Gchil5582.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5582.t1
Unique NameGchil5582.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2568767..2570308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog319224.Sputcn32_3442
Preferred nameprmA
PFAMsPrmA
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02687
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006480,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018011,GO:0018012,GO:0018022,GO:0018023,GO:0018193,GO:0018194,GO:0018205,GO:0019538,GO:0031365,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue5.13e-47
EggNOG OGsCOG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,1RNAR@1236|Gammaproteobacteria,2QA5F@267890|Shewanellaceae
DescriptionMethylates ribosomal protein L11
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5582Gchil5582Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2568767..2570308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5582.t1Gchil5582.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2568767..2570308 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5582.t1.start1Gchil5582.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2568767..2568769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5582.t1.CDS1Gchil5582.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2568767..2568850 +
Gchil5582.t1.CDS2Gchil5582.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2569601..2570308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5582.t1.exon1Gchil5582.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2568767..2568850 +
Gchil5582.t1.exon2Gchil5582.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2569601..2570308 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5582.t1.intron1Gchil5582.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2568851..2569600 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5582.t1.stop1Gchil5582.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2570306..2570308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5582.t1 ID=Gchil5582.t1|Name=Gchil5582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp
MSRKPNDEDVWFLDVLCDVYDYLWKLDTCDIEQVTMLIATQFNLNESPTF
SLQTDSFDEKDPETWVRQVQESFVPVVVGRIRISFPWHNLDPSFINVKLE
PGCAFGTGDHPTTKLCLAWLQRTVKHNMKVLDFGTGSGVLAIAAVLFSEG
VQAVGVDIDLNAVDTAKSNAERNQLRDKILFCENHDEPQGMKYDVIIANI
LAEPLKCLAPKLVQSMETGASIGLSGVLCHQAVDVMESYQREGVFLQQAE
VDNNWALLIGRRP*
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spliced messenger RNA

>Gchil5582.t1 ID=Gchil5582.t1|Name=Gchil5582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00004418_pilon:2568767..2570308+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGGAAGCCAAACGACGAAGACGTCTGGTTTCTGGATGTTTTATG
TGATGTCTATGACTATTTGTGGAAGCTGGACACGTGCGATATTGAACAAG
TCACAATGCTAATCGCAACACAGTTCAACTTGAATGAGTCGCCGACTTTC
TCGCTACAAACAGATTCTTTCGATGAGAAAGATCCAGAAACATGGGTTCG
ACAAGTGCAAGAATCGTTTGTTCCTGTAGTTGTTGGTCGGATTCGTATTT
CCTTCCCATGGCATAATTTAGATCCTTCTTTCATAAACGTGAAGCTAGAG
CCAGGATGTGCCTTTGGCACTGGTGACCATCCTACAACGAAGCTTTGTCT
AGCTTGGCTTCAAAGAACCGTTAAGCATAATATGAAGGTGCTGGACTTTG
GAACCGGAAGTGGAGTGCTAGCGATTGCAGCGGTTCTATTCAGCGAAGGT
GTCCAAGCCGTCGGAGTTGATATTGATTTGAATGCAGTGGATACTGCAAA
ATCAAATGCTGAAAGAAACCAATTGAGAGATAAGATTCTTTTCTGTGAAA
ATCACGACGAACCTCAGGGTATGAAGTATGATGTTATCATCGCTAACATT
TTGGCTGAACCACTGAAATGCCTCGCACCAAAATTGGTTCAAAGTATGGA
GACTGGAGCGTCTATCGGTCTTTCCGGTGTGCTGTGCCATCAAGCCGTCG
ACGTTATGGAAAGTTATCAGCGGGAAGGCGTGTTCCTTCAGCAAGCGGAA
GTAGACAATAATTGGGCACTGTTGATCGGGCGAAGACCTTAA
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protein sequence of Gchil5582.t1

>Gchil5582.t1 ID=Gchil5582.t1|Name=Gchil5582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=264bp
MSRKPNDEDVWFLDVLCDVYDYLWKLDTCDIEQVTMLIATQFNLNESPTF
SLQTDSFDEKDPETWVRQVQESFVPVVVGRIRISFPWHNLDPSFINVKLE
PGCAFGTGDHPTTKLCLAWLQRTVKHNMKVLDFGTGSGVLAIAAVLFSEG
VQAVGVDIDLNAVDTAKSNAERNQLRDKILFCENHDEPQGMKYDVIIANI
LAEPLKCLAPKLVQSMETGASIGLSGVLCHQAVDVMESYQREGVFLQQAE
VDNNWALLIGRRP*
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mRNA from alignment at tig00004418_pilon:2568767..2570308+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5582.t1 ID=Gchil5582.t1|Name=Gchil5582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004418_pilon:2568767..2570308+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAGGAAGCCAAACGACGAAGACGTCTGGTTTCTGGATGTTTTATG
TGATGTCTATGACTATTTGTGGAAGCTGGACACGGTATGTGCGTCGCCAC
AGATATGGTTTTGAAACAGACtaaatattcatcactgtatcattcgcagt
ctctacctattttactccttctttctgtcgtttttctttgacttcatttt
tttgccctatgctgagctggtactctcgagagcatatctactacttgtgt
ccccttgggttgttaccacccgcgttgtgtccccttcctactttcacgga
tagacgtttacaACGTGGTTCTATTCCTGCTCGAACAAACAATCCTCGAT
TGCGAGAACTCATTGAACGACCCAAAGAGTAACAAAGCATCACCGACACA
TGTTCGCGAGATGCAGAGATTTGTTTCTGCTCTTTCCCCGACTACCTTCG
TAAGGTACAGCTACAAAATCTAATACAGAGTACAGCGCATGCCATTGAAA
AAGATACAGATACGTACAGATTGGGAATAAAGTTTGAAGCGCACTGAACT
GCGGCGCAGCAACTCCAACTGCCTGATCTAACATTAGCGCATTGAATAAT
CTAGAGATGCCTCTTCATCGCATTCAGATATCGGTCAAATCTTGCACAGA
TACTGGCTACATATCTGACATACTCTTTGAATTAGGCGCTCTATCAGTCT
CAGTGGAGGATGGCTTCCGTGGAACTGACGGAGAAACCCCTATTTTTGAT
CAACCTCCTTTGTCCGGAACGTTGGCGACAAAAACACCTTCACTCTGGCA
GAACGCGAACATCTCTGCCCTGTATCCATTACAGTGCGATATTGAACAAG
TCACAATGCTAATCGCAACACAGTTCAACTTGAATGAGTCGCCGACTTTC
TCGCTACAAACAGATTCTTTCGATGAGAAAGATCCAGAAACATGGGTTCG
ACAAGTGCAAGAATCGTTTGTTCCTGTAGTTGTTGGTCGGATTCGTATTT
CCTTCCCATGGCATAATTTAGATCCTTCTTTCATAAACGTGAAGCTAGAG
CCAGGATGTGCCTTTGGCACTGGTGACCATCCTACAACGAAGCTTTGTCT
AGCTTGGCTTCAAAGAACCGTTAAGCATAATATGAAGGTGCTGGACTTTG
GAACCGGAAGTGGAGTGCTAGCGATTGCAGCGGTTCTATTCAGCGAAGGT
GTCCAAGCCGTCGGAGTTGATATTGATTTGAATGCAGTGGATACTGCAAA
ATCAAATGCTGAAAGAAACCAATTGAGAGATAAGATTCTTTTCTGTGAAA
ATCACGACGAACCTCAGGGTATGAAGTATGATGTTATCATCGCTAACATT
TTGGCTGAACCACTGAAATGCCTCGCACCAAAATTGGTTCAAAGTATGGA
GACTGGAGCGTCTATCGGTCTTTCCGGTGTGCTGTGCCATCAAGCCGTCG
ACGTTATGGAAAGTTATCAGCGGGAAGGCGTGTTCCTTCAGCAAGCGGAA
GTAGACAATAATTGGGCACTGTTGATCGGGCGAAGACCTTAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2568767..2570308+

>Gchil5582.t1 ID=Gchil5582.t1|Name=Gchil5582.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00004418_pilon:2568767..2570308+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAGGAAGCCAAACGACGAAGACGTCTGGTTTCTGGATGTTTTATG
TGATGTCTATGACTATTTGTGGAAGCTGGACACGTGCGATATTGAACAAG
TCACAATGCTAATCGCAACACAGTTCAACTTGAATGAGTCGCCGACTTTC
TCGCTACAAACAGATTCTTTCGATGAGAAAGATCCAGAAACATGGGTTCG
ACAAGTGCAAGAATCGTTTGTTCCTGTAGTTGTTGGTCGGATTCGTATTT
CCTTCCCATGGCATAATTTAGATCCTTCTTTCATAAACGTGAAGCTAGAG
CCAGGATGTGCCTTTGGCACTGGTGACCATCCTACAACGAAGCTTTGTCT
AGCTTGGCTTCAAAGAACCGTTAAGCATAATATGAAGGTGCTGGACTTTG
GAACCGGAAGTGGAGTGCTAGCGATTGCAGCGGTTCTATTCAGCGAAGGT
GTCCAAGCCGTCGGAGTTGATATTGATTTGAATGCAGTGGATACTGCAAA
ATCAAATGCTGAAAGAAACCAATTGAGAGATAAGATTCTTTTCTGTGAAA
ATCACGACGAACCTCAGGGTATGAAGTATGATGTTATCATCGCTAACATT
TTGGCTGAACCACTGAAATGCCTCGCACCAAAATTGGTTCAAAGTATGGA
GACTGGAGCGTCTATCGGTCTTTCCGGTGTGCTGTGCCATCAAGCCGTCG
ACGTTATGGAAAGTTATCAGCGGGAAGGCGTGTTCCTTCAGCAAGCGGAA
GTAGACAATAATTGGGCACTGTTGATCGGGCGAAGACCTTAA
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