Gchil5585.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5585.t1
Unique NameGchil5585.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2576225..2576920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP53471
Preferred nameSRD5A3
PFAMsSteroid_dh
Max annot lvl33208|Metazoa
KEGG rclassRC00145
KEGG koko:K12345
KEGG ReactionR02208,R02497,R08954,R10242
KEGG Pathwayko00140,map00140
GOsGO:0003674,GO:0003824,GO:0003865,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006644,GO:0006694,GO:0006702,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008202,GO:0008209,GO:0008300,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016042,GO:0016093,GO:0016095,GO:0016229,GO:0016491,GO:0016627,GO:0016628,GO:0019348,GO:0019538,GO:0019637,GO:0031984,GO:0033765,GO:0034645,GO:0034754,GO:0036211,GO:0042175,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046164,GO:0046465,GO:0055114,GO:0065007,GO:0065008,GO:0070085,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616
Evalue8.16e-23
EggNOG OGsKOG1640@1|root,KOG1640@2759|Eukaryota,39G0Y@33154|Opisthokonta,3BB66@33208|Metazoa
EC1.3.1.22,1.3.1.94
DescriptionSteroid 5 alpha-reductase 3
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5585Gchil5585Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2576225..2576920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5585.t1Gchil5585.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2576225..2576920 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5585.t1.stop1Gchil5585.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2576225..2576227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5585.t1.CDS1Gchil5585.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2576225..2576551 -
Gchil5585.t1.CDS2Gchil5585.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2576636..2576920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5585.t1.exon1Gchil5585.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2576225..2576551 -
Gchil5585.t1.exon2Gchil5585.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2576636..2576920 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5585.t1.intron1Gchil5585.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2576552..2576635 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5585.t1.start1Gchil5585.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2576918..2576920 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5585.t1 ID=Gchil5585.t1|Name=Gchil5585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=204bp
MVWKMFYIVGLTSSGVCALLLKTTRHPVAILYTVQVARRLLECFFVHKFS
KTRLLSLSQFVSGTSYYVLSSVTIHLECYTMRLLDERIPLPRTILVLVTF
IFGSFAQHFSHRTLAHVTPRVGKYGLPRGFLFRYVICPHYFAEIVVYLSF
VLALQRTGSAFMLLFVVTNLTDSALRTKQWYAAIFKSETTSVRKRRAIFP
YVL*
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spliced messenger RNA

>Gchil5585.t1 ID=Gchil5585.t1|Name=Gchil5585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00004418_pilon:2576225..2576920- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTGGAAGATGTTTTACATCGTTGGACTCACAAGCTCTGGGGTCTG
TGCTCTCTTGCTTAAAACGACGAGACATCCTGTTGCTATTCTCTACACGG
TGCAAGTCGCTCGTCGACTTTTAGAATGTTTCTTTGTGCACAAATTTTCA
AAAACTCGATTGCTCTCTCTTTCTCAGTTTGTTTCCGGAACTTCTTACTA
TGTACTATCATCCGTAACCATTCACTTGGAGTGTTACACAATGAGATTAT
TGGATGAAAGAATACCTCTACCTCGAACGATTCTCGTTTTGGTGACTTTC
ATCTTTGGATCATTCGCACAACATTTTTCACACCGTACCCTTGCACACGT
TACACCCCGAGTGGGCAAATATGGCTTACCTCGCGGATTCTTGTTCCGTT
ACGTGATCTGTCCACATTACTTTGCTGAGATTGTGGTGTACCTATCATTC
GTCTTGGCATTGCAACGCACTGGTTCAGCGTTTATGCTCTTGTTCGTTGT
CACAAATCTCACTGACTCAGCTCTCCGCACAAAACAATGGTATGCAGCGA
TATTCAAATCAGAAACGACTTCCGTCAGAAAACGCCGTGCCATTTTTCCT
TACGTTTTGTAA
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protein sequence of Gchil5585.t1

>Gchil5585.t1 ID=Gchil5585.t1|Name=Gchil5585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=204bp
MVWKMFYIVGLTSSGVCALLLKTTRHPVAILYTVQVARRLLECFFVHKFS
KTRLLSLSQFVSGTSYYVLSSVTIHLECYTMRLLDERIPLPRTILVLVTF
IFGSFAQHFSHRTLAHVTPRVGKYGLPRGFLFRYVICPHYFAEIVVYLSF
VLALQRTGSAFMLLFVVTNLTDSALRTKQWYAAIFKSETTSVRKRRAIFP
YVL*
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mRNA from alignment at tig00004418_pilon:2576225..2576920-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5585.t1 ID=Gchil5585.t1|Name=Gchil5585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00004418_pilon:2576225..2576920- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTGGAAGATGTTTTACATCGTTGGACTCACAAGCTCTGGGGTCTG
TGCTCTCTTGCTTAAAACGACGAGACATCCTGTTGCTATTCTCTACACGG
TGCAAGTCGCTCGTCGACTTTTAGAATGTTTCTTTGTGCACAAATTTTCA
AAAACTCGATTGCTCTCTCTTTCTCAGTTTGTTTCCGGAACTTCTTACTA
TGTACTATCATCCGTAACCATTCACTTGGAGTGTTACACAATGAGATTAT
TGGATGAAAGAATACCTCTACCTCGAACGATTCTCGTAAGTACATTACAC
GATTATGTACAGCATTCTACAAACATTATAACTAACAGTTCACTTGACCC
TTTCTTCTGCATAAACTAGGTTTTGGTGACTTTCATCTTTGGATCATTCG
CACAACATTTTTCACACCGTACCCTTGCACACGTTACACCCCGAGTGGGC
AAATATGGCTTACCTCGCGGATTCTTGTTCCGTTACGTGATCTGTCCACA
TTACTTTGCTGAGATTGTGGTGTACCTATCATTCGTCTTGGCATTGCAAC
GCACTGGTTCAGCGTTTATGCTCTTGTTCGTTGTCACAAATCTCACTGAC
TCAGCTCTCCGCACAAAACAATGGTATGCAGCGATATTCAAATCAGAAAC
GACTTCCGTCAGAAAACGCCGTGCCATTTTTCCTTACGTTTTGTAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2576225..2576920-

>Gchil5585.t1 ID=Gchil5585.t1|Name=Gchil5585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00004418_pilon:2576225..2576920- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTGGAAGATGTTTTACATCGTTGGACTCACAAGCTCTGGGGTCTG
TGCTCTCTTGCTTAAAACGACGAGACATCCTGTTGCTATTCTCTACACGG
TGCAAGTCGCTCGTCGACTTTTAGAATGTTTCTTTGTGCACAAATTTTCA
AAAACTCGATTGCTCTCTCTTTCTCAGTTTGTTTCCGGAACTTCTTACTA
TGTACTATCATCCGTAACCATTCACTTGGAGTGTTACACAATGAGATTAT
TGGATGAAAGAATACCTCTACCTCGAACGATTCTCGTTTTGGTGACTTTC
ATCTTTGGATCATTCGCACAACATTTTTCACACCGTACCCTTGCACACGT
TACACCCCGAGTGGGCAAATATGGCTTACCTCGCGGATTCTTGTTCCGTT
ACGTGATCTGTCCACATTACTTTGCTGAGATTGTGGTGTACCTATCATTC
GTCTTGGCATTGCAACGCACTGGTTCAGCGTTTATGCTCTTGTTCGTTGT
CACAAATCTCACTGACTCAGCTCTCCGCACAAAACAATGGTATGCAGCGA
TATTCAAATCAGAAACGACTTCCGTCAGAAAACGCCGTGCCATTTTTCCT
TACGTTTTGTAA
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