Gchil5635.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5635.t1
Unique Name	Gchil5635.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	733

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:270932..273130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1110502.TMO_3542
Preferred name	infB
PFAMs	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
Max annot lvl	204441\|Rhodospirillales
KEGG ko	ko:K02519
Evalue	1.48e-112
EggNOG OGs	COG0532@1\|root,COG0532@2\|Bacteria,1MV26@1224\|Proteobacteria,2TQMY@28211\|Alphaproteobacteria,2JQK4@204441\|Rhodospirillales
Description	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5635	Gchil5635	Gracilaria chilensis NLEC103_M9 male	gene	tig00000015_pilon 270932..273130 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5635.t1.stop1	Gchil5635.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000015_pilon 270932..270934 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5635.t1.CDS1	Gchil5635.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000015_pilon 270932..273130 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5635.t1.exon1	Gchil5635.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000015_pilon 270932..273130 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5635.t1.start1	Gchil5635.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000015_pilon 273128..273130 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5635.t1	Gchil5635.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000015_pilon 270932..273130 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000015_pilon:270932..273130-
coding sequence from alignment at tig00000015_pilon:270932..273130-

mRNA sequence

>Gchil5635.t1 ID=Gchil5635.t1|Name=Gchil5635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=733bp
MAQISRIGILNFIARAWTNSQVLIPGGCLRANNFGKREWSRSMAMAATRE
ANEGSDRRARGDTKSRKQARPPRQRDPTWRKQQYAGRRPSPSKRRPQVLP
IREVVLPDIGLSSQQLAALAECLEEDVFKVAKDLDDAVFTPRSVLAPALV
ELVTEELHLRLSLKPQTERLVAPEETAIVSSGEIDWRAPIITVMGHVDHG
KTSLLDALRHSDVAKREAGGITQSVAAFQVPLSKEDGSSKKTFATFIDTP
GHAAFKAMRASGAVVTDIVVLVVAADDGVMPQTVEAANLARQANVPIIVA
INKCDMPGADPERVRYQLLDRLGLNTEQLGGDIQCVDISAKTGANLPQLL
DAILLQADMSDLRASPHAPGAGICLESRLDRSLGSVATVVVRSGTLRVGN
HVVFQSPKMLRGDLFGRIRSIIASDSTSLKEAVPGMTVGIVGIKTNIPPG
AEVRAVASEKIAKSKSREMILRNLAAASTIELANSLLLKREAEMTTRVES
ESPTQVLEEEGQIADEGVKRTLLVLVKGDVQGSADAVAQCIQSLETAHLD
VRILSVGVGEINDMDLKIISASKHVKESAEEPIIVAFNVKAKDSAVKTAK
RYAIPILSHSLIYHLEDDVKDQIHKLLSAFQTVVEITGTASVVRVFEDGS
IAGCSMDDGSLAHNDNVRVMRLPSIYSEQRMRSEVFTGPVASIKRFAKTV
RSVEKGSECGVSLKGWSSFEEGDIIEVITEKA*

spliced messenger RNA

>Gchil5635.t1 ID=Gchil5635.t1|Name=Gchil5635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at tig00000015_pilon:270932..273130- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAAATATCTCGGATAGGGATATTGAATTTCATTGCTCGGGCGTG
GACCAATTCACAAGTTCTCATCCCAGGTGGATGCCTGCGGGCCAACAATT
TTGGAAAGCGAGAGTGGTCAAGAAGTATGGCGATGGCCGCCACGAGGGAG
GCGAATGAAGGATCGGATAGACGAGCTAGAGGTGATACGAAATCGAGGAA
ACAAGCACGACCTCCTCGTCAGCGCGATCCTACTTGGAGAAAACAACAGT
ATGCAGGGAGGAGACCATCACCGTCCAAACGAAGACCACAAGTTCTTCCT
ATTCGCGAAGTCGTGCTTCCCGACATAGGGCTTTCATCACAGCAGCTAGC
CGCATTAGCTGAATGTTTGGAAGAAGATGTTTTCAAAGTGGCAAAGGATT
TGGATGATGCCGTATTCACGCCAAGATCTGTGCTCGCTCCGGCGCTTGTA
GAGCTAGTTACGGAGGAACTACATCTAAGATTGTCGTTAAAACCACAGAC
CGAACGCTTGGTTGCTCCGGAAGAAACAGCGATTGTGAGCAGTGGTGAGA
TCGACTGGAGAGCACCAATCATAACTGTTATGGGTCACGTTGATCATGGA
AAAACCTCTCTTCTTGATGCTCTGAGACATAGCGACGTTGCGAAACGGGA
AGCTGGAGGCATCACCCAAAGTGTCGCCGCTTTTCAGGTACCACTATCGA
AAGAAGATGGTAGTTCGAAGAAGACGTTTGCCACCTTCATTGACACACCC
GGACACGCAGCTTTTAAAGCAATGCGTGCAAGCGGAGCAGTAGTGACGGA
CATTGTCGTACTAGTTGTTGCGGCAGACGACGGTGTCATGCCTCAAACCG
TAGAGGCTGCAAATTTAGCTCGCCAAGCGAATGTTCCAATCATCGTCGCT
ATCAACAAATGCGATATGCCTGGCGCAGACCCAGAGCGTGTTAGATATCA
ACTTTTAGACCGACTTGGGCTCAACACTGAACAACTCGGTGGCGACATAC
AGTGCGTGGACATCTCCGCAAAGACAGGAGCAAACCTGCCGCAATTGCTC
GACGCTATCTTATTACAAGCCGACATGTCAGATCTCCGCGCGAGTCCACA
TGCACCCGGCGCCGGAATATGCTTAGAGTCACGTCTAGACCGCTCACTGG
GCTCAGTAGCAACAGTTGTGGTGCGTAGTGGGACGTTGCGCGTTGGCAAC
CATGTTGTTTTCCAATCGCCCAAAATGCTTCGGGGAGATTTGTTCGGTCG
TATTCGCAGCATCATCGCGAGCGATTCCACATCTCTTAAGGAGGCAGTGC
CTGGTATGACCGTCGGTATCGTCGGCATAAAGACAAATATTCCTCCGGGG
GCCGAAGTAAGGGCTGTGGCTAGTGAGAAGATTGCGAAATCAAAGTCGCG
TGAAATGATTCTCAGAAATCTGGCGGCTGCTTCAACGATAGAGCTGGCCA
ATTCGCTACTGCTGAAACGTGAGGCAGAGATGACCACGAGAGTGGAAAGT
GAATCGCCGACACAAGTTCTAGAAGAAGAGGGGCAAATTGCAGATGAAGG
TGTGAAACGGACACTTCTCGTGCTTGTAAAGGGCGATGTACAGGGTAGTG
CGGACGCCGTAGCACAATGCATCCAATCGTTAGAAACAGCTCATCTGGAC
GTTCGCATTCTTAGCGTCGGTGTCGGAGAGATCAATGATATGGATCTCAA
AATCATATCGGCCAGCAAGCATGTGAAGGAAAGCGCAGAAGAGCCAATAA
TCGTAGCGTTTAATGTGAAAGCCAAAGACTCTGCTGTGAAAACAGCGAAA
CGATACGCGATCCCAATATTGTCTCATTCGTTGATTTACCACCTTGAAGA
TGACGTCAAGGATCAAATTCACAAACTTTTGTCCGCATTCCAAACTGTGG
TCGAAATCACGGGAACTGCTTCCGTGGTACGTGTGTTCGAAGACGGTTCC
ATAGCTGGTTGCAGCATGGACGACGGCTCACTTGCCCATAATGATAATGT
TAGAGTGATGCGACTTCCATCAATCTACTCTGAACAACGTATGCGGAGCG
AGGTATTCACAGGACCTGTTGCGTCTATCAAACGGTTCGCTAAGACAGTT
CGATCAGTCGAGAAGGGCTCCGAATGTGGGGTAAGTCTAAAAGGGTGGTC
TAGTTTCGAAGAGGGGGACATCATAGAAGTGATAACGGAAAAGGCGTGA

protein sequence of Gchil5635.t1

>Gchil5635.t1 ID=Gchil5635.t1|Name=Gchil5635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=733bp
MAQISRIGILNFIARAWTNSQVLIPGGCLRANNFGKREWSRSMAMAATRE
ANEGSDRRARGDTKSRKQARPPRQRDPTWRKQQYAGRRPSPSKRRPQVLP
IREVVLPDIGLSSQQLAALAECLEEDVFKVAKDLDDAVFTPRSVLAPALV
ELVTEELHLRLSLKPQTERLVAPEETAIVSSGEIDWRAPIITVMGHVDHG
KTSLLDALRHSDVAKREAGGITQSVAAFQVPLSKEDGSSKKTFATFIDTP
GHAAFKAMRASGAVVTDIVVLVVAADDGVMPQTVEAANLARQANVPIIVA
INKCDMPGADPERVRYQLLDRLGLNTEQLGGDIQCVDISAKTGANLPQLL
DAILLQADMSDLRASPHAPGAGICLESRLDRSLGSVATVVVRSGTLRVGN
HVVFQSPKMLRGDLFGRIRSIIASDSTSLKEAVPGMTVGIVGIKTNIPPG
AEVRAVASEKIAKSKSREMILRNLAAASTIELANSLLLKREAEMTTRVES
ESPTQVLEEEGQIADEGVKRTLLVLVKGDVQGSADAVAQCIQSLETAHLD
VRILSVGVGEINDMDLKIISASKHVKESAEEPIIVAFNVKAKDSAVKTAK
RYAIPILSHSLIYHLEDDVKDQIHKLLSAFQTVVEITGTASVVRVFEDGS
IAGCSMDDGSLAHNDNVRVMRLPSIYSEQRMRSEVFTGPVASIKRFAKTV
RSVEKGSECGVSLKGWSSFEEGDIIEVITEKA*

mRNA from alignment at tig00000015_pilon:270932..273130-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5635.t1 ID=Gchil5635.t1|Name=Gchil5635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at tig00000015_pilon:270932..273130- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCAAATATCTCGGATAGGGATATTGAATTTCATTGCTCGGGCGTG
GACCAATTCACAAGTTCTCATCCCAGGTGGATGCCTGCGGGCCAACAATT
TTGGAAAGCGAGAGTGGTCAAGAAGTATGGCGATGGCCGCCACGAGGGAG
GCGAATGAAGGATCGGATAGACGAGCTAGAGGTGATACGAAATCGAGGAA
ACAAGCACGACCTCCTCGTCAGCGCGATCCTACTTGGAGAAAACAACAGT
ATGCAGGGAGGAGACCATCACCGTCCAAACGAAGACCACAAGTTCTTCCT
ATTCGCGAAGTCGTGCTTCCCGACATAGGGCTTTCATCACAGCAGCTAGC
CGCATTAGCTGAATGTTTGGAAGAAGATGTTTTCAAAGTGGCAAAGGATT
TGGATGATGCCGTATTCACGCCAAGATCTGTGCTCGCTCCGGCGCTTGTA
GAGCTAGTTACGGAGGAACTACATCTAAGATTGTCGTTAAAACCACAGAC
CGAACGCTTGGTTGCTCCGGAAGAAACAGCGATTGTGAGCAGTGGTGAGA
TCGACTGGAGAGCACCAATCATAACTGTTATGGGTCACGTTGATCATGGA
AAAACCTCTCTTCTTGATGCTCTGAGACATAGCGACGTTGCGAAACGGGA
AGCTGGAGGCATCACCCAAAGTGTCGCCGCTTTTCAGGTACCACTATCGA
AAGAAGATGGTAGTTCGAAGAAGACGTTTGCCACCTTCATTGACACACCC
GGACACGCAGCTTTTAAAGCAATGCGTGCAAGCGGAGCAGTAGTGACGGA
CATTGTCGTACTAGTTGTTGCGGCAGACGACGGTGTCATGCCTCAAACCG
TAGAGGCTGCAAATTTAGCTCGCCAAGCGAATGTTCCAATCATCGTCGCT
ATCAACAAATGCGATATGCCTGGCGCAGACCCAGAGCGTGTTAGATATCA
ACTTTTAGACCGACTTGGGCTCAACACTGAACAACTCGGTGGCGACATAC
AGTGCGTGGACATCTCCGCAAAGACAGGAGCAAACCTGCCGCAATTGCTC
GACGCTATCTTATTACAAGCCGACATGTCAGATCTCCGCGCGAGTCCACA
TGCACCCGGCGCCGGAATATGCTTAGAGTCACGTCTAGACCGCTCACTGG
GCTCAGTAGCAACAGTTGTGGTGCGTAGTGGGACGTTGCGCGTTGGCAAC
CATGTTGTTTTCCAATCGCCCAAAATGCTTCGGGGAGATTTGTTCGGTCG
TATTCGCAGCATCATCGCGAGCGATTCCACATCTCTTAAGGAGGCAGTGC
CTGGTATGACCGTCGGTATCGTCGGCATAAAGACAAATATTCCTCCGGGG
GCCGAAGTAAGGGCTGTGGCTAGTGAGAAGATTGCGAAATCAAAGTCGCG
TGAAATGATTCTCAGAAATCTGGCGGCTGCTTCAACGATAGAGCTGGCCA
ATTCGCTACTGCTGAAACGTGAGGCAGAGATGACCACGAGAGTGGAAAGT
GAATCGCCGACACAAGTTCTAGAAGAAGAGGGGCAAATTGCAGATGAAGG
TGTGAAACGGACACTTCTCGTGCTTGTAAAGGGCGATGTACAGGGTAGTG
CGGACGCCGTAGCACAATGCATCCAATCGTTAGAAACAGCTCATCTGGAC
GTTCGCATTCTTAGCGTCGGTGTCGGAGAGATCAATGATATGGATCTCAA
AATCATATCGGCCAGCAAGCATGTGAAGGAAAGCGCAGAAGAGCCAATAA
TCGTAGCGTTTAATGTGAAAGCCAAAGACTCTGCTGTGAAAACAGCGAAA
CGATACGCGATCCCAATATTGTCTCATTCGTTGATTTACCACCTTGAAGA
TGACGTCAAGGATCAAATTCACAAACTTTTGTCCGCATTCCAAACTGTGG
TCGAAATCACGGGAACTGCTTCCGTGGTACGTGTGTTCGAAGACGGTTCC
ATAGCTGGTTGCAGCATGGACGACGGCTCACTTGCCCATAATGATAATGT
TAGAGTGATGCGACTTCCATCAATCTACTCTGAACAACGTATGCGGAGCG
AGGTATTCACAGGACCTGTTGCGTCTATCAAACGGTTCGCTAAGACAGTT
CGATCAGTCGAGAAGGGCTCCGAATGTGGGGTAAGTCTAAAAGGGTGGTC
TAGTTTCGAAGAGGGGGACATCATAGAAGTGATAACGGAAAAGGCGTGA

Coding sequence (CDS) from alignment at tig00000015_pilon:270932..273130-

>Gchil5635.t1 ID=Gchil5635.t1|Name=Gchil5635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2199bp|location=Sequence derived from alignment at tig00000015_pilon:270932..273130- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCAAATATCTCGGATAGGGATATTGAATTTCATTGCTCGGGCGTG
GACCAATTCACAAGTTCTCATCCCAGGTGGATGCCTGCGGGCCAACAATT
TTGGAAAGCGAGAGTGGTCAAGAAGTATGGCGATGGCCGCCACGAGGGAG
GCGAATGAAGGATCGGATAGACGAGCTAGAGGTGATACGAAATCGAGGAA
ACAAGCACGACCTCCTCGTCAGCGCGATCCTACTTGGAGAAAACAACAGT
ATGCAGGGAGGAGACCATCACCGTCCAAACGAAGACCACAAGTTCTTCCT
ATTCGCGAAGTCGTGCTTCCCGACATAGGGCTTTCATCACAGCAGCTAGC
CGCATTAGCTGAATGTTTGGAAGAAGATGTTTTCAAAGTGGCAAAGGATT
TGGATGATGCCGTATTCACGCCAAGATCTGTGCTCGCTCCGGCGCTTGTA
GAGCTAGTTACGGAGGAACTACATCTAAGATTGTCGTTAAAACCACAGAC
CGAACGCTTGGTTGCTCCGGAAGAAACAGCGATTGTGAGCAGTGGTGAGA
TCGACTGGAGAGCACCAATCATAACTGTTATGGGTCACGTTGATCATGGA
AAAACCTCTCTTCTTGATGCTCTGAGACATAGCGACGTTGCGAAACGGGA
AGCTGGAGGCATCACCCAAAGTGTCGCCGCTTTTCAGGTACCACTATCGA
AAGAAGATGGTAGTTCGAAGAAGACGTTTGCCACCTTCATTGACACACCC
GGACACGCAGCTTTTAAAGCAATGCGTGCAAGCGGAGCAGTAGTGACGGA
CATTGTCGTACTAGTTGTTGCGGCAGACGACGGTGTCATGCCTCAAACCG
TAGAGGCTGCAAATTTAGCTCGCCAAGCGAATGTTCCAATCATCGTCGCT
ATCAACAAATGCGATATGCCTGGCGCAGACCCAGAGCGTGTTAGATATCA
ACTTTTAGACCGACTTGGGCTCAACACTGAACAACTCGGTGGCGACATAC
AGTGCGTGGACATCTCCGCAAAGACAGGAGCAAACCTGCCGCAATTGCTC
GACGCTATCTTATTACAAGCCGACATGTCAGATCTCCGCGCGAGTCCACA
TGCACCCGGCGCCGGAATATGCTTAGAGTCACGTCTAGACCGCTCACTGG
GCTCAGTAGCAACAGTTGTGGTGCGTAGTGGGACGTTGCGCGTTGGCAAC
CATGTTGTTTTCCAATCGCCCAAAATGCTTCGGGGAGATTTGTTCGGTCG
TATTCGCAGCATCATCGCGAGCGATTCCACATCTCTTAAGGAGGCAGTGC
CTGGTATGACCGTCGGTATCGTCGGCATAAAGACAAATATTCCTCCGGGG
GCCGAAGTAAGGGCTGTGGCTAGTGAGAAGATTGCGAAATCAAAGTCGCG
TGAAATGATTCTCAGAAATCTGGCGGCTGCTTCAACGATAGAGCTGGCCA
ATTCGCTACTGCTGAAACGTGAGGCAGAGATGACCACGAGAGTGGAAAGT
GAATCGCCGACACAAGTTCTAGAAGAAGAGGGGCAAATTGCAGATGAAGG
TGTGAAACGGACACTTCTCGTGCTTGTAAAGGGCGATGTACAGGGTAGTG
CGGACGCCGTAGCACAATGCATCCAATCGTTAGAAACAGCTCATCTGGAC
GTTCGCATTCTTAGCGTCGGTGTCGGAGAGATCAATGATATGGATCTCAA
AATCATATCGGCCAGCAAGCATGTGAAGGAAAGCGCAGAAGAGCCAATAA
TCGTAGCGTTTAATGTGAAAGCCAAAGACTCTGCTGTGAAAACAGCGAAA
CGATACGCGATCCCAATATTGTCTCATTCGTTGATTTACCACCTTGAAGA
TGACGTCAAGGATCAAATTCACAAACTTTTGTCCGCATTCCAAACTGTGG
TCGAAATCACGGGAACTGCTTCCGTGGTACGTGTGTTCGAAGACGGTTCC
ATAGCTGGTTGCAGCATGGACGACGGCTCACTTGCCCATAATGATAATGT
TAGAGTGATGCGACTTCCATCAATCTACTCTGAACAACGTATGCGGAGCG
AGGTATTCACAGGACCTGTTGCGTCTATCAAACGGTTCGCTAAGACAGTT
CGATCAGTCGAGAAGGGCTCCGAATGTGGGGTAAGTCTAAAAGGGTGGTC
TAGTTTCGAAGAGGGGGACATCATAGAAGTGATAACGGAAAAGGCGTGA