYH
PSALQLPVRVRTVRFTMPDPDVATEFKRAKALCESAVLIGGHLLERAKDE
LKAQNIEVNKGSIPEIIVQMLRSVEGSLEVIYVWSVLGDKNRDFYRSFIA
NVAEGHALINQVKAALDGEGFVCTQDISQEEMLQRQKQKRMNQLNQTRQA
ATALNAASQNSQVSRPAYTTNQLQEQIANGMAVQAAGDAKTTAVVDALQP
QGRDAQAKVLLQKESQKQRTQQMQKRRQQQQQQHQQHQQEQMRRQQQHQI
LKEQIQRQGHLHPIMQRQQPTSLGRSQMPHMGRIDKNGMNIHRSAGILRN
QLVSKGLGQTPNNTQISQELMASMGMHNPNLANLGTLSHSQMFPPQQLQQ
IQQHLRQQHLLQQRGIHGHKSPAPNSYGQETNLNAFDGQNLQSPGLPGGW
SAPMGFRGSTAADGGRGVAAKPMVGANAVNAARLPHQFTTENIEAPSHLG
KR*
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mRNA from alignment at tig00000015_pilon:616611..618719-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5663.t1 ID=Gchil5663.t1|Name=Gchil5663.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00000015_pilon:616611..618719- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGCGATACTACTACAATGGTTGCCTAATTGCCGATATCAACGA
CTTGCGCAATTGTCTTTTATCACAATCGAAGCCACCCCCGAGCAACATGA
CACGGGTTCTACTGCGACCAGATATGGCAAGTCTGTACCAAGATCTAGAA
CAAGAAACCTCAAGCCTTGACCCAGTCGTTGCGCGCGCTGTCGAACGAAT
TATTGTGAATACCGCATCTGGTTCTATTGATTTACGTCCTCGACCTCAAC
TTACTTCTTACACGCGAAATTGCGCTGTACATAAGCTTACCCACGCCTTT
AACATCATTCGCAAGCCGAGAACACACGCCGTTCGCCGCCTGCCCGGACT
CGCCCATGTTCCACGACCTACTTCCACGGCTGCGCTTCTGCTTATTTCCG
CGGCAGAAAAGCAACAGAATCTGCAACGTCAGACGTCGCTCGCAATGCGC
GCAATGGCATTGGAACTGTCCACCGCCGCTACCAAGCAATCTTCCTACAC
CCCTTCGGCGCCTAATTCTATTTCTATCCCCAATCCCTCAGCATCACGAC
CCAACTCTGAGCCCGCTGCTGCGAATGGTATCAAACCTGGAGAGCCCAAA
GTCGCAATCAACCGCAATCCTAACAAGCCCGCTCGTCCATGGCGATTCAT
AATGCCGTCAAGGGCACTTCTGCAAAGCGCTAATCGGCAAGCCCTTAAAT
CGGATAAAGCTGTGGGGCTGTTTTCGCAATCGTCTATTCAACAGTATCAT
CCTAGTGCACTTCAACTTCCCGTGCGAGTTCGTACTGTGCGTTTCACGAT
GCCTGACCCAGATGTTGCCACTGAGTTCAAGAGGGCTAAAGCTCTGTGCG
AATCAGCCGTCTTAATAGGTGGGCACCTGCTAGAGAGGGCGAAAGACGAA
CTGAAAGCGCAGAATATTGAAGTCAATAAGGGTAGTATACCGGAGATCAT
TGTGCAGATGCTTCGCTCTGTAGAAGGATCTTTGGAAGTAATTTACGTCT
GGTCGGTACTGGGAGACAAGAATCGCGACTTTTATCGATCTTTTATCGCC
AACGTTGCAGAGGGCCATGCCCTCATTAATCAAGTCAAAGCTGCGTTGGA
CGGTGAAGGTTTTGTTTGTACTCAAGATATTAGCCAGGAAGAAATGCTCC
AAAGACAGAAACAGAAACGAATGAATCAGCTCAATCAGACCCGACAAGCA
GCTACAGCGTTGAATGCTGCTTCACAGAATTCTCAAGTTTCACGTCCTGC
GTACACGACCAACCAGCTACAAGAGCAAATAGCAAACGGAATGGCTGTTC
AGGCTGCAGGAGACGCCAAGACTACTGCAGTGGTAGATGCTTTACAACCC
CAAGGGCGTGATGCCCAAGCAAAGGTACTACTACAAAAGGAGAGCCAGAA
GCAAAGAACGCAGCAGATGCAGAAACGAAGGCAGCAACAGCAGCAGCAGC
ATCAACAACACCAGCAGGAACAGATGCGCCGGCAGCAACAACATCAAATT
TTGAAGGAACAGATTCAGAGGCAAGGTCACTTGCATCCGATCATGCAACG
CCAACAACCAACGAGCCTGGGAAGATCCCAGATGCCGCACATGGGAAGGA
TTGACAAGAATGGGATGAATATTCATCGCTCCGCTGGAATACTGAGAAAC
CAATTAGTCTCCAAAGGTCTCGGACAAACGCCAAACAATACACAGATATC
ACAGGAACTAATGGCCTCAATGGGTATGCACAATCCGAACTTGGCCAACC
TGGGCACTCTGTCGCATTCCCAAATGTTCCCACCCCAACAACTTCAACAA
ATTCAGCAACATTTGAGACAACAGCATTTACTGCAGCAGCGGGGCATTCA
TGGACATAAGAGTCCTGCGCCCAACTCATATGGCCAGGAAACCAATCTGA
ATGCGTTTGATGGGCAAAATCTCCAGTCACCTGGTTTGCCCGGAGGTTGG
TCTGCTCCAATGGGATTCAGAGGCTCAACGGCCGCTGATGGAGGTAGAGG
TGTTGCAGCGAAACCAATGGTTGGCGCAAATGCGGTAAACGCAGCTCGAT
TGCCCCACCAGTTCACCACCGAAAATATTGAAGCTCCTTCACACCTTGGA
AAGCGGTAG
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Coding sequence (CDS) from alignment at tig00000015_pilon:616611..618719-

>Gchil5663.t1 ID=Gchil5663.t1|Name=Gchil5663.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2109bp|location=Sequence derived from alignment at tig00000015_pilon:616611..618719- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGCGATACTACTACAATGGTTGCCTAATTGCCGATATCAACGA
CTTGCGCAATTGTCTTTTATCACAATCGAAGCCACCCCCGAGCAACATGA
CACGGGTTCTACTGCGACCAGATATGGCAAGTCTGTACCAAGATCTAGAA
CAAGAAACCTCAAGCCTTGACCCAGTCGTTGCGCGCGCTGTCGAACGAAT
TATTGTGAATACCGCATCTGGTTCTATTGATTTACGTCCTCGACCTCAAC
TTACTTCTTACACGCGAAATTGCGCTGTACATAAGCTTACCCACGCCTTT
AACATCATTCGCAAGCCGAGAACACACGCCGTTCGCCGCCTGCCCGGACT
CGCCCATGTTCCACGACCTACTTCCACGGCTGCGCTTCTGCTTATTTCCG
CGGCAGAAAAGCAACAGAATCTGCAACGTCAGACGTCGCTCGCAATGCGC
GCAATGGCATTGGAACTGTCCACCGCCGCTACCAAGCAATCTTCCTACAC
CCCTTCGGCGCCTAATTCTATTTCTATCCCCAATCCCTCAGCATCACGAC
CCAACTCTGAGCCCGCTGCTGCGAATGGTATCAAACCTGGAGAGCCCAAA
GTCGCAATCAACCGCAATCCTAACAAGCCCGCTCGTCCATGGCGATTCAT
AATGCCGTCAAGGGCACTTCTGCAAAGCGCTAATCGGCAAGCCCTTAAAT
CGGATAAAGCTGTGGGGCTGTTTTCGCAATCGTCTATTCAACAGTATCAT
CCTAGTGCACTTCAACTTCCCGTGCGAGTTCGTACTGTGCGTTTCACGAT
GCCTGACCCAGATGTTGCCACTGAGTTCAAGAGGGCTAAAGCTCTGTGCG
AATCAGCCGTCTTAATAGGTGGGCACCTGCTAGAGAGGGCGAAAGACGAA
CTGAAAGCGCAGAATATTGAAGTCAATAAGGGTAGTATACCGGAGATCAT
TGTGCAGATGCTTCGCTCTGTAGAAGGATCTTTGGAAGTAATTTACGTCT
GGTCGGTACTGGGAGACAAGAATCGCGACTTTTATCGATCTTTTATCGCC
AACGTTGCAGAGGGCCATGCCCTCATTAATCAAGTCAAAGCTGCGTTGGA
CGGTGAAGGTTTTGTTTGTACTCAAGATATTAGCCAGGAAGAAATGCTCC
AAAGACAGAAACAGAAACGAATGAATCAGCTCAATCAGACCCGACAAGCA
GCTACAGCGTTGAATGCTGCTTCACAGAATTCTCAAGTTTCACGTCCTGC
GTACACGACCAACCAGCTACAAGAGCAAATAGCAAACGGAATGGCTGTTC
AGGCTGCAGGAGACGCCAAGACTACTGCAGTGGTAGATGCTTTACAACCC
CAAGGGCGTGATGCCCAAGCAAAGGTACTACTACAAAAGGAGAGCCAGAA
GCAAAGAACGCAGCAGATGCAGAAACGAAGGCAGCAACAGCAGCAGCAGC
ATCAACAACACCAGCAGGAACAGATGCGCCGGCAGCAACAACATCAAATT
TTGAAGGAACAGATTCAGAGGCAAGGTCACTTGCATCCGATCATGCAACG
CCAACAACCAACGAGCCTGGGAAGATCCCAGATGCCGCACATGGGAAGGA
TTGACAAGAATGGGATGAATATTCATCGCTCCGCTGGAATACTGAGAAAC
CAATTAGTCTCCAAAGGTCTCGGACAAACGCCAAACAATACACAGATATC
ACAGGAACTAATGGCCTCAATGGGTATGCACAATCCGAACTTGGCCAACC
TGGGCACTCTGTCGCATTCCCAAATGTTCCCACCCCAACAACTTCAACAA
ATTCAGCAACATTTGAGACAACAGCATTTACTGCAGCAGCGGGGCATTCA
TGGACATAAGAGTCCTGCGCCCAACTCATATGGCCAGGAAACCAATCTGA
ATGCGTTTGATGGGCAAAATCTCCAGTCACCTGGTTTGCCCGGAGGTTGG
TCTGCTCCAATGGGATTCAGAGGCTCAACGGCCGCTGATGGAGGTAGAGG
TGTTGCAGCGAAACCAATGGTTGGCGCAAATGCGGTAAACGCAGCTCGAT
TGCCCCACCAGTTCACCACCGAAAATATTGAAGCTCCTTCACACCTTGGA
AAGCGGTAG
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