Gchil5588.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5588.t1
Unique NameGchil5588.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2585467..2586079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5679.XP_010702928.1
Max annot lvl5653|Kinetoplastida
Evalue8.57e-09
EggNOG OGs2CYZS@1|root,2S7GH@2759|Eukaryota,3XVTX@5653|Kinetoplastida
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5588Gchil5588Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2585467..2586079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5588.t1Gchil5588.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2585467..2586079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5588.t1.CDS1Gchil5588.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2585467..2585469 +
Gchil5588.t1.CDS2Gchil5588.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2585563..2585661 +
Gchil5588.t1.CDS3Gchil5588.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2585735..2586079 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5588.t1.exon1Gchil5588.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2585467..2585469 +
Gchil5588.t1.exon2Gchil5588.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2585563..2585661 +
Gchil5588.t1.exon3Gchil5588.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2585735..2586079 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5588.t1.start1Gchil5588.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2585467..2585469 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5588.t1.intron1Gchil5588.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2585470..2585562 +
Gchil5588.t1.intron2Gchil5588.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2585662..2585734 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5588.t1.stop1Gchil5588.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2586077..2586079 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5588.t1 ID=Gchil5588.t1|Name=Gchil5588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=149bp
MASQTDRKEEFRKYLDKGNVLSILTNVLTDLFEMEPKPEDPAQYLHQRIG
EAVYKDKTAATPNHTEAPQKDVEMKDNSQTTPAQQTKPADTETSAQKQSA
QESGDPKPAPPEQAKLSNQQPSQTEPVAATPATSSASAAPVSVPATNQ*
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spliced messenger RNA

>Gchil5588.t1 ID=Gchil5588.t1|Name=Gchil5588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00004418_pilon:2585467..2586079+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCCAAACTGATAGAAAGGAAGAGTTCAGAAAGTATCTCGACAA
AGGAAACGTACTTTCAATTCTTACAAATGTGCTCACCGATCTCTTTGAGA
TGGAGCCCAAACCAGAAGATCCCGCCCAATACCTCCACCAAAGGATAGGA
GAAGCCGTCTACAAAGACAAAACTGCAGCAACCCCGAACCACACTGAAGC
GCCACAAAAGGATGTTGAAATGAAGGACAATTCTCAAACAACTCCTGCCC
AACAAACCAAACCCGCAGACACTGAAACATCTGCCCAAAAGCAATCCGCC
CAAGAAAGCGGTGATCCAAAGCCAGCACCGCCCGAGCAAGCAAAGCTTTC
AAATCAGCAGCCATCTCAAACCGAGCCGGTCGCCGCGACCCCTGCTACTA
GTTCTGCCTCCGCAGCACCCGTATCTGTTCCAGCTACCAATCAGTAG
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protein sequence of Gchil5588.t1

>Gchil5588.t1 ID=Gchil5588.t1|Name=Gchil5588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=149bp
MASQTDRKEEFRKYLDKGNVLSILTNVLTDLFEMEPKPEDPAQYLHQRIG
EAVYKDKTAATPNHTEAPQKDVEMKDNSQTTPAQQTKPADTETSAQKQSA
QESGDPKPAPPEQAKLSNQQPSQTEPVAATPATSSASAAPVSVPATNQ*
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mRNA from alignment at tig00004418_pilon:2585467..2586079+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5588.t1 ID=Gchil5588.t1|Name=Gchil5588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=613bp|location=Sequence derived from alignment at tig00004418_pilon:2585467..2586079+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTACGTACCTCACCTCTTCGACGTTGCTCAGTAGCAGCGCTCGTGTC
TGACGTAGCTTGCTAACTGATCGGTTGTTCTATTCCCGCGCCCTAGGCCT
CCCAAACTGATAGAAAGGAAGAGTTCAGAAAGTATCTCGACAAAGGAAAC
GTACTTTCAATTCTTACAAATGTGCTCACCGATCTCTTTGAGATGGTACG
TTGACGCCTCCACAAGACCCCTTACTAAGCATCAATCTAACGATGAAACC
ACCCCTTTACTTCTGCAGGAGCCCAAACCAGAAGATCCCGCCCAATACCT
CCACCAAAGGATAGGAGAAGCCGTCTACAAAGACAAAACTGCAGCAACCC
CGAACCACACTGAAGCGCCACAAAAGGATGTTGAAATGAAGGACAATTCT
CAAACAACTCCTGCCCAACAAACCAAACCCGCAGACACTGAAACATCTGC
CCAAAAGCAATCCGCCCAAGAAAGCGGTGATCCAAAGCCAGCACCGCCCG
AGCAAGCAAAGCTTTCAAATCAGCAGCCATCTCAAACCGAGCCGGTCGCC
GCGACCCCTGCTACTAGTTCTGCCTCCGCAGCACCCGTATCTGTTCCAGC
TACCAATCAGTAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:2585467..2586079+

>Gchil5588.t1 ID=Gchil5588.t1|Name=Gchil5588.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=447bp|location=Sequence derived from alignment at tig00004418_pilon:2585467..2586079+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTCCCAAACTGATAGAAAGGAAGAGTTCAGAAAGTATCTCGACAA
AGGAAACGTACTTTCAATTCTTACAAATGTGCTCACCGATCTCTTTGAGA
TGGAGCCCAAACCAGAAGATCCCGCCCAATACCTCCACCAAAGGATAGGA
GAAGCCGTCTACAAAGACAAAACTGCAGCAACCCCGAACCACACTGAAGC
GCCACAAAAGGATGTTGAAATGAAGGACAATTCTCAAACAACTCCTGCCC
AACAAACCAAACCCGCAGACACTGAAACATCTGCCCAAAAGCAATCCGCC
CAAGAAAGCGGTGATCCAAAGCCAGCACCGCCCGAGCAAGCAAAGCTTTC
AAATCAGCAGCCATCTCAAACCGAGCCGGTCGCCGCGACCCCTGCTACTA
GTTCTGCCTCCGCAGCACCCGTATCTGTTCCAGCTACCAATCAGTAG
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