Gchil5657.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5657.t1
Unique NameGchil5657.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:584315..585649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004998446.1
PFAMsMyb_DNA-binding
Max annot lvl33154|Opisthokonta
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Evalue9.02e-28
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,38EUR@33154|Opisthokonta
DescriptionV-myb avian myeloblastosis viral oncogene
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5657Gchil5657Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 584315..585649 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5657.t1.stop1Gchil5657.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 584315..584317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5657.t1.CDS1Gchil5657.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 584315..585649 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5657.t1.exon1Gchil5657.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 584315..585649 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5657.t1.start1Gchil5657.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 585647..585649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5657.t1Gchil5657.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 584315..585649 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5657.t1 ID=Gchil5657.t1|Name=Gchil5657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=445bp
MTPHAIRPPSEQPPAVHSPPHPPLPRRRPAKPVGALPPKPASYGASSSST
RPTSSAPSPPAKPCGRRSPSWTPEEDTKLTTLVSKYISKPPSIIAPNTWS
RVAHHLPNRTGKQCRERYLNQLRPGIRRDPWTMHEERILHQFHARLGNKW
VAIARHLPGRTDNCVKNHWNSMLRKRQRRHAALKLTEKQVCHTLSRSNSS
PLSPHSSSARQNTTPSCPQSATPSEMSSHLNDFASSGIPSPFTVSSPITP
RRDTKLQISSLVATASATQTLVCNSLHTITTSHSHSDLRLHHNKSNSALS
ALTSFVPSPSTTTPETHIGSQLTTPSKTVTNTPQTNHQRVLSLHTPSQST
SRAKLSHTPVPFFFSPDKPPEHILYTQEIETDSGGTSPPIPLLDRPELHS
GDNILRTCQRKPIAKKPPSRHVPTNALAALAAAASSIPLSPPRP*
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spliced messenger RNA

>Gchil5657.t1 ID=Gchil5657.t1|Name=Gchil5657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000015_pilon:584315..585649- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACCGCATGCCATCCGTCCCCCCTCCGAGCAGCCGCCCGCTGTTCA
CTCCCCGCCGCACCCGCCTCTCCCTCGCCGTCGCCCCGCAAAGCCGGTCG
GCGCCTTGCCGCCCAAGCCTGCGTCTTACGGCGCTTCGTCATCGTCCACT
CGCCCCACTTCGTCCGCCCCGTCACCGCCTGCCAAACCGTGTGGCAGAAG
AAGTCCAAGCTGGACGCCGGAAGAGGATACAAAACTCACAACCCTCGTCT
CCAAATATATCTCTAAACCGCCCTCTATCATTGCTCCTAACACCTGGAGT
CGAGTCGCTCATCATCTGCCGAACCGTACCGGAAAACAATGCCGCGAGAG
ATATCTCAATCAGCTCCGACCTGGCATTCGACGTGACCCGTGGACTATGC
ATGAAGAGCGCATCTTGCATCAATTCCATGCCCGCCTGGGCAACAAATGG
GTTGCAATTGCCAGGCACTTGCCCGGTCGAACCGATAACTGCGTCAAGAA
TCATTGGAATTCCATGCTTCGAAAGCGCCAGAGAAGGCACGCAGCCTTGA
AACTCACCGAGAAACAAGTGTGCCACACCCTCTCGCGCTCAAATTCCTCT
CCTTTGTCACCTCATTCTTCTTCCGCCCGCCAAAACACCACCCCCTCATG
CCCGCAAAGTGCGACACCCTCTGAAATGTCCTCCCATCTCAATGATTTTG
CCTCATCTGGAATTCCGAGTCCGTTTACGGTGTCGTCTCCCATAACGCCG
CGTCGGGACACCAAGCTCCAAATTTCCTCGCTTGTTGCCACCGCTTCTGC
TACCCAAACGCTTGTGTGCAACTCTCTCCACACAATAACAACCTCGCACT
CCCATTCGGATCTTCGCTTGCACCACAACAAATCCAACTCTGCATTGTCG
GCGCTCACCTCCTTTGTACCGTCGCCCTCCACCACAACCCCAGAAACTCA
CATTGGCTCGCAATTAACCACTCCGAGCAAAACGGTGACAAACACACCCC
AAACAAACCATCAACGTGTCCTATCTCTTCACACACCCTCCCAGTCAACG
AGCCGTGCGAAATTGTCGCACACGCCTGTGCCTTTCTTCTTCTCTCCCGA
CAAGCCGCCGGAGCACATACTTTATACACAAGAGATAGAAACCGACTCAG
GTGGAACTTCCCCCCCCATTCCACTCTTGGATCGACCTGAGCTGCACTCG
GGAGACAACATCCTCAGGACATGTCAAAGGAAACCCATAGCGAAGAAGCC
GCCATCTCGCCATGTACCTACAAATGCATTAGCTGCTTTAGCTGCGGCAG
CGAGTAGCATACCGCTGTCCCCCCCTCGCCCTTAG
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protein sequence of Gchil5657.t1

>Gchil5657.t1 ID=Gchil5657.t1|Name=Gchil5657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=445bp
MTPHAIRPPSEQPPAVHSPPHPPLPRRRPAKPVGALPPKPASYGASSSST
RPTSSAPSPPAKPCGRRSPSWTPEEDTKLTTLVSKYISKPPSIIAPNTWS
RVAHHLPNRTGKQCRERYLNQLRPGIRRDPWTMHEERILHQFHARLGNKW
VAIARHLPGRTDNCVKNHWNSMLRKRQRRHAALKLTEKQVCHTLSRSNSS
PLSPHSSSARQNTTPSCPQSATPSEMSSHLNDFASSGIPSPFTVSSPITP
RRDTKLQISSLVATASATQTLVCNSLHTITTSHSHSDLRLHHNKSNSALS
ALTSFVPSPSTTTPETHIGSQLTTPSKTVTNTPQTNHQRVLSLHTPSQST
SRAKLSHTPVPFFFSPDKPPEHILYTQEIETDSGGTSPPIPLLDRPELHS
GDNILRTCQRKPIAKKPPSRHVPTNALAALAAAASSIPLSPPRP*
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mRNA from alignment at tig00000015_pilon:584315..585649-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5657.t1 ID=Gchil5657.t1|Name=Gchil5657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000015_pilon:584315..585649- (Gracilaria chilensis NLEC103_M9 male)
ATGACACCGCATGCCATCCGTCCCCCCTCCGAGCAGCCGCCCGCTGTTCA
CTCCCCGCCGCACCCGCCTCTCCCTCGCCGTCGCCCCGCAAAGCCGGTCG
GCGCCTTGCCGCCCAAGCCTGCGTCTTACGGCGCTTCGTCATCGTCCACT
CGCCCCACTTCGTCCGCCCCGTCACCGCCTGCCAAACCGTGTGGCAGAAG
AAGTCCAAGCTGGACGCCGGAAGAGGATACAAAACTCACAACCCTCGTCT
CCAAATATATCTCTAAACCGCCCTCTATCATTGCTCCTAACACCTGGAGT
CGAGTCGCTCATCATCTGCCGAACCGTACCGGAAAACAATGCCGCGAGAG
ATATCTCAATCAGCTCCGACCTGGCATTCGACGTGACCCGTGGACTATGC
ATGAAGAGCGCATCTTGCATCAATTCCATGCCCGCCTGGGCAACAAATGG
GTTGCAATTGCCAGGCACTTGCCCGGTCGAACCGATAACTGCGTCAAGAA
TCATTGGAATTCCATGCTTCGAAAGCGCCAGAGAAGGCACGCAGCCTTGA
AACTCACCGAGAAACAAGTGTGCCACACCCTCTCGCGCTCAAATTCCTCT
CCTTTGTCACCTCATTCTTCTTCCGCCCGCCAAAACACCACCCCCTCATG
CCCGCAAAGTGCGACACCCTCTGAAATGTCCTCCCATCTCAATGATTTTG
CCTCATCTGGAATTCCGAGTCCGTTTACGGTGTCGTCTCCCATAACGCCG
CGTCGGGACACCAAGCTCCAAATTTCCTCGCTTGTTGCCACCGCTTCTGC
TACCCAAACGCTTGTGTGCAACTCTCTCCACACAATAACAACCTCGCACT
CCCATTCGGATCTTCGCTTGCACCACAACAAATCCAACTCTGCATTGTCG
GCGCTCACCTCCTTTGTACCGTCGCCCTCCACCACAACCCCAGAAACTCA
CATTGGCTCGCAATTAACCACTCCGAGCAAAACGGTGACAAACACACCCC
AAACAAACCATCAACGTGTCCTATCTCTTCACACACCCTCCCAGTCAACG
AGCCGTGCGAAATTGTCGCACACGCCTGTGCCTTTCTTCTTCTCTCCCGA
CAAGCCGCCGGAGCACATACTTTATACACAAGAGATAGAAACCGACTCAG
GTGGAACTTCCCCCCCCATTCCACTCTTGGATCGACCTGAGCTGCACTCG
GGAGACAACATCCTCAGGACATGTCAAAGGAAACCCATAGCGAAGAAGCC
GCCATCTCGCCATGTACCTACAAATGCATTAGCTGCTTTAGCTGCGGCAG
CGAGTAGCATACCGCTGTCCCCCCCTCGCCCTTAG
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Coding sequence (CDS) from alignment at tig00000015_pilon:584315..585649-

>Gchil5657.t1 ID=Gchil5657.t1|Name=Gchil5657.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00000015_pilon:584315..585649- (Gracilaria chilensis NLEC103_M9 male)
ATGACACCGCATGCCATCCGTCCCCCCTCCGAGCAGCCGCCCGCTGTTCA
CTCCCCGCCGCACCCGCCTCTCCCTCGCCGTCGCCCCGCAAAGCCGGTCG
GCGCCTTGCCGCCCAAGCCTGCGTCTTACGGCGCTTCGTCATCGTCCACT
CGCCCCACTTCGTCCGCCCCGTCACCGCCTGCCAAACCGTGTGGCAGAAG
AAGTCCAAGCTGGACGCCGGAAGAGGATACAAAACTCACAACCCTCGTCT
CCAAATATATCTCTAAACCGCCCTCTATCATTGCTCCTAACACCTGGAGT
CGAGTCGCTCATCATCTGCCGAACCGTACCGGAAAACAATGCCGCGAGAG
ATATCTCAATCAGCTCCGACCTGGCATTCGACGTGACCCGTGGACTATGC
ATGAAGAGCGCATCTTGCATCAATTCCATGCCCGCCTGGGCAACAAATGG
GTTGCAATTGCCAGGCACTTGCCCGGTCGAACCGATAACTGCGTCAAGAA
TCATTGGAATTCCATGCTTCGAAAGCGCCAGAGAAGGCACGCAGCCTTGA
AACTCACCGAGAAACAAGTGTGCCACACCCTCTCGCGCTCAAATTCCTCT
CCTTTGTCACCTCATTCTTCTTCCGCCCGCCAAAACACCACCCCCTCATG
CCCGCAAAGTGCGACACCCTCTGAAATGTCCTCCCATCTCAATGATTTTG
CCTCATCTGGAATTCCGAGTCCGTTTACGGTGTCGTCTCCCATAACGCCG
CGTCGGGACACCAAGCTCCAAATTTCCTCGCTTGTTGCCACCGCTTCTGC
TACCCAAACGCTTGTGTGCAACTCTCTCCACACAATAACAACCTCGCACT
CCCATTCGGATCTTCGCTTGCACCACAACAAATCCAACTCTGCATTGTCG
GCGCTCACCTCCTTTGTACCGTCGCCCTCCACCACAACCCCAGAAACTCA
CATTGGCTCGCAATTAACCACTCCGAGCAAAACGGTGACAAACACACCCC
AAACAAACCATCAACGTGTCCTATCTCTTCACACACCCTCCCAGTCAACG
AGCCGTGCGAAATTGTCGCACACGCCTGTGCCTTTCTTCTTCTCTCCCGA
CAAGCCGCCGGAGCACATACTTTATACACAAGAGATAGAAACCGACTCAG
GTGGAACTTCCCCCCCCATTCCACTCTTGGATCGACCTGAGCTGCACTCG
GGAGACAACATCCTCAGGACATGTCAAAGGAAACCCATAGCGAAGAAGCC
GCCATCTCGCCATGTACCTACAAATGCATTAGCTGCTTTAGCTGCGGCAG
CGAGTAGCATACCGCTGTCCCCCCCTCGCCCTTAG
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