Gchil5629.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5629.t1
Unique NameGchil5629.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:91208..92287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1304883.KI912532_gene340
Preferred namepyrC
PFAMsAmidohydro_1
Max annot lvl206389|Rhodocyclales
KEGG rclassRC00632
KEGG koko:K01465
KEGG ReactionR01993
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
Evalue5.46e-125
EggNOG OGsCOG0418@1|root,COG0418@2|Bacteria,1MUYP@1224|Proteobacteria,2VH6F@28216|Betaproteobacteria,2KVK1@206389|Rhodocyclales
EC3.5.2.3
DescriptionCatalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5629Gchil5629Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 91208..92287 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5629.t1.stop1Gchil5629.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 91208..91210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5629.t1.CDS1Gchil5629.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 91208..92287 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5629.t1.exon1Gchil5629.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 91208..92287 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5629.t1.start1Gchil5629.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 92285..92287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5629.t1Gchil5629.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 91208..92287 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5629.t1 ID=Gchil5629.t1|Name=Gchil5629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MPVTTVDASPTSLTIRRPDDFHVHFRDEQMLKIVAPYTARIFARAIVMPN
LQPPVCTAQHATAYRTRIKRSLPDNPHFEPLMTLYLTDNTTSQVIREAHA
SGFVKACKLYPAGATTNSASGVTAVENVFNAIEAMQQLGMVLCVHGESTE
ANVEIFDREQRFIELTLPILLERFPTLKIVLEHVTTSEAVQIVEHTPGNR
LAATITAHHLLYSLQAIFEGAKIRPAMFCLPILKREIHRKALLRAIAEDN
QGKFFAGTDSAPHLETSKFCSAGCAGIFSAHIALELYAEAFEQAGCLNKL
EAFVSEHGARFYGLPLNQGSITLVKRARTVASKVPVPDLGSLVPLRAGDQ
VQWSVQKVD*
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spliced messenger RNA

>Gchil5629.t1 ID=Gchil5629.t1|Name=Gchil5629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000015_pilon:91208..92287- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTGACCACTGTCGACGCCTCGCCCACAAGCCTCACTATACGCCG
TCCCGATGACTTTCACGTTCACTTTCGTGATGAACAAATGCTCAAAATCG
TCGCACCATACACAGCCCGCATTTTTGCCAGAGCCATCGTCATGCCAAAT
CTCCAACCCCCGGTCTGCACCGCTCAACATGCCACCGCCTACAGGACAAG
GATAAAGCGTTCCCTGCCGGACAACCCTCATTTCGAACCACTGATGACGC
TCTACCTCACGGACAACACGACCTCACAAGTCATTCGTGAAGCGCACGCG
TCTGGTTTCGTTAAGGCTTGCAAATTATACCCTGCTGGCGCCACAACCAA
CTCGGCCAGCGGTGTCACGGCCGTGGAAAACGTGTTCAACGCGATAGAGG
CAATGCAGCAACTCGGGATGGTTTTATGTGTGCACGGCGAATCCACCGAA
GCAAATGTGGAGATTTTCGATCGAGAACAACGTTTTATTGAACTCACCCT
TCCCATTCTTCTTGAGCGTTTTCCAACTCTTAAGATTGTTTTGGAACATG
TCACAACATCGGAGGCCGTGCAGATCGTCGAACACACGCCAGGCAATAGA
CTTGCCGCCACCATCACAGCTCATCATTTGCTTTACTCTCTCCAAGCCAT
TTTCGAAGGTGCCAAGATTCGACCAGCCATGTTCTGTCTGCCCATCTTGA
AACGTGAGATACACAGAAAGGCATTGCTCAGGGCTATTGCTGAGGATAAC
CAAGGCAAATTCTTTGCCGGAACTGATTCTGCACCACACCTCGAAACCTC
CAAGTTCTGTAGCGCCGGATGTGCGGGCATCTTTTCGGCACATATTGCTC
TTGAGCTCTATGCCGAAGCCTTTGAACAAGCTGGCTGTTTGAATAAACTC
GAAGCCTTTGTCAGTGAACATGGGGCACGTTTCTATGGTCTGCCGTTGAA
TCAAGGTTCTATCACGTTGGTCAAAAGAGCTCGAACCGTTGCCTCGAAGG
TGCCAGTTCCGGATCTTGGTTCTCTTGTACCGCTTCGCGCAGGGGATCAA
GTTCAGTGGTCTGTTCAAAAGGTTGATTAG
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protein sequence of Gchil5629.t1

>Gchil5629.t1 ID=Gchil5629.t1|Name=Gchil5629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MPVTTVDASPTSLTIRRPDDFHVHFRDEQMLKIVAPYTARIFARAIVMPN
LQPPVCTAQHATAYRTRIKRSLPDNPHFEPLMTLYLTDNTTSQVIREAHA
SGFVKACKLYPAGATTNSASGVTAVENVFNAIEAMQQLGMVLCVHGESTE
ANVEIFDREQRFIELTLPILLERFPTLKIVLEHVTTSEAVQIVEHTPGNR
LAATITAHHLLYSLQAIFEGAKIRPAMFCLPILKREIHRKALLRAIAEDN
QGKFFAGTDSAPHLETSKFCSAGCAGIFSAHIALELYAEAFEQAGCLNKL
EAFVSEHGARFYGLPLNQGSITLVKRARTVASKVPVPDLGSLVPLRAGDQ
VQWSVQKVD*
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mRNA from alignment at tig00000015_pilon:91208..92287-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5629.t1 ID=Gchil5629.t1|Name=Gchil5629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000015_pilon:91208..92287- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTGACCACTGTCGACGCCTCGCCCACAAGCCTCACTATACGCCG
TCCCGATGACTTTCACGTTCACTTTCGTGATGAACAAATGCTCAAAATCG
TCGCACCATACACAGCCCGCATTTTTGCCAGAGCCATCGTCATGCCAAAT
CTCCAACCCCCGGTCTGCACCGCTCAACATGCCACCGCCTACAGGACAAG
GATAAAGCGTTCCCTGCCGGACAACCCTCATTTCGAACCACTGATGACGC
TCTACCTCACGGACAACACGACCTCACAAGTCATTCGTGAAGCGCACGCG
TCTGGTTTCGTTAAGGCTTGCAAATTATACCCTGCTGGCGCCACAACCAA
CTCGGCCAGCGGTGTCACGGCCGTGGAAAACGTGTTCAACGCGATAGAGG
CAATGCAGCAACTCGGGATGGTTTTATGTGTGCACGGCGAATCCACCGAA
GCAAATGTGGAGATTTTCGATCGAGAACAACGTTTTATTGAACTCACCCT
TCCCATTCTTCTTGAGCGTTTTCCAACTCTTAAGATTGTTTTGGAACATG
TCACAACATCGGAGGCCGTGCAGATCGTCGAACACACGCCAGGCAATAGA
CTTGCCGCCACCATCACAGCTCATCATTTGCTTTACTCTCTCCAAGCCAT
TTTCGAAGGTGCCAAGATTCGACCAGCCATGTTCTGTCTGCCCATCTTGA
AACGTGAGATACACAGAAAGGCATTGCTCAGGGCTATTGCTGAGGATAAC
CAAGGCAAATTCTTTGCCGGAACTGATTCTGCACCACACCTCGAAACCTC
CAAGTTCTGTAGCGCCGGATGTGCGGGCATCTTTTCGGCACATATTGCTC
TTGAGCTCTATGCCGAAGCCTTTGAACAAGCTGGCTGTTTGAATAAACTC
GAAGCCTTTGTCAGTGAACATGGGGCACGTTTCTATGGTCTGCCGTTGAA
TCAAGGTTCTATCACGTTGGTCAAAAGAGCTCGAACCGTTGCCTCGAAGG
TGCCAGTTCCGGATCTTGGTTCTCTTGTACCGCTTCGCGCAGGGGATCAA
GTTCAGTGGTCTGTTCAAAAGGTTGATTAG
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Coding sequence (CDS) from alignment at tig00000015_pilon:91208..92287-

>Gchil5629.t1 ID=Gchil5629.t1|Name=Gchil5629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000015_pilon:91208..92287- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTGACCACTGTCGACGCCTCGCCCACAAGCCTCACTATACGCCG
TCCCGATGACTTTCACGTTCACTTTCGTGATGAACAAATGCTCAAAATCG
TCGCACCATACACAGCCCGCATTTTTGCCAGAGCCATCGTCATGCCAAAT
CTCCAACCCCCGGTCTGCACCGCTCAACATGCCACCGCCTACAGGACAAG
GATAAAGCGTTCCCTGCCGGACAACCCTCATTTCGAACCACTGATGACGC
TCTACCTCACGGACAACACGACCTCACAAGTCATTCGTGAAGCGCACGCG
TCTGGTTTCGTTAAGGCTTGCAAATTATACCCTGCTGGCGCCACAACCAA
CTCGGCCAGCGGTGTCACGGCCGTGGAAAACGTGTTCAACGCGATAGAGG
CAATGCAGCAACTCGGGATGGTTTTATGTGTGCACGGCGAATCCACCGAA
GCAAATGTGGAGATTTTCGATCGAGAACAACGTTTTATTGAACTCACCCT
TCCCATTCTTCTTGAGCGTTTTCCAACTCTTAAGATTGTTTTGGAACATG
TCACAACATCGGAGGCCGTGCAGATCGTCGAACACACGCCAGGCAATAGA
CTTGCCGCCACCATCACAGCTCATCATTTGCTTTACTCTCTCCAAGCCAT
TTTCGAAGGTGCCAAGATTCGACCAGCCATGTTCTGTCTGCCCATCTTGA
AACGTGAGATACACAGAAAGGCATTGCTCAGGGCTATTGCTGAGGATAAC
CAAGGCAAATTCTTTGCCGGAACTGATTCTGCACCACACCTCGAAACCTC
CAAGTTCTGTAGCGCCGGATGTGCGGGCATCTTTTCGGCACATATTGCTC
TTGAGCTCTATGCCGAAGCCTTTGAACAAGCTGGCTGTTTGAATAAACTC
GAAGCCTTTGTCAGTGAACATGGGGCACGTTTCTATGGTCTGCCGTTGAA
TCAAGGTTCTATCACGTTGGTCAAAAGAGCTCGAACCGTTGCCTCGAAGG
TGCCAGTTCCGGATCTTGGTTCTCTTGTACCGCTTCGCGCAGGGGATCAA
GTTCAGTGGTCTGTTCAAAAGGTTGATTAG
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