Gchil5643.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5643.t1
Unique Name	Gchil5643.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	493

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:351711..353189 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN301CT
Preferred name	kes1
PFAMs	Oxysterol_BP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05012,ko:K20465
KEGG TC	2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
GOs	GO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005933,GO:0005935,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006892,GO:0006897,GO:0006914,GO:0007163,GO:0008142,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009893,GO:0009987,GO:0010562,GO:0010876,GO:0010921,GO:0010922,GO:0012505,GO:0015248,GO:0015850,GO:0015918,GO:0016020,GO:0016043,GO:0016192,GO:0016237,GO:0019220,GO:0019222,GO:0019898,GO:0030011,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031984,GO:0032365,GO:0032934,GO:0032940,GO:0033036,GO:0034727,GO:0035091,GO:0035303,GO:0035306,GO:0035621,GO:0035627,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045937,GO:0046903,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0065007,GO:0065009,GO:0070273,GO:0070300,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0120009,GO:0120011,GO:1901564,GO:1901981,GO:1902936
Evalue	1.67e-50
EggNOG OGs	KOG2210@1\|root,KOG2210@2759\|Eukaryota
Description	lipid transport
COG category	P
BRITE	ko00000,ko04040,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5643	Gchil5643	Gracilaria chilensis NLEC103_M9 male	gene	tig00000015_pilon 351711..353189 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5643.t1.stop1	Gchil5643.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000015_pilon 351711..351713 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5643.t1.CDS1	Gchil5643.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000015_pilon 351711..353189 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5643.t1.exon1	Gchil5643.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000015_pilon 351711..353189 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5643.t1.start1	Gchil5643.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000015_pilon 353187..353189 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5643.t1	Gchil5643.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000015_pilon 351711..353189 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000015_pilon:351711..353189-
coding sequence from alignment at tig00000015_pilon:351711..353189-

mRNA sequence

>Gchil5643.t1 ID=Gchil5643.t1|Name=Gchil5643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=493bp
MSSSATSEFKQLSKSDDYRIENASASGGMLFKDPKEGEIIRRSVQYVLQR
VGSQVLQGNITFSGMSMPVHMNEPRSLLERVTDDWAYAPLYLNAAAATTD
PVQRIKLVAAFVVSGLHCIETLAKPFNPILGSTYQATLSDGTPCYIEQTS
HHPPVTHYTIRPNDNKYLLAGFSGVQGGVVWGLDTAISSRRVGVNVVEFA
DGTRIVYTFPTMLLRALLSELKCEFSGPFSIMYEQHGLVFDFVVNPPQPI
RWSPFSVGTPSDYLDGVLYRVSSVKKEQGAVTFTGAFSKQDGSFFGDPDK
AQQEAVDGGYSAIELRSDAEVTQSVTRATRARNDVASRTQILSTSEGEVE
REILSIARGTFVGYLDIDGKRWWDIRETPKGTVSAGNMLQALASDCRNRE
DVLVLKRAVDESNDAESRDAITKEAQTLKEKIENIQRRDLKLRKEGVLKE
NEEEGEVDEEQEKMVQGKVDFDTKNEEGKVAKEFMPISLGKT*

spliced messenger RNA

>Gchil5643.t1 ID=Gchil5643.t1|Name=Gchil5643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000015_pilon:351711..353189- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGTTCCGCTACCTCGGAATTCAAACAGCTGTCAAAATCCGATGA
TTATCGCATCGAAAACGCCTCTGCCTCCGGCGGAATGCTTTTCAAAGATC
CAAAGGAAGGAGAAATTATTCGTAGAAGCGTGCAGTATGTGCTGCAACGC
GTTGGATCACAAGTATTACAAGGGAACATCACTTTTTCTGGAATGTCGAT
GCCGGTTCACATGAATGAACCAAGAAGTCTACTTGAGCGTGTCACAGATG
ATTGGGCATATGCTCCGTTATATTTAAACGCTGCTGCTGCAACCACAGAC
CCTGTGCAGCGGATCAAACTCGTTGCAGCGTTTGTTGTGTCTGGCTTGCA
TTGCATCGAGACTCTAGCAAAGCCATTCAACCCTATTCTTGGCAGTACGT
ATCAGGCAACGCTCAGTGACGGAACTCCATGCTACATTGAACAAACCAGT
CATCACCCACCAGTTACACATTACACAATTCGTCCCAACGACAACAAATA
TCTTTTAGCAGGCTTTAGTGGCGTACAAGGGGGAGTGGTGTGGGGGTTAG
ATACAGCGATTTCATCCCGAAGGGTTGGTGTTAATGTGGTTGAGTTTGCA
GACGGCACTCGAATCGTATATACATTTCCAACAATGCTATTGCGCGCACT
TTTGAGCGAACTCAAGTGCGAGTTCTCTGGACCGTTCTCAATCATGTACG
AACAACACGGGCTTGTTTTTGATTTTGTGGTGAATCCACCACAACCAATA
CGATGGTCTCCATTCAGTGTAGGCACGCCGTCAGACTACCTGGATGGTGT
TCTTTACCGTGTTTCGAGCGTGAAAAAGGAACAGGGTGCCGTAACTTTCA
CTGGAGCCTTTTCCAAACAAGATGGTTCGTTCTTTGGTGACCCTGACAAG
GCGCAACAAGAGGCTGTGGACGGGGGTTATTCAGCGATAGAACTTCGAAG
CGATGCAGAAGTGACGCAGTCTGTAACACGTGCGACTCGGGCTCGAAACG
ATGTCGCGTCAAGAACCCAAATTTTAAGCACGAGCGAGGGAGAGGTAGAA
CGAGAAATTTTGTCAATTGCACGCGGCACTTTTGTGGGGTATCTGGATAT
TGATGGAAAACGTTGGTGGGATATTCGTGAAACACCAAAAGGAACGGTGA
GTGCCGGAAATATGTTACAAGCGCTTGCGAGTGATTGTAGAAACCGAGAA
GACGTGCTTGTTTTGAAGCGCGCGGTTGATGAAAGTAATGACGCGGAAAG
CAGAGATGCGATCACAAAGGAGGCGCAGACGCTTAAAGAGAAGATAGAAA
ATATTCAGCGACGAGACCTAAAACTAAGGAAGGAAGGCGTATTGAAGGAA
AATGAGGAGGAGGGGGAAGTAGATGAGGAACAAGAAAAGATGGTGCAGGG
GAAGGTTGATTTTGATACTAAAAATGAAGAAGGTAAAGTAGCGAAAGAGT
TCATGCCGATCTCACTTGGGAAGACTTGA

protein sequence of Gchil5643.t1

>Gchil5643.t1 ID=Gchil5643.t1|Name=Gchil5643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=493bp
MSSSATSEFKQLSKSDDYRIENASASGGMLFKDPKEGEIIRRSVQYVLQR
VGSQVLQGNITFSGMSMPVHMNEPRSLLERVTDDWAYAPLYLNAAAATTD
PVQRIKLVAAFVVSGLHCIETLAKPFNPILGSTYQATLSDGTPCYIEQTS
HHPPVTHYTIRPNDNKYLLAGFSGVQGGVVWGLDTAISSRRVGVNVVEFA
DGTRIVYTFPTMLLRALLSELKCEFSGPFSIMYEQHGLVFDFVVNPPQPI
RWSPFSVGTPSDYLDGVLYRVSSVKKEQGAVTFTGAFSKQDGSFFGDPDK
AQQEAVDGGYSAIELRSDAEVTQSVTRATRARNDVASRTQILSTSEGEVE
REILSIARGTFVGYLDIDGKRWWDIRETPKGTVSAGNMLQALASDCRNRE
DVLVLKRAVDESNDAESRDAITKEAQTLKEKIENIQRRDLKLRKEGVLKE
NEEEGEVDEEQEKMVQGKVDFDTKNEEGKVAKEFMPISLGKT*

mRNA from alignment at tig00000015_pilon:351711..353189-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5643.t1 ID=Gchil5643.t1|Name=Gchil5643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000015_pilon:351711..353189- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAGTTCCGCTACCTCGGAATTCAAACAGCTGTCAAAATCCGATGA
TTATCGCATCGAAAACGCCTCTGCCTCCGGCGGAATGCTTTTCAAAGATC
CAAAGGAAGGAGAAATTATTCGTAGAAGCGTGCAGTATGTGCTGCAACGC
GTTGGATCACAAGTATTACAAGGGAACATCACTTTTTCTGGAATGTCGAT
GCCGGTTCACATGAATGAACCAAGAAGTCTACTTGAGCGTGTCACAGATG
ATTGGGCATATGCTCCGTTATATTTAAACGCTGCTGCTGCAACCACAGAC
CCTGTGCAGCGGATCAAACTCGTTGCAGCGTTTGTTGTGTCTGGCTTGCA
TTGCATCGAGACTCTAGCAAAGCCATTCAACCCTATTCTTGGCAGTACGT
ATCAGGCAACGCTCAGTGACGGAACTCCATGCTACATTGAACAAACCAGT
CATCACCCACCAGTTACACATTACACAATTCGTCCCAACGACAACAAATA
TCTTTTAGCAGGCTTTAGTGGCGTACAAGGGGGAGTGGTGTGGGGGTTAG
ATACAGCGATTTCATCCCGAAGGGTTGGTGTTAATGTGGTTGAGTTTGCA
GACGGCACTCGAATCGTATATACATTTCCAACAATGCTATTGCGCGCACT
TTTGAGCGAACTCAAGTGCGAGTTCTCTGGACCGTTCTCAATCATGTACG
AACAACACGGGCTTGTTTTTGATTTTGTGGTGAATCCACCACAACCAATA
CGATGGTCTCCATTCAGTGTAGGCACGCCGTCAGACTACCTGGATGGTGT
TCTTTACCGTGTTTCGAGCGTGAAAAAGGAACAGGGTGCCGTAACTTTCA
CTGGAGCCTTTTCCAAACAAGATGGTTCGTTCTTTGGTGACCCTGACAAG
GCGCAACAAGAGGCTGTGGACGGGGGTTATTCAGCGATAGAACTTCGAAG
CGATGCAGAAGTGACGCAGTCTGTAACACGTGCGACTCGGGCTCGAAACG
ATGTCGCGTCAAGAACCCAAATTTTAAGCACGAGCGAGGGAGAGGTAGAA
CGAGAAATTTTGTCAATTGCACGCGGCACTTTTGTGGGGTATCTGGATAT
TGATGGAAAACGTTGGTGGGATATTCGTGAAACACCAAAAGGAACGGTGA
GTGCCGGAAATATGTTACAAGCGCTTGCGAGTGATTGTAGAAACCGAGAA
GACGTGCTTGTTTTGAAGCGCGCGGTTGATGAAAGTAATGACGCGGAAAG
CAGAGATGCGATCACAAAGGAGGCGCAGACGCTTAAAGAGAAGATAGAAA
ATATTCAGCGACGAGACCTAAAACTAAGGAAGGAAGGCGTATTGAAGGAA
AATGAGGAGGAGGGGGAAGTAGATGAGGAACAAGAAAAGATGGTGCAGGG
GAAGGTTGATTTTGATACTAAAAATGAAGAAGGTAAAGTAGCGAAAGAGT
TCATGCCGATCTCACTTGGGAAGACTTGA

Coding sequence (CDS) from alignment at tig00000015_pilon:351711..353189-

>Gchil5643.t1 ID=Gchil5643.t1|Name=Gchil5643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000015_pilon:351711..353189- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAAGTTCCGCTACCTCGGAATTCAAACAGCTGTCAAAATCCGATGA
TTATCGCATCGAAAACGCCTCTGCCTCCGGCGGAATGCTTTTCAAAGATC
CAAAGGAAGGAGAAATTATTCGTAGAAGCGTGCAGTATGTGCTGCAACGC
GTTGGATCACAAGTATTACAAGGGAACATCACTTTTTCTGGAATGTCGAT
GCCGGTTCACATGAATGAACCAAGAAGTCTACTTGAGCGTGTCACAGATG
ATTGGGCATATGCTCCGTTATATTTAAACGCTGCTGCTGCAACCACAGAC
CCTGTGCAGCGGATCAAACTCGTTGCAGCGTTTGTTGTGTCTGGCTTGCA
TTGCATCGAGACTCTAGCAAAGCCATTCAACCCTATTCTTGGCAGTACGT
ATCAGGCAACGCTCAGTGACGGAACTCCATGCTACATTGAACAAACCAGT
CATCACCCACCAGTTACACATTACACAATTCGTCCCAACGACAACAAATA
TCTTTTAGCAGGCTTTAGTGGCGTACAAGGGGGAGTGGTGTGGGGGTTAG
ATACAGCGATTTCATCCCGAAGGGTTGGTGTTAATGTGGTTGAGTTTGCA
GACGGCACTCGAATCGTATATACATTTCCAACAATGCTATTGCGCGCACT
TTTGAGCGAACTCAAGTGCGAGTTCTCTGGACCGTTCTCAATCATGTACG
AACAACACGGGCTTGTTTTTGATTTTGTGGTGAATCCACCACAACCAATA
CGATGGTCTCCATTCAGTGTAGGCACGCCGTCAGACTACCTGGATGGTGT
TCTTTACCGTGTTTCGAGCGTGAAAAAGGAACAGGGTGCCGTAACTTTCA
CTGGAGCCTTTTCCAAACAAGATGGTTCGTTCTTTGGTGACCCTGACAAG
GCGCAACAAGAGGCTGTGGACGGGGGTTATTCAGCGATAGAACTTCGAAG
CGATGCAGAAGTGACGCAGTCTGTAACACGTGCGACTCGGGCTCGAAACG
ATGTCGCGTCAAGAACCCAAATTTTAAGCACGAGCGAGGGAGAGGTAGAA
CGAGAAATTTTGTCAATTGCACGCGGCACTTTTGTGGGGTATCTGGATAT
TGATGGAAAACGTTGGTGGGATATTCGTGAAACACCAAAAGGAACGGTGA
GTGCCGGAAATATGTTACAAGCGCTTGCGAGTGATTGTAGAAACCGAGAA
GACGTGCTTGTTTTGAAGCGCGCGGTTGATGAAAGTAATGACGCGGAAAG
CAGAGATGCGATCACAAAGGAGGCGCAGACGCTTAAAGAGAAGATAGAAA
ATATTCAGCGACGAGACCTAAAACTAAGGAAGGAAGGCGTATTGAAGGAA
AATGAGGAGGAGGGGGAAGTAGATGAGGAACAAGAAAAGATGGTGCAGGG
GAAGGTTGATTTTGATACTAAAAATGAAGAAGGTAAAGTAGCGAAAGAGT
TCATGCCGATCTCACTTGGGAAGACTTGA