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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704351.1 |
| Preferred name | PCL1 |
| PFAMs | Myb_DNA-binding |
| Max annot lvl | 2759|Eukaryota |
| GOs | GO:0000156,GO:0000160,GO:0001101,GO:0001763,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007623,GO:0008150,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009723,GO:0009725,GO:0009735,GO:0009736,GO:0009755,GO:0009873,GO:0009888,GO:0009889,GO:0009909,GO:0009933,GO:0009966,GO:0009987,GO:0010014,GO:0010015,GO:0010016,GO:0010033,GO:0010035,GO:0010073,GO:0010074,GO:0010075,GO:0010082,GO:0010119,GO:0010150,GO:0010223,GO:0010346,GO:0010380,GO:0010468,GO:0010492,GO:0010556,GO:0010646,GO:0019219,GO:0019222,GO:0019827,GO:0022622,GO:0023051,GO:0023052,GO:0031323,GO:0031326,GO:0031537,GO:0032501,GO:0032502,GO:0032870,GO:0035556,GO:0040008,GO:0042221,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048511,GO:0048518,GO:0048532,GO:0048580,GO:0048583,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051193,GO:0051239,GO:0051252,GO:0051716,GO:0060089,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071368,GO:0071369,GO:0071495,GO:0080022,GO:0080036,GO:0080050,GO:0080090,GO:0080113,GO:0090056,GO:0090506,GO:0090693,GO:0098727,GO:0099402,GO:0140110,GO:1901401,GO:1901463,GO:1901700,GO:1903506,GO:1905392,GO:1905393,GO:2000026,GO:2000112,GO:2000241,GO:2000280,GO:2001141 |
| Evalue | 1.26e-19 |
| EggNOG OGs | 2C4RN@1|root,2RIEW@2759|Eukaryota |
| Description | DNA-binding transcription factor activity |
| COG category | K |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil5660.t1 ID=Gchil5660.t1|Name=Gchil5660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp MGRDDEDEDDDADGDAVAAHSAAAALSVAASSAAAQLSSALRLVPAPLAA AARVAAATAAGAVSTPLSPDSSSPPLLLPSPPDHDDDPLLELDFSWSHVL DNLLTDTDYLQLPPDAAATAAASADAVVDAAPHAAAVDPFAAASPPRAPT AVAASPPEELAREADARRGNRNSRKRRASTSPPPAKRARARPPSSPASPV KIAPAKSPPTAASAARASASASASVSSAHLALGAFPLALAPSQRVRPHKK RLVWTPELHERFISAVNSVGLRNSVPKMLVSIMNVDGLTTEHVKSHLQKY RNSLKKEAADEVRATNQLNAPPWHLAAPPHRAVCLPQDARMGACGTQRNA AAAPLAADTTGAHAIAAAAAQRAQPRNPIAKPASPTRKPDTRMRSACQPV ASENASLSGSVSAAAAVGGSAPPPVAPKEPEQAPKPAANSSSRAVGVREN DHAENSTADDAHASNKRKMQAAKVEAIMTDSAANSAKDTEMEMIEEKILQ LQLRVQKILHRSIRMQRRMEQKQCTAAVSDGGGAPSTESGKQCDGRGERE QRETNMHDGQTESVVAEGEVARVADRDMQELLDEQMVLQRELAAHRVMVS RMKESPSTNNNSHGSGRRDEALRGRARGSEARGSEAQGCEAQGCEAQGCE AQGSEAEERQSAGVEAKAAVECKQAMPNNLNDG* back to topspliced messenger RNA >Gchil5660.t1 ID=Gchil5660.t1|Name=Gchil5660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000015_pilon:607478..610270+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGCGcgacgacgaagacgaagacgatgacgccgacggagacgCCGT AGCTGCGCACTCCGCCGCCGCCGCGCTCTCCGTCGCCGCGAGCTCCGCCG CCGCGCAGCTCAGCTCCGCGCTGCGTCTCGTACCTGCGCCTTTGGCAGCT GCGGCGCGCGTCGCCGCCGCTACGGCCGCCGGCGCCGTATCGACGCCGCT GTCGCCCGACTCGTCGTCGCCGCCGCTGCTGCTGCCGTCGCCGCCCGACC ACGACGACGACCCCCTGCTAGAGCTGGACTTTTCGTGGTCGCACGTGCTC GACAATCTCCTCACCGACACCGACTACCTGCAGCTCCCACCCGACGCCGC CGCAACCGCCGCCGCCTCTGCCGATGCGGTCGTGGATGCGGCGCCGCACG CCGCCGCCGTCGACCCGTTCGCCGCCGCCTCGCCGCCTCGCGCGCCCACC GCTGTCGCCGCATCCCCCCCGGAGGAGCTCGCGCGAGAGGCCGACGCGCG TCGCGGCAACCGCAACTCGCGGAAACGCCGCGCGTCCACATCGCCTCCAC CGGCCAAGCGCGCGCGCGCGCGACCACCATCATCGCCAGCGTCGCCCGTG AAGATCGCGCCTGCAAAATCCCCGCCTAcggcggcatcggcggcgcgcgc gtcggcgtcagcgtcggcgtcggtgtcgtcgGCACATCTGGCGTTAGGTG CCTTTCCGCTGGCGCTTGCGCCTTCGCAGCGCGTTCGCCCGCACAAGAAG CGCCTCGTGTGGACGCCCGAGCTGCACGAGCGCTTCATCAGCGCCGTCAA CTCTGTCGGGCTCAGAAACTCCGTCCCGAAGATGTTAGTATCTATCATGA ATGTGGACGGGCTCACTACCGAGCATGTCAAGAGCCACTTGCAAAAGTAT CGAAACTCTCTCAAGAAGGAGGCTGCGGACGAGGTACGCGCCACTAATCA GCTTAATGCACCGCCGTGGCACTTGGCTGCACCGCCCCATCGCGCGGTGT GCCTGCCGCAAGACGCGCGTATGGGCGCGTGTGGCACCCAGCGCAAtgcg gctgccgcgccgcttgctgcagatactactggtgctcatgcaattgcggc ggctgcagcgcagcgtgcGCAACCACGCAACCCCATCGCCAAGCCAGCGT CGCCAACACGTAAGCCTGACACGCGCATGCGCAGCGCTTGCCAGCCTGTT GCCAGCGAGAACGCCTCCCTCTCTGGTTCAGTGTCTGCTGCAGCCGCCGT TGGTGGCAGTGCACCGCCGCCTGTGGCGCCCAAAGAGCCTGAGCAAGCGC CCAAGCCCGCGGCGAACAGCAGCTCTAGGGCTGTCGGAGTGCGCGAAAAC GACCATGCTGAAAACAGCACCGCTGACGATGCGCATGCATCGAACAAGCG CAAGATGCAGGCAGCTAAGGTGGAGGCAATCATGACAGACAGCGCGGCGA ATAGCGCAAAGGACACTGAAATGGAGATGATCGAAGAGAAGATTTTGCAG CTACAGCTGCGGGTGCAGAAGATATTGCACCGCTCTATCAGAATGCAACG GCGCATGGAACAAAAACAATGCACAGCGGCCGTGTCTGACGGTGGTGGCG CACCGTCCACAGAGTCGGGCAAGCAGTGTGATGGAAGAGGCGAGAGGGAG CAGCGCGAGACCAACATGCACGACGGCCAGACGGAAAGCGTGGTCGCAGA GGGTGAGGTGGCGCGCGTGGCGGACAGGGACATGCAGGAACTGCTGGATG AGCAGATGGTTCTGCAGAGAGAGCTGGCGGCGCACCGCGTCATGGTGAGC AGGATGAAGGAGTCGCCATCGACCAACAACAACAGCCACGGCAGCGGCCG CCGTGACGAAGCGCTCCGTGGCAGAGCGCGAGGCAGTGAGGCGCGAGGCA GTGAAGCGCAAGGCTGTGAAGCGCAAGGCTGTGAAGCGCAAGGCTGTGAA GCGCAAGGCAGTGAAGCGGAAGAGCGACAATCGGCCGGGGTCGAAGCGAA AGCGGCCGTGGAATGCAAGCAGGCTATGCCAAACAACCTCAACGACGGGT GA back to topprotein sequence of Gchil5660.t1 >Gchil5660.t1 ID=Gchil5660.t1|Name=Gchil5660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=684bp
MGRDDEDEDDDADGDAVAAHSAAAALSVAASSAAAQLSSALRLVPAPLAA AARVAAATAAGAVSTPLSPDSSSPPLLLPSPPDHDDDPLLELDFSWSHVL DNLLTDTDYLQLPPDAAATAAASADAVVDAAPHAAAVDPFAAASPPRAPT AVAASPPEELAREADARRGNRNSRKRRASTSPPPAKRARARPPSSPASPV KIAPAKSPPTAASAARASASASASVSSAHLALGAFPLALAPSQRVRPHKK RLVWTPELHERFISAVNSVGLRNSVPKMLVSIMNVDGLTTEHVKSHLQKY RNSLKKEAADEVRATNQLNAPPWHLAAPPHRAVCLPQDARMGACGTQRNA AAAPLAADTTGAHAIAAAAAQRAQPRNPIAKPASPTRKPDTRMRSACQPV ASENASLSGSVSAAAAVGGSAPPPVAPKEPEQAPKPAANSSSRAVGVREN DHAENSTADDAHASNKRKMQAAKVEAIMTDSAANSAKDTEMEMIEEKILQ LQLRVQKILHRSIRMQRRMEQKQCTAAVSDGGGAPSTESGKQCDGRGERE QRETNMHDGQTESVVAEGEVARVADRDMQELLDEQMVLQRELAAHRVMVS RMKESPSTNNNSHGSGRRDEALRGRARGSEARGSEAQGCEAQGCEAQGCE AQGSEAEERQSAGVEAKAAVECKQAMPNNLNDG* back to topmRNA from alignment at tig00000015_pilon:607478..610270+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil5660.t1 ID=Gchil5660.t1|Name=Gchil5660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2793bp|location=Sequence derived from alignment at tig00000015_pilon:607478..610270+ (Gracilaria chilensis NLEC103_M9 male) ATGGGGCGcgacgacgaagacgaagacgatgacgccgacggagacgCCGT
AGCTGCGCACTCCGCCGCCGCCGCGCTCTCCGTCGCCGCGAGCTCCGCCG
CCGCGCAGCTCAGCTCCGCGCTGCGTCTCGTACCTGCGCCTTTGGCAGCT
GCGGCGCGCGTCGCCGCCGCTACGGCCGCCGGCGCCGTATCGACGCCGCT
GTCGCCCGACTCGTCGTCGCCGCCGCTGCTGCTGCCGTCGCCGCCCGACC
ACGACGACGACCCCCTGCTAGAGCTGGACTTTTCGTGGTCGCACGTGCTC
GACAATCTCCTCACCGACACCGACTACCTGCAGCTCCCACCCGACGCCGC
CGCAACCGCCGCCGCCTCTGCCGATGCGGTCGTGGATGCGGCGCCGCACG
CCGCCGCCGTCGACCCGTTCGCCGCCGCCTCGCCGCCTCGCGCGCCCACC
GCTGTCGCCGCATCCCCCCCGGAGGAGCTCGCGCGAGAGGCCGACGCGCG
TCGCGGCAACCGCAACTCGCGGAAACGCCGCGCGTCCACATCGCCTCCAC
CGGCCAAGCGCGCGCGCGCGCGACCACCATCATCGCCAGCGTCGCCCGTG
AAGATCGCGCCTGCAAAATCCCCGCCTAcggcggcatcggcggcgcgcgc
gtcggcgtcagcgtcggcgtcggtgtcgtcgGCACATCTGGCGTTAGGTG
CCTTTCCGCTGGCGCTTGCGCCTTCGCAGCGCGTGTCTTTGTCCGTgtcg
gcctcggccggcgccgtcacgccgcagttgctgtcgctgccgccgttgcc
gccgcagctgtacccgctgcagtaccaccacgctcctccccctccccctc
cgccaccgctgccgccgccgcgctcgggcgaggccacgccgcgctccgcc
gcctccgtgtcgcgcccgctgcccgtgccgcccgtgccgcccgtaccgta
cgacgagtttaccgtcatgtccttcttccatatggcgcagcagatgtacg
cctccgccctggcctccgccgcctccgccgcctacccgccgccgccatcg
cagttggcccctgcccatccgccgccgccgccgccgtcgccgtcgccgtc
accttcgccgtcgccgccgcagcctacgccgccgccgccactgcagcaac
accctctgccaccgccgccaccgccgccgcccgctcacgtctcctccgct
gtcggcgtgttgcaccaacacgcgcaacagcgcgccatccctcctctcaa
gccggcccgtctcgttccgcaccctttccttggccgcttgcagctgcagt
gcgaatccaataccgccagcacccagccgtcagcctcccctgccgtgccg
ttcaagaacagcgctagttatgacaacaccaccagcaccagcatcaccat
caacaacccgccccccgcctccaccaccccgcctatctgtaccgcggcgt
cgtcctccgccccgtccacgcACAGTCGCCCGCACAAGAAGCGCCTCGTG
TGGACGCCCGAGCTGCACGAGCGCTTCATCAGCGCCGTCAACTCTGTCGG
GCTCAGAAACTCCGTCCCGAAGATGTTAGTATCTATCATGAATGTGGACG
GGCTCACTACCGAGCATGTCAAGAGCCACTTGCAAAAGTATCGAAACTCT
CTCAAGAAGGAGGCTGCGGACGAGGTACGCGCCACTAATCAGCTTAATGC
ACCGCCGTGGCACTTGGCTGCACCGCCCCATCGCGCGGTGTGCCTGCCGC
AAGACGCGCGTATGGGCGCGTGTGGCACCCAGCGCAAtgcggctgccgcg
ccgcttgctgcagatactactggtgctcatgcaattgcggcggctgcagc
gcagcgtgcGCAACCACGCAACCCCATCGCCAAGCCAGCGTCGCCAACAC
GTAAGCCTGACACGCGCATGCGCAGCGCTTGCCAGCCTGTTGCCAGCGAG
AACGCCTCCCTCTCTGGTTCAGTGTCTGCTGCAGCCGCCGTTGGTGGCAG
TGCACCGCCGCCTGTGGCGCCCAAAGAGCCTGAGCAAGCGCCCAAGCCCG
CGGCGAACAGCAGCTCTAGGGCTGTCGGAGTGCGCGAAAACGACCATGCT
GAAAACAGCACCGCTGACGATGCGCATGCATCGAACAAGCGCAAGATGCA
GGCAGCTAAGGTGGAGGCAATCATGACAGACAGCGCGGCGAATAGCGCAA
AGGACACTGAAATGGAGATGATCGAAGAGAAGATTTTGCAGCTACAGCTG
CGGGTGCAGAAGATATTGCACCGCTCTATCAGAATGCAACGGCGCATGGA
ACAAAAACAATGCACAGCGGCCGTGTCTGACGGTGGTGGCGCACCGTCCA
CAGAGTCGGGCAAGCAGTGTGATGGAAGAGGCGAGAGGGAGCAGCGCGAG
ACCAACATGCACGACGGCCAGACGGAAAGCGTGGTCGCAGAGGGTGAGGT
GGCGCGCGTGGCGGACAGGGACATGCAGGAACTGCTGGATGAGCAGATGG
TTCTGCAGAGAGAGCTGGCGGCGCACCGCGTCATGGTGAGCAGGATGAAG
GAGTCGCCATCGACCAACAACAACAGCCACGGCAGCGGCCGCCGTGACGA
AGCGCTCCGTGGCAGAGCGCGAGGCAGTGAGGCGCGAGGCAGTGAAGCGC
AAGGCTGTGAAGCGCAAGGCTGTGAAGCGCAAGGCTGTGAAGCGCAAGGC
AGTGAAGCGGAAGAGCGACAATCGGCCGGGGTCGAAGCGAAAGCGGCCGT
GGAATGCAAGCAGGCTATGCCAAACAACCTCAACGACGGGTGA back to topCoding sequence (CDS) from alignment at tig00000015_pilon:607478..610270+ >Gchil5660.t1 ID=Gchil5660.t1|Name=Gchil5660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2052bp|location=Sequence derived from alignment at tig00000015_pilon:607478..610270+ (Gracilaria chilensis NLEC103_M9 male) ATGGGGCGcgacgacgaagacgaagacgatgacgccgacggagacgCCGT AGCTGCGCACTCCGCCGCCGCCGCGCTCTCCGTCGCCGCGAGCTCCGCCG CCGCGCAGCTCAGCTCCGCGCTGCGTCTCGTACCTGCGCCTTTGGCAGCT GCGGCGCGCGTCGCCGCCGCTACGGCCGCCGGCGCCGTATCGACGCCGCT GTCGCCCGACTCGTCGTCGCCGCCGCTGCTGCTGCCGTCGCCGCCCGACC ACGACGACGACCCCCTGCTAGAGCTGGACTTTTCGTGGTCGCACGTGCTC GACAATCTCCTCACCGACACCGACTACCTGCAGCTCCCACCCGACGCCGC CGCAACCGCCGCCGCCTCTGCCGATGCGGTCGTGGATGCGGCGCCGCACG CCGCCGCCGTCGACCCGTTCGCCGCCGCCTCGCCGCCTCGCGCGCCCACC GCTGTCGCCGCATCCCCCCCGGAGGAGCTCGCGCGAGAGGCCGACGCGCG TCGCGGCAACCGCAACTCGCGGAAACGCCGCGCGTCCACATCGCCTCCAC CGGCCAAGCGCGCGCGCGCGCGACCACCATCATCGCCAGCGTCGCCCGTG AAGATCGCGCCTGCAAAATCCCCGCCTAcggcggcatcggcggcgcgcgc gtcggcgtcagcgtcggcgtcggtgtcgtcgGCACATCTGGCGTTAGGTG CCTTTCCGCTGGCGCTTGCGCCTTCGCAGCGCGTTCGCCCGCACAAGAAG CGCCTCGTGTGGACGCCCGAGCTGCACGAGCGCTTCATCAGCGCCGTCAA CTCTGTCGGGCTCAGAAACTCCGTCCCGAAGATGTTAGTATCTATCATGA ATGTGGACGGGCTCACTACCGAGCATGTCAAGAGCCACTTGCAAAAGTAT CGAAACTCTCTCAAGAAGGAGGCTGCGGACGAGGTACGCGCCACTAATCA GCTTAATGCACCGCCGTGGCACTTGGCTGCACCGCCCCATCGCGCGGTGT GCCTGCCGCAAGACGCGCGTATGGGCGCGTGTGGCACCCAGCGCAAtgcg gctgccgcgccgcttgctgcagatactactggtgctcatgcaattgcggc ggctgcagcgcagcgtgcGCAACCACGCAACCCCATCGCCAAGCCAGCGT CGCCAACACGTAAGCCTGACACGCGCATGCGCAGCGCTTGCCAGCCTGTT GCCAGCGAGAACGCCTCCCTCTCTGGTTCAGTGTCTGCTGCAGCCGCCGT TGGTGGCAGTGCACCGCCGCCTGTGGCGCCCAAAGAGCCTGAGCAAGCGC CCAAGCCCGCGGCGAACAGCAGCTCTAGGGCTGTCGGAGTGCGCGAAAAC GACCATGCTGAAAACAGCACCGCTGACGATGCGCATGCATCGAACAAGCG CAAGATGCAGGCAGCTAAGGTGGAGGCAATCATGACAGACAGCGCGGCGA ATAGCGCAAAGGACACTGAAATGGAGATGATCGAAGAGAAGATTTTGCAG CTACAGCTGCGGGTGCAGAAGATATTGCACCGCTCTATCAGAATGCAACG GCGCATGGAACAAAAACAATGCACAGCGGCCGTGTCTGACGGTGGTGGCG CACCGTCCACAGAGTCGGGCAAGCAGTGTGATGGAAGAGGCGAGAGGGAG CAGCGCGAGACCAACATGCACGACGGCCAGACGGAAAGCGTGGTCGCAGA GGGTGAGGTGGCGCGCGTGGCGGACAGGGACATGCAGGAACTGCTGGATG AGCAGATGGTTCTGCAGAGAGAGCTGGCGGCGCACCGCGTCATGGTGAGC AGGATGAAGGAGTCGCCATCGACCAACAACAACAGCCACGGCAGCGGCCG CCGTGACGAAGCGCTCCGTGGCAGAGCGCGAGGCAGTGAGGCGCGAGGCA GTGAAGCGCAAGGCTGTGAAGCGCAAGGCTGTGAAGCGCAAGGCTGTGAA GCGCAAGGCAGTGAAGCGGAAGAGCGACAATCGGCCGGGGTCGAAGCGAA AGCGGCCGTGGAATGCAAGCAGGCTATGCCAAACAACCTCAACGACGGGT GA back to top
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