Gchil5651.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5651.t1
Unique Name	Gchil5651.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:509531..510970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	290512.Paes_0685
PFAMs	Epimerase
Max annot lvl	1090\|Chlorobi
KEGG ko	ko:K00091
Evalue	1.27e-16
EggNOG OGs	COG0451@1\|root,COG0451@2\|Bacteria,1FETZ@1090\|Chlorobi
EC	1.1.1.219
Description	PFAM NAD-dependent epimerase dehydratase
COG category	GM
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5651	Gchil5651	Gracilaria chilensis NLEC103_M9 male	gene	tig00000015_pilon 509531..510970 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5651.t1.start1	Gchil5651.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000015_pilon 509531..509533 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5651.t1.CDS1	Gchil5651.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000015_pilon 509531..510970 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5651.t1.exon1	Gchil5651.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000015_pilon 509531..510970 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5651.t1.stop1	Gchil5651.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000015_pilon 510968..510970 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5651.t1	Gchil5651.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000015_pilon 509531..510970 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000015_pilon:509531..510970+
coding sequence from alignment at tig00000015_pilon:509531..510970+

mRNA sequence

>Gchil5651.t1 ID=Gchil5651.t1|Name=Gchil5651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MASVGDDAAPRVLPEVPQMLFSPRALPPRAASLHAMRARRSYNLSTTTQL
GSSGGGEAPRLLPPRAATVHLSSQSSGTATQRFMRAAIAANAPLVAVTGG
LSFLGAHVVARMLTKGYFVRAIVPQGANVDFLVRLRGAHSRLQVVPVRDP
AAEDARSAMLLAFRGVSTVVHAVSFSTHGGTLPKNVASKRIVDALKIALD
AASAPGNVVINFIYMSSELCVFDAKQHSKRKTAHLTENDWFDCSKMGRES
SHSFAFAHTVAEMRLWARVGKGNLPFNVCSVIPSLVLGPVLSARQVAATP
SLNLFNAVANGWVTHVPDVPMSPVDARDVARAVTALTERPNIGGRLLLSA
ESLTSIELILRAQREFPYYRWPVLSARSAASVLRRRWARGRGHGREREGR
RGGDSDAAARRALREAEFAGKDRRGRRYEFSQTRARVELGLKFRAVDDTI
GDTLKSLERCDMLQRWHTVGAAHKVGKRL*

spliced messenger RNA

>Gchil5651.t1 ID=Gchil5651.t1|Name=Gchil5651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000015_pilon:509531..510970+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCGTGGGCGACGACGCCGCGCCGCGCGTGCTTCCCGAAGTGCC
TCAAATGCTGTTCTCTCCGCGAGCGCTGCCGCCGCGCGCGGCCAGTCTGC
ACGCAATGCGCGCACGCCGCTCGTACAATCTGTCGACGACGACGCAGCTC
GGCAGCTCGGGCGGCGGCGAGGCGCCGCGGCTCTTGCCGCCGCGCGCTGC
CACCGTGCACTTGTCGTCTCAGAGCAGTGGGACCGCGACGCAGCGTTTCA
TGCGCGCGGCCATTGCGGCCAACGCGCCGCTGGTGGCCGTCACGGGCGGA
TTGAGCTTTCTGGGCGCGCACGTCGTGGCCAGAATGCTCACCAAGGGCTA
CTTTGTGCGCGCCATTGTGCCGCAGGGCGCTAACGTGGACTTTCTGGTGC
GTTTGAGAGGGGCGCACAGTCGGTTGCAGGTGGTGCCGGTGCGCGACCCG
GCGGCGGAGGATGCGCGCTCGGCCATGCTACTGGCGTTTCGCGGCGTGAG
CACGGTGGTTCATGCGGTGTCGTTCTCCACGCACGGCGGCACGTTGCCCA
AGAACGTTGCGTCCAAGCGCATCGTGGACGCGCTCAAGATTGCGTTGGAC
GCGGCGTCGGCGCCGGGCAACGTGGTCATCAACTTTATCTACATGTCGTC
GGAGCTGTGTGTGTTTGACGCCAAGCAGCACTCCAAGCGCAAGACGGCGC
ATCTCACGGAGAATGATTGGTTTGACTGCTCCAAGATGGGGCGGGAGAGC
AGCCATTCGTTTGCGTTTGCGCACACGGTGGCCGAGATGCGGCTGTGGGC
GCGAGTGGGCAAGGGCAACCTGCCATTCAACGTGTGCTCGGTGATTCCGT
CGTTGGTGTTGGGGCCGGTGCTGTCAGCGCGGCAGGTGGCAGCCACGCCG
TCGCTAAACTTGTTCAACGCGGTGGCCAACGGATGGGTGACGCACGTCCC
GGACGTGCCCATGTCGCCAGTGGACGCGCGCGACGTAGCGCGCGCTGTGA
CGGCGCTGACAGAGCGGCCCAATATCGGCGGGCGACTTCTGCTCAGCGCC
GAATCACTGACGTCTATCGAACTGATTCTTCGGGCGCAGCGCGAGTTTCC
CTACTACCGATGGCCCGTGCTGAgcgcacgcagcgcggcaagcgtgttgc
gacgacggtgggctcgcggacgcggacacggacgcgaacgcgaaggcagg
cgcgggggcgacagcgatgcggcggcgcgacgggcgctgcgcgaggcgga
GTTTGCTGGCAAGGATCGGCGCGGGAGACGGTACGAGTTTTCGCAGACGC
GGGCGCGCGTGGAGCTGGGGCTCAAGTTTCGGGCGGTGGATGACACGATA
GGGGATACGCTGAAGAGCCTGGAGCGATGCGACATGCTGCAGCGGTGGCA
TACAGTGGGTGCGGCGCACAAGGTGGGGAAGAGGTTGTAG

protein sequence of Gchil5651.t1

>Gchil5651.t1 ID=Gchil5651.t1|Name=Gchil5651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MASVGDDAAPRVLPEVPQMLFSPRALPPRAASLHAMRARRSYNLSTTTQL
GSSGGGEAPRLLPPRAATVHLSSQSSGTATQRFMRAAIAANAPLVAVTGG
LSFLGAHVVARMLTKGYFVRAIVPQGANVDFLVRLRGAHSRLQVVPVRDP
AAEDARSAMLLAFRGVSTVVHAVSFSTHGGTLPKNVASKRIVDALKIALD
AASAPGNVVINFIYMSSELCVFDAKQHSKRKTAHLTENDWFDCSKMGRES
SHSFAFAHTVAEMRLWARVGKGNLPFNVCSVIPSLVLGPVLSARQVAATP
SLNLFNAVANGWVTHVPDVPMSPVDARDVARAVTALTERPNIGGRLLLSA
ESLTSIELILRAQREFPYYRWPVLSARSAASVLRRRWARGRGHGREREGR
RGGDSDAAARRALREAEFAGKDRRGRRYEFSQTRARVELGLKFRAVDDTI
GDTLKSLERCDMLQRWHTVGAAHKVGKRL*

mRNA from alignment at tig00000015_pilon:509531..510970+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5651.t1 ID=Gchil5651.t1|Name=Gchil5651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000015_pilon:509531..510970+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGCGTGGGCGACGACGCCGCGCCGCGCGTGCTTCCCGAAGTGCC
TCAAATGCTGTTCTCTCCGCGAGCGCTGCCGCCGCGCGCGGCCAGTCTGC
ACGCAATGCGCGCACGCCGCTCGTACAATCTGTCGACGACGACGCAGCTC
GGCAGCTCGGGCGGCGGCGAGGCGCCGCGGCTCTTGCCGCCGCGCGCTGC
CACCGTGCACTTGTCGTCTCAGAGCAGTGGGACCGCGACGCAGCGTTTCA
TGCGCGCGGCCATTGCGGCCAACGCGCCGCTGGTGGCCGTCACGGGCGGA
TTGAGCTTTCTGGGCGCGCACGTCGTGGCCAGAATGCTCACCAAGGGCTA
CTTTGTGCGCGCCATTGTGCCGCAGGGCGCTAACGTGGACTTTCTGGTGC
GTTTGAGAGGGGCGCACAGTCGGTTGCAGGTGGTGCCGGTGCGCGACCCG
GCGGCGGAGGATGCGCGCTCGGCCATGCTACTGGCGTTTCGCGGCGTGAG
CACGGTGGTTCATGCGGTGTCGTTCTCCACGCACGGCGGCACGTTGCCCA
AGAACGTTGCGTCCAAGCGCATCGTGGACGCGCTCAAGATTGCGTTGGAC
GCGGCGTCGGCGCCGGGCAACGTGGTCATCAACTTTATCTACATGTCGTC
GGAGCTGTGTGTGTTTGACGCCAAGCAGCACTCCAAGCGCAAGACGGCGC
ATCTCACGGAGAATGATTGGTTTGACTGCTCCAAGATGGGGCGGGAGAGC
AGCCATTCGTTTGCGTTTGCGCACACGGTGGCCGAGATGCGGCTGTGGGC
GCGAGTGGGCAAGGGCAACCTGCCATTCAACGTGTGCTCGGTGATTCCGT
CGTTGGTGTTGGGGCCGGTGCTGTCAGCGCGGCAGGTGGCAGCCACGCCG
TCGCTAAACTTGTTCAACGCGGTGGCCAACGGATGGGTGACGCACGTCCC
GGACGTGCCCATGTCGCCAGTGGACGCGCGCGACGTAGCGCGCGCTGTGA
CGGCGCTGACAGAGCGGCCCAATATCGGCGGGCGACTTCTGCTCAGCGCC
GAATCACTGACGTCTATCGAACTGATTCTTCGGGCGCAGCGCGAGTTTCC
CTACTACCGATGGCCCGTGCTGAgcgcacgcagcgcggcaagcgtgttgc
gacgacggtgggctcgcggacgcggacacggacgcgaacgcgaaggcagg
cgcgggggcgacagcgatgcggcggcgcgacgggcgctgcgcgaggcgga
GTTTGCTGGCAAGGATCGGCGCGGGAGACGGTACGAGTTTTCGCAGACGC
GGGCGCGCGTGGAGCTGGGGCTCAAGTTTCGGGCGGTGGATGACACGATA
GGGGATACGCTGAAGAGCCTGGAGCGATGCGACATGCTGCAGCGGTGGCA
TACAGTGGGTGCGGCGCACAAGGTGGGGAAGAGGTTGTAG

Coding sequence (CDS) from alignment at tig00000015_pilon:509531..510970+

>Gchil5651.t1 ID=Gchil5651.t1|Name=Gchil5651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000015_pilon:509531..510970+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAGCGTGGGCGACGACGCCGCGCCGCGCGTGCTTCCCGAAGTGCC
TCAAATGCTGTTCTCTCCGCGAGCGCTGCCGCCGCGCGCGGCCAGTCTGC
ACGCAATGCGCGCACGCCGCTCGTACAATCTGTCGACGACGACGCAGCTC
GGCAGCTCGGGCGGCGGCGAGGCGCCGCGGCTCTTGCCGCCGCGCGCTGC
CACCGTGCACTTGTCGTCTCAGAGCAGTGGGACCGCGACGCAGCGTTTCA
TGCGCGCGGCCATTGCGGCCAACGCGCCGCTGGTGGCCGTCACGGGCGGA
TTGAGCTTTCTGGGCGCGCACGTCGTGGCCAGAATGCTCACCAAGGGCTA
CTTTGTGCGCGCCATTGTGCCGCAGGGCGCTAACGTGGACTTTCTGGTGC
GTTTGAGAGGGGCGCACAGTCGGTTGCAGGTGGTGCCGGTGCGCGACCCG
GCGGCGGAGGATGCGCGCTCGGCCATGCTACTGGCGTTTCGCGGCGTGAG
CACGGTGGTTCATGCGGTGTCGTTCTCCACGCACGGCGGCACGTTGCCCA
AGAACGTTGCGTCCAAGCGCATCGTGGACGCGCTCAAGATTGCGTTGGAC
GCGGCGTCGGCGCCGGGCAACGTGGTCATCAACTTTATCTACATGTCGTC
GGAGCTGTGTGTGTTTGACGCCAAGCAGCACTCCAAGCGCAAGACGGCGC
ATCTCACGGAGAATGATTGGTTTGACTGCTCCAAGATGGGGCGGGAGAGC
AGCCATTCGTTTGCGTTTGCGCACACGGTGGCCGAGATGCGGCTGTGGGC
GCGAGTGGGCAAGGGCAACCTGCCATTCAACGTGTGCTCGGTGATTCCGT
CGTTGGTGTTGGGGCCGGTGCTGTCAGCGCGGCAGGTGGCAGCCACGCCG
TCGCTAAACTTGTTCAACGCGGTGGCCAACGGATGGGTGACGCACGTCCC
GGACGTGCCCATGTCGCCAGTGGACGCGCGCGACGTAGCGCGCGCTGTGA
CGGCGCTGACAGAGCGGCCCAATATCGGCGGGCGACTTCTGCTCAGCGCC
GAATCACTGACGTCTATCGAACTGATTCTTCGGGCGCAGCGCGAGTTTCC
CTACTACCGATGGCCCGTGCTGAgcgcacgcagcgcggcaagcgtgttgc
gacgacggtgggctcgcggacgcggacacggacgcgaacgcgaaggcagg
cgcgggggcgacagcgatgcggcggcgcgacgggcgctgcgcgaggcgga
GTTTGCTGGCAAGGATCGGCGCGGGAGACGGTACGAGTTTTCGCAGACGC
GGGCGCGCGTGGAGCTGGGGCTCAAGTTTCGGGCGGTGGATGACACGATA
GGGGATACGCTGAAGAGCCTGGAGCGATGCGACATGCTGCAGCGGTGGCA
TACAGTGGGTGCGGCGCACAAGGTGGGGAAGAGGTTGTAG