Gchil560.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil560.t1
Unique NameGchil560.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:151328..151748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9SSQ4
PFAMsTB2_DP1_HVA22
Max annot lvl4751|Fungi
KEGG koko:K17338
GOsGO:0006996,GO:0007029,GO:0008150,GO:0009987,GO:0010256,GO:0016043,GO:0061024,GO:0071786,GO:0071840,GO:0090158,GO:1990809
Evalue2.15e-12
EggNOG OGsCOG5052@1|root,KOG1726@2759|Eukaryota,3AA49@33154|Opisthokonta,3P1AY@4751|Fungi
DescriptionHVA22 domain membrane protein
COG categoryV
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil560Gchil560Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 151328..151748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil560.t1Gchil560.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 151328..151748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil560.t1.start1Gchil560.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 151328..151330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil560.t1.CDS1Gchil560.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 151328..151356 +
Gchil560.t1.CDS2Gchil560.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 151451..151748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil560.t1.exon1Gchil560.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 151328..151356 +
Gchil560.t1.exon2Gchil560.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 151451..151748 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil560.t1.intron1Gchil560.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 151357..151450 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil560.t1.stop1Gchil560.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 151746..151748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil560.t1 ID=Gchil560.t1|Name=Gchil560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=109bp
MWNLITNLSCHAVANLYASYNSYRALKNNASNVQLIHILITWLFTTVFLM
VSENVLDPLFGQWVPFYFFMKLLIVGWMVYPGTRGACYVFAKYVEPALPT
VPRRPTPS*
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spliced messenger RNA

>Gchil560.t1 ID=Gchil560.t1|Name=Gchil560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp|location=Sequence derived from alignment at tig00004380_pilon:151328..151748+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAACCTCATCACTAATCTCTCTTGTCATGCAGTAGCGAATCTCTA
CGCTTCGTACAACAGCTATCGTGCTCTAAAGAACAACGCATCAAACGTAC
AACTGATCCACATCCTGATCACATGGCTTTTCACCACAGTTTTTCTAATG
GTCAGCGAAAACGTTCTTGATCCGCTGTTTGGACAATGGGTACCGTTCTA
CTTTTTTATGAAGTTGCTGATTGTTGGGTGGATGGTTTATCCAGGAACTC
GAGGCGCTTGCTATGTTTTTGCAAAGTACGTCGAACCTGCTCTCCCCACA
GTTCCACGACGCCCGACACCGTCATGA
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protein sequence of Gchil560.t1

>Gchil560.t1 ID=Gchil560.t1|Name=Gchil560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=109bp
MWNLITNLSCHAVANLYASYNSYRALKNNASNVQLIHILITWLFTTVFLM
VSENVLDPLFGQWVPFYFFMKLLIVGWMVYPGTRGACYVFAKYVEPALPT
VPRRPTPS*
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mRNA from alignment at tig00004380_pilon:151328..151748+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil560.t1 ID=Gchil560.t1|Name=Gchil560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=421bp|location=Sequence derived from alignment at tig00004380_pilon:151328..151748+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGAACCTCATCACTAATCTCTCTTGGTAAGTGCTTTCCGAAAGCCT
GCCCAGCTCTTTCCAAGAAGGAAAAGAACCAAATCCATACCGAAGCACTA
ACTTGCTTTCCTTCTTCACCCAGTCATGCAGTAGCGAATCTCTACGCTTC
GTACAACAGCTATCGTGCTCTAAAGAACAACGCATCAAACGTACAACTGA
TCCACATCCTGATCACATGGCTTTTCACCACAGTTTTTCTAATGGTCAGC
GAAAACGTTCTTGATCCGCTGTTTGGACAATGGGTACCGTTCTACTTTTT
TATGAAGTTGCTGATTGTTGGGTGGATGGTTTATCCAGGAACTCGAGGCG
CTTGCTATGTTTTTGCAAAGTACGTCGAACCTGCTCTCCCCACAGTTCCA
CGACGCCCGACACCGTCATGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:151328..151748+

>Gchil560.t1 ID=Gchil560.t1|Name=Gchil560.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=327bp|location=Sequence derived from alignment at tig00004380_pilon:151328..151748+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGAACCTCATCACTAATCTCTCTTGTCATGCAGTAGCGAATCTCTA
CGCTTCGTACAACAGCTATCGTGCTCTAAAGAACAACGCATCAAACGTAC
AACTGATCCACATCCTGATCACATGGCTTTTCACCACAGTTTTTCTAATG
GTCAGCGAAAACGTTCTTGATCCGCTGTTTGGACAATGGGTACCGTTCTA
CTTTTTTATGAAGTTGCTGATTGTTGGGTGGATGGTTTATCCAGGAACTC
GAGGCGCTTGCTATGTTTTTGCAAAGTACGTCGAACCTGCTCTCCCCACA
GTTCCACGACGCCCGACACCGTCATGA
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