Gchil561.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil561.t1
Unique NameGchil561.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:154259..155480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil561Gchil561Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 154259..155480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil561.t1Gchil561.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 154259..155480 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil561.t1.stop1Gchil561.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 154259..154261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil561.t1.CDS1Gchil561.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 154259..154631 -
Gchil561.t1.CDS2Gchil561.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 154761..154997 -
Gchil561.t1.CDS3Gchil561.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 155071..155480 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil561.t1.exon1Gchil561.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 154259..154631 -
Gchil561.t1.exon2Gchil561.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 154761..154997 -
Gchil561.t1.exon3Gchil561.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 155071..155480 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil561.t1.intron1Gchil561.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 154632..154760 -
Gchil561.t1.intron2Gchil561.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 154998..155070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil561.t1.start1Gchil561.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 155478..155480 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil561.t1 ID=Gchil561.t1|Name=Gchil561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=340bp
MSAKLNVYLMLLSLVVCVSNTRIKKSTIQVTHQLFDLTNNISRSTTVPFN
LYTRLPLRSRPLIALLPGAFVLASDYERLSSAFAYRGFIVAVPQYDQRPF
PASLTFRDILAHLRFTSTLTPPCPQNGQLPSAALISSLLTHVSQYSNSHH
LLRKILVDRTVIFGHSAGGASALHLVSGQCAKINPLGLSSSSFGCERVVQ
LPPPARIVGLALFEGIPPFAPFRFQIPADMFVSVLESQFYNGNTEAILQP
NGNLLEALISDANHFGPNDFTNATMIPRCALPRPREAMFRTNYLTQRTVI
STIATIVSRSYRVFFKGHDKRILTKLPIVNPRVETLSIS*
back to top

spliced messenger RNA

>Gchil561.t1 ID=Gchil561.t1|Name=Gchil561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004380_pilon:154259..155480- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCAAACTCAACGTCTATCTTATGCTTCTCTCTCTCGTTGTGTG
CGTCTCCAATACGCGCATCAAGAAAAGCACAATCCAAGTTACGCACCAAC
TATTCGACTTGACAAACAACATCTCCCGCAGCACCACAGTGCCATTCAAT
CTGTACACACGCCTTCCACTTCGTTCCAGGCCCCTTATTGCCCTGCTTCC
AGGCGCCTTCGTTCTTGCCTCCGACTACGAGCGTCTGTCATCCGCCTTTG
CGTACCGAGGTTTCATTGTCGCAGTCCCGCAATATGACCAACGTCCATTC
CCTGCATCTCTCACTTTCCGCGATATACTGGCACATCTCCGGTTCACCTC
CACCCTGACACCACCGTGTCCACAAAACGGACAGCTTCCATCTGCGGCTC
TTATTTCAAGCCTCCTCACACATGTGTCCCAATACTCAAATTCACACCAC
TTGCTTCGCAAAATCCTCGTCGATCGTACCGTTATATTCGGTCATAGTGC
CGGCGGAGCCTCTGCTCTCCATCTTGTATCAGGACAATGTGCGAAGATAA
ATCCTTTGGGCTTGTCGTCATCTAGCTTCGGGTGTGAGCGAGTGGTGCAG
CTACCGCCTCCGGCACGCATAGTCGGTTTGGCTCTGTTCGAAGGCATACC
TCCGTTCGCGCCTTTCAGATTCCAGATTCCGGCCGATATGTTTGTCTCCG
TATTGGAATCACAGTTTTATAACGGAAACACTGAAGCCATTCTCCAACCG
AACGGTAACTTGCTGGAAGCTCTCATTTCCGATGCCAATCATTTTGGCCC
TAACGACTTCACCAATGCAACCATGATACCCCGCTGCGCTCTTCCTCGAC
CTCGTGAAGCCATGTTCCGTACAAATTACCTCACCCAGCGCACGGTCATT
TCAACCATCGCCACAATTGTCAGCCGAAGCTACCGCGTCTTTTTCAAGGG
ACATGATAAAAGGATACTTACGAAACTACCCATTGTCAATCCCCGAGTGG
AGACGTTGTCCATTAGCTGA
back to top

protein sequence of Gchil561.t1

>Gchil561.t1 ID=Gchil561.t1|Name=Gchil561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MSAKLNVYLMLLSLVVCVSNTRIKKSTIQVTHQLFDLTNNISRSTTVPFN
LYTRLPLRSRPLIALLPGAFVLASDYERLSSAFAYRGFIVAVPQYDQRPF
PASLTFRDILAHLRFTSTLTPPCPQNGQLPSAALISSLLTHVSQYSNSHH
LLRKILVDRTVIFGHSAGGASALHLVSGQCAKINPLGLSSSSFGCERVVQ
LPPPARIVGLALFEGIPPFAPFRFQIPADMFVSVLESQFYNGNTEAILQP
NGNLLEALISDANHFGPNDFTNATMIPRCALPRPREAMFRTNYLTQRTVI
STIATIVSRSYRVFFKGHDKRILTKLPIVNPRVETLSIS*
back to top

mRNA from alignment at tig00004380_pilon:154259..155480-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil561.t1 ID=Gchil561.t1|Name=Gchil561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1222bp|location=Sequence derived from alignment at tig00004380_pilon:154259..155480- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCCAAACTCAACGTCTATCTTATGCTTCTCTCTCTCGTTGTGTG
CGTCTCCAATACGCGCATCAAGAAAAGCACAATCCAAGTTACGCACCAAC
TATTCGACTTGACAAACAACATCTCCCGCAGCACCACAGTGCCATTCAAT
CTGTACACACGCCTTCCACTTCGTTCCAGGCCCCTTATTGCCCTGCTTCC
AGGCGCCTTCGTTCTTGCCTCCGACTACGAGCGTCTGTCATCCGCCTTTG
CGTACCGAGGTTTCATTGTCGCAGTCCCGCAATATGACCAACGTCCATTC
CCTGCATCTCTCACTTTCCGCGATATACTGGCACATCTCCGGTTCACCTC
CACCCTGACACCACCGTGTCCACAAAACGGACAGCTTCCATCTGCGGCTC
TTATTTCAAGGTAAGAGTTCTATCCCTTGTTACCGTATGGGACGTCACTA
ACCATATGCCCCTACCATCTGCATGGAAACCAGCCTCCTCACACATGTGT
CCCAATACTCAAATTCACACCACTTGCTTCGCAAAATCCTCGTCGATCGT
ACCGTTATATTCGGTCATAGTGCCGGCGGAGCCTCTGCTCTCCATCTTGT
ATCAGGACAATGTGCGAAGATAAATCCTTTGGGCTTGTCGTCATCTAGCT
TCGGGTGTGAGCGAGTGGTGCAGCTACCGCCTCCGGCACGCATAGTCGGT
TTGGCTCTGTTCGAAGGCATGTACGTCAAGGCACCAAAAACGCTCTTCCA
GCGCTTCATCTCGTCACCGATCAACTTGCCAGGACGATATTTCACTAGCT
TCACTGTCACTCCCAACTGACACTTAACTGCGTTTACCCCCACCAACAGA
CCTCCGTTCGCGCCTTTCAGATTCCAGATTCCGGCCGATATGTTTGTCTC
CGTATTGGAATCACAGTTTTATAACGGAAACACTGAAGCCATTCTCCAAC
CGAACGGTAACTTGCTGGAAGCTCTCATTTCCGATGCCAATCATTTTGGC
CCTAACGACTTCACCAATGCAACCATGATACCCCGCTGCGCTCTTCCTCG
ACCTCGTGAAGCCATGTTCCGTACAAATTACCTCACCCAGCGCACGGTCA
TTTCAACCATCGCCACAATTGTCAGCCGAAGCTACCGCGTCTTTTTCAAG
GGACATGATAAAAGGATACTTACGAAACTACCCATTGTCAATCCCCGAGT
GGAGACGTTGTCCATTAGCTGA
back to top

Coding sequence (CDS) from alignment at tig00004380_pilon:154259..155480-

>Gchil561.t1 ID=Gchil561.t1|Name=Gchil561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00004380_pilon:154259..155480- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCCAAACTCAACGTCTATCTTATGCTTCTCTCTCTCGTTGTGTG
CGTCTCCAATACGCGCATCAAGAAAAGCACAATCCAAGTTACGCACCAAC
TATTCGACTTGACAAACAACATCTCCCGCAGCACCACAGTGCCATTCAAT
CTGTACACACGCCTTCCACTTCGTTCCAGGCCCCTTATTGCCCTGCTTCC
AGGCGCCTTCGTTCTTGCCTCCGACTACGAGCGTCTGTCATCCGCCTTTG
CGTACCGAGGTTTCATTGTCGCAGTCCCGCAATATGACCAACGTCCATTC
CCTGCATCTCTCACTTTCCGCGATATACTGGCACATCTCCGGTTCACCTC
CACCCTGACACCACCGTGTCCACAAAACGGACAGCTTCCATCTGCGGCTC
TTATTTCAAGCCTCCTCACACATGTGTCCCAATACTCAAATTCACACCAC
TTGCTTCGCAAAATCCTCGTCGATCGTACCGTTATATTCGGTCATAGTGC
CGGCGGAGCCTCTGCTCTCCATCTTGTATCAGGACAATGTGCGAAGATAA
ATCCTTTGGGCTTGTCGTCATCTAGCTTCGGGTGTGAGCGAGTGGTGCAG
CTACCGCCTCCGGCACGCATAGTCGGTTTGGCTCTGTTCGAAGGCATACC
TCCGTTCGCGCCTTTCAGATTCCAGATTCCGGCCGATATGTTTGTCTCCG
TATTGGAATCACAGTTTTATAACGGAAACACTGAAGCCATTCTCCAACCG
AACGGTAACTTGCTGGAAGCTCTCATTTCCGATGCCAATCATTTTGGCCC
TAACGACTTCACCAATGCAACCATGATACCCCGCTGCGCTCTTCCTCGAC
CTCGTGAAGCCATGTTCCGTACAAATTACCTCACCCAGCGCACGGTCATT
TCAACCATCGCCACAATTGTCAGCCGAAGCTACCGCGTCTTTTTCAAGGG
ACATGATAAAAGGATACTTACGAAACTACCCATTGTCAATCCCCGAGTGG
AGACGTTGTCCATTAGCTGA
back to top