Gchil5646.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5646.t1
Unique NameGchil5646.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:419126..419440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5646Gchil5646Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 419126..419440 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5646.t1.start1Gchil5646.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 419126..419128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5646.t1.CDS1Gchil5646.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 419126..419440 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5646.t1.exon1Gchil5646.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 419126..419440 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5646.t1.stop1Gchil5646.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 419438..419440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5646.t1Gchil5646.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 419126..419440 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5646.t1 ID=Gchil5646.t1|Name=Gchil5646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=105bp
MDKTNLKHKLRQHAAKLLDPEHSPDPHPPTSSSASAPASASASASTSTPA
SAPAAAEPPHVHTSTHNPKRVFADKVKHKMDDPELQQRAGQLFMHHAKKK
IFKE*
back to top

spliced messenger RNA

>Gchil5646.t1 ID=Gchil5646.t1|Name=Gchil5646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00000015_pilon:419126..419440+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAAGACTAACCTCAAACACAAGCTGCGTCAGCACGCCGCAAAGCT
GCTCGATCCCGAGCACTCGCCCGACCCCCATCCCCCCActtcttcttctg
cttctgctcctgcttctgcttctgcttctgcttctacttctACTCCCGCT
TCGGCTCCCGCCGCGGCCGAGCCGCCGCACGTCCACACCTCCACCCACAA
CCCCAAGCGCGTGTTCGCCGACAAGGTCAAGCACAAGATGGATGACCCCG
AGCTACAACAGCGCGCCGGCCAACTCTTCATGCACCACGCCAAGAAGAAG
ATCTTCAAGGAATAG
back to top

protein sequence of Gchil5646.t1

>Gchil5646.t1 ID=Gchil5646.t1|Name=Gchil5646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=105bp
MDKTNLKHKLRQHAAKLLDPEHSPDPHPPTSSSASAPASASASASTSTPA
SAPAAAEPPHVHTSTHNPKRVFADKVKHKMDDPELQQRAGQLFMHHAKKK
IFKE*
back to top

mRNA from alignment at tig00000015_pilon:419126..419440+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5646.t1 ID=Gchil5646.t1|Name=Gchil5646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00000015_pilon:419126..419440+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATAAGACTAACCTCAAACACAAGCTGCGTCAGCACGCCGCAAAGCT
GCTCGATCCCGAGCACTCGCCCGACCCCCATCCCCCCActtcttcttctg
cttctgctcctgcttctgcttctgcttctgcttctacttctACTCCCGCT
TCGGCTCCCGCCGCGGCCGAGCCGCCGCACGTCCACACCTCCACCCACAA
CCCCAAGCGCGTGTTCGCCGACAAGGTCAAGCACAAGATGGATGACCCCG
AGCTACAACAGCGCGCCGGCCAACTCTTCATGCACCACGCCAAGAAGAAG
ATCTTCAAGGAATAG
back to top

Coding sequence (CDS) from alignment at tig00000015_pilon:419126..419440+

>Gchil5646.t1 ID=Gchil5646.t1|Name=Gchil5646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=315bp|location=Sequence derived from alignment at tig00000015_pilon:419126..419440+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATAAGACTAACCTCAAACACAAGCTGCGTCAGCACGCCGCAAAGCT
GCTCGATCCCGAGCACTCGCCCGACCCCCATCCCCCCActtcttcttctg
cttctgctcctgcttctgcttctgcttctgcttctacttctACTCCCGCT
TCGGCTCCCGCCGCGGCCGAGCCGCCGCACGTCCACACCTCCACCCACAA
CCCCAAGCGCGTGTTCGCCGACAAGGTCAAGCACAAGATGGATGACCCCG
AGCTACAACAGCGCGCCGGCCAACTCTTCATGCACCACGCCAAGAAGAAG
ATCTTCAAGGAATAG
back to top