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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704916.1 |
| Preferred name | CHAF1B |
| PFAMs | CAF-1_p60_C,WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10751 |
| GOs | GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006338,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0008593,GO:0009058,GO:0009059,GO:0009555,GO:0009653,GO:0009888,GO:0009933,GO:0009966,GO:0009967,GO:0009987,GO:0010026,GO:0010646,GO:0010647,GO:0016043,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030154,GO:0031297,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033186,GO:0033260,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034728,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045005,GO:0045747,GO:0046483,GO:0048229,GO:0048366,GO:0048367,GO:0048507,GO:0048518,GO:0048522,GO:0048532,GO:0048583,GO:0048584,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051276,GO:0051716,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070827,GO:0070828,GO:0070829,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090558,GO:0098687,GO:0099402,GO:1901360,GO:1901576,GO:1902298,GO:1902969,GO:1903047,GO:1990426,GO:1990505 |
| Evalue | 5.59e-61 |
| EggNOG OGs | KOG1009@1|root,KOG1009@2759|Eukaryota |
| Description | nucleosome assembly |
| COG category | T |
| BRITE | ko00000,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil558.t1 ID=Gchil558.t1|Name=Gchil558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp MYAKAIEIAWHEDSSIWSLHLSCANRLVTAGGDKVARVWKLHPQPHIFFN SANNIIQPSPSATSQPLVDWLCDLRAHTTTVNVARFTQDGYTIATGADQG EIVLWTLEEQRGDALSGLMENGKERWIRSATLRAHVQDVLDLAWSRDGTK LVSASVDNAIMIWDVKNPTKSPVTLRNHANFVQGISIDPFSRLIASLGND RTMRVFTSNATNWYQVAYLSNVHDRKLFMDDARFKNCFRRLGWSPDGSVV ACPSGVHLPVTKRQFAVHIFARNQWLQPTAQCGGLTKPAVAVRFSPILYE LRYFPHPSSESEGSGSTYPFAKFTYRMIFAVLCVDRVLFYDTQNFQRPFA SVKGIHVAENTDLTWSSDGHTVAVSSADGYVGLICFTTQELGQKLSMQNT PPWLHRREDMVPAMQSPSKSAHATKVTVVQAQPSRALDKISRKSTDSSNS CGPPSTGSASNDIEIVAHPKAGVPTVHQPQSHQAHTAIATKSTTSGQGYR IALTRPTDTAQPRSNIFKENGVVDLTQTEHQEPPIEKHREKATMKSHQDI PNPKAQPFKSSTTKTFEPIHPPVPLTSKSLARDVEVNDIPNVRNPLTKAS VGDEKSAIEKPSLRPTGVLKEGVVALEGKTVGKCVVANGIDKEESAEPQS PVKHNSSIRDKPSQRASPSQICKRRLKTKQVQTTLLAFHNPASVPPKSRC TTEPAAKSNGSTSPGPSKKRLLADRPDQSYRPNSASDIDPSCFTGSSEQR KRRKPDPLAVCEMSTEK* back to topspliced messenger RNA >Gchil558.t1 ID=Gchil558.t1|Name=Gchil558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00004380_pilon:146149..148452+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTACGCCAAGGCCATCGAAATAGCATGGCACGAGGACTCATCCATATG GTCCCTCCATCTCTCATGTGCCAATCGCCTTGTCACAGCCGGCGGCGATA AAGTAGCGCGCGTTTGGAAACTTCACCCCCAGCCTCACATCTTCTTCAAC AGCGCCAATAACATCATTCAACCCTCACCCTCCGCCACAAGCCAGCCGTT AGTGGACTGGCTCTGTGATCTTCGAGCACACACCACAACCGTGAACGTGG CACGTTTCACACAGGATGGATATACGATTGCAACAGGCGCTGATCAAGGT GAAATCGTCCTTTGGACATTAGAAGAACAACGAGGGGATGCACTGAGTGG TCTGATGGAAAATGGAAAAGAAAGATGGATACGTTCTGCAACTCTTCGTG CACACGTGCAAGACGTTCTTGATTTGGCTTGGTCACGAGATGGAACAAAG CTGGTCTCGGCAAGTGTTGACAATGCTATTATGATTTGGGATGTAAAAAA TCCAACAAAATCCCCTGTTACGCTTCGTAACCACGCCAACTTCGTTCAAG GAATATCCATTGATCCATTTTCTCGTCTTATTGCCTCGTTAGGTAATGAT AGAACAATGCGTGTGTTCACCTCCAATGCTACAAATTGGTATCAAGTTGC ATATCTTTCGAATGTACACGATAGGAAACTGTTTATGGATGACGCGCGTT TCAAGAATTGCTTTCGAAGACTGGGATGGTCGCCAGATGGAAGTGTCGTC GCATGTCCCTCTGGAGTGCATCTCCCCGTTACAAAACGCCAGTTCGCTGT TCATATCTTCGCTAGAAATCAATGGTTACAACCGACAGCGCAGTGCGGCG GTCTCACAAAACCAGCTGTTGCTGTAAGATTCAGTCCTATACTTTACGAA CTTCGATACTTTCCACATCCTTCAAGTGAGAGCGAAGGTTCGGGTTCTAC CTATCCGTTTGCAAAGTTCACGTACCGCATGATCTTTGCGGTCCTTTGCG TGGACCGGGTTCTCTTCTACGACACGCAAAACTTCCAGCGACCATTCGCG AGTGTGAAGGGTATTCACGTTGCCGAAAATACTGATCTGACTTGGAGCAG TGATGGTCACACCGTGGCTGTGAGCTCCGCAGACGGGTATGTCGGATTGA TATGTTTCACAACACAAGAATTGGGTCAGAAGCTCTCAATGCAGAATACA CCACCTTGGTTACATAGGCGCGAAGATATGGTACCTGCTATGCAATCCCC GTCAAAGTCTGCACATGCGACGAAAGTAACGGTCGTTCAAGCCCAACCTT CACGGGCGTTGGACAAGATATCCAGGAAAAGCACTGATTCATCAAATAGT TGTGGTCCGCCCTCGACGGGGTCGGCTTCCAATGACATCGAAATTGTTGC TCACCCTAAAGCTGGGGTGCCTACCGTGCATCAGCCCCAGTCCCACCAAG CACATACAGCTATAGCGACTAAGAGCACCACGAGCGGTCAAGGTTACAGG ATTGCCCTAACAAGACCTACAGACACTGCTCAACCTCGTTCGAATATTTT TAAGGAGAATGGTGTCGTTGACCTTACACAAACCGAGCATCAAGAACCAC CTATTGAGAAACACCGAGAAAAAGCTACAATGAAGTCGCATCAAGACATT CCCAATCCTAAGGCTCAACCTTTCAAGTCTTCGACAACAAAAACATTTGA GCCTATTCATCCCCCCGTTCCTTTGACGTCTAAAAGTTTGGCCCGAGACG TAGAAGTGAATGATATACCCAACGTTCGGAATCCGTTGACCAAAGCCAGT GTTGGTGATGAGAAAAGTGCCATCGAAAAGCCCAGCCTGCGTCCAACTGG GGTTTTGAAAGAAGGGGTTGTTGCGCTAGAAGGCAAAACAGTTGGAAAAT GTGTCGTTGCGAATGGCATTGATAAGGAAGAAAGCGCTGAGCCTCAGAGC CCAGTGAAACATAATAGTAGTATCAGGGACAAGCCATCTCAACGAGCGTC ACCATCTCAGATATGTAAGCGTCGCTTGAAAACAAAACAAGTGCAAACAA CCCTTCTCGCGTTCCATAATCCTGCATCTGTGCCACCAAAGTCGAGGTGC ACTACTGAGCCTGCTGCTAAAAGCAACGGTTCAACGAGCCCTGGTCCCTC TAAAAAACGGTTGCTGGCCGACAGGCCAGACCAGAGTTACAGACCAAATT CTGCTTCAGATATAGACCCCAGCTGCTTCACAGGTAGTAGCGAACAACGG AAACGTCGAAAGCCAGACCCTTTAGCTGTTTGTGAAATGTCGACCGAGAA GTGA back to topprotein sequence of Gchil558.t1 >Gchil558.t1 ID=Gchil558.t1|Name=Gchil558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=768bp
MYAKAIEIAWHEDSSIWSLHLSCANRLVTAGGDKVARVWKLHPQPHIFFN SANNIIQPSPSATSQPLVDWLCDLRAHTTTVNVARFTQDGYTIATGADQG EIVLWTLEEQRGDALSGLMENGKERWIRSATLRAHVQDVLDLAWSRDGTK LVSASVDNAIMIWDVKNPTKSPVTLRNHANFVQGISIDPFSRLIASLGND RTMRVFTSNATNWYQVAYLSNVHDRKLFMDDARFKNCFRRLGWSPDGSVV ACPSGVHLPVTKRQFAVHIFARNQWLQPTAQCGGLTKPAVAVRFSPILYE LRYFPHPSSESEGSGSTYPFAKFTYRMIFAVLCVDRVLFYDTQNFQRPFA SVKGIHVAENTDLTWSSDGHTVAVSSADGYVGLICFTTQELGQKLSMQNT PPWLHRREDMVPAMQSPSKSAHATKVTVVQAQPSRALDKISRKSTDSSNS CGPPSTGSASNDIEIVAHPKAGVPTVHQPQSHQAHTAIATKSTTSGQGYR IALTRPTDTAQPRSNIFKENGVVDLTQTEHQEPPIEKHREKATMKSHQDI PNPKAQPFKSSTTKTFEPIHPPVPLTSKSLARDVEVNDIPNVRNPLTKAS VGDEKSAIEKPSLRPTGVLKEGVVALEGKTVGKCVVANGIDKEESAEPQS PVKHNSSIRDKPSQRASPSQICKRRLKTKQVQTTLLAFHNPASVPPKSRC TTEPAAKSNGSTSPGPSKKRLLADRPDQSYRPNSASDIDPSCFTGSSEQR KRRKPDPLAVCEMSTEK* back to topmRNA from alignment at tig00004380_pilon:146149..148452+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil558.t1 ID=Gchil558.t1|Name=Gchil558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00004380_pilon:146149..148452+ (Gracilaria chilensis NLEC103_M9 male) ATGTACGCCAAGGCCATCGAAATAGCATGGCACGAGGACTCATCCATATG
GTCCCTCCATCTCTCATGTGCCAATCGCCTTGTCACAGCCGGCGGCGATA
AAGTAGCGCGCGTTTGGAAACTTCACCCCCAGCCTCACATCTTCTTCAAC
AGCGCCAATAACATCATTCAACCCTCACCCTCCGCCACAAGCCAGCCGTT
AGTGGACTGGCTCTGTGATCTTCGAGCACACACCACAACCGTGAACGTGG
CACGTTTCACACAGGATGGATATACGATTGCAACAGGCGCTGATCAAGGT
GAAATCGTCCTTTGGACATTAGAAGAACAACGAGGGGATGCACTGAGTGG
TCTGATGGAAAATGGAAAAGAAAGATGGATACGTTCTGCAACTCTTCGTG
CACACGTGCAAGACGTTCTTGATTTGGCTTGGTCACGAGATGGAACAAAG
CTGGTCTCGGCAAGTGTTGACAATGCTATTATGATTTGGGATGTAAAAAA
TCCAACAAAATCCCCTGTTACGCTTCGTAACCACGCCAACTTCGTTCAAG
GAATATCCATTGATCCATTTTCTCGTCTTATTGCCTCGTTAGGTAATGAT
AGAACAATGCGTGTGTTCACCTCCAATGCTACAAATTGGTATCAAGTTGC
ATATCTTTCGAATGTACACGATAGGAAACTGTTTATGGATGACGCGCGTT
TCAAGAATTGCTTTCGAAGACTGGGATGGTCGCCAGATGGAAGTGTCGTC
GCATGTCCCTCTGGAGTGCATCTCCCCGTTACAAAACGCCAGTTCGCTGT
TCATATCTTCGCTAGAAATCAATGGTTACAACCGACAGCGCAGTGCGGCG
GTCTCACAAAACCAGCTGTTGCTGTAAGATTCAGTCCTATACTTTACGAA
CTTCGATACTTTCCACATCCTTCAAGTGAGAGCGAAGGTTCGGGTTCTAC
CTATCCGTTTGCAAAGTTCACGTACCGCATGATCTTTGCGGTCCTTTGCG
TGGACCGGGTTCTCTTCTACGACACGCAAAACTTCCAGCGACCATTCGCG
AGTGTGAAGGGTATTCACGTTGCCGAAAATACTGATCTGACTTGGAGCAG
TGATGGTCACACCGTGGCTGTGAGCTCCGCAGACGGGTATGTCGGATTGA
TATGTTTCACAACACAAGAATTGGGTCAGAAGCTCTCAATGCAGAATACA
CCACCTTGGTTACATAGGCGCGAAGATATGGTACCTGCTATGCAATCCCC
GTCAAAGTCTGCACATGCGACGAAAGTAACGGTCGTTCAAGCCCAACCTT
CACGGGCGTTGGACAAGATATCCAGGAAAAGCACTGATTCATCAAATAGT
TGTGGTCCGCCCTCGACGGGGTCGGCTTCCAATGACATCGAAATTGTTGC
TCACCCTAAAGCTGGGGTGCCTACCGTGCATCAGCCCCAGTCCCACCAAG
CACATACAGCTATAGCGACTAAGAGCACCACGAGCGGTCAAGGTTACAGG
ATTGCCCTAACAAGACCTACAGACACTGCTCAACCTCGTTCGAATATTTT
TAAGGAGAATGGTGTCGTTGACCTTACACAAACCGAGCATCAAGAACCAC
CTATTGAGAAACACCGAGAAAAAGCTACAATGAAGTCGCATCAAGACATT
CCCAATCCTAAGGCTCAACCTTTCAAGTCTTCGACAACAAAAACATTTGA
GCCTATTCATCCCCCCGTTCCTTTGACGTCTAAAAGTTTGGCCCGAGACG
TAGAAGTGAATGATATACCCAACGTTCGGAATCCGTTGACCAAAGCCAGT
GTTGGTGATGAGAAAAGTGCCATCGAAAAGCCCAGCCTGCGTCCAACTGG
GGTTTTGAAAGAAGGGGTTGTTGCGCTAGAAGGCAAAACAGTTGGAAAAT
GTGTCGTTGCGAATGGCATTGATAAGGAAGAAAGCGCTGAGCCTCAGAGC
CCAGTGAAACATAATAGTAGTATCAGGGACAAGCCATCTCAACGAGCGTC
ACCATCTCAGATATGTAAGCGTCGCTTGAAAACAAAACAAGTGCAAACAA
CCCTTCTCGCGTTCCATAATCCTGCATCTGTGCCACCAAAGTCGAGGTGC
ACTACTGAGCCTGCTGCTAAAAGCAACGGTTCAACGAGCCCTGGTCCCTC
TAAAAAACGGTTGCTGGCCGACAGGCCAGACCAGAGTTACAGACCAAATT
CTGCTTCAGATATAGACCCCAGCTGCTTCACAGGTAGTAGCGAACAACGG
AAACGTCGAAAGCCAGACCCTTTAGCTGTTTGTGAAATGTCGACCGAGAA
GTGA back to topCoding sequence (CDS) from alignment at tig00004380_pilon:146149..148452+ >Gchil558.t1 ID=Gchil558.t1|Name=Gchil558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2304bp|location=Sequence derived from alignment at tig00004380_pilon:146149..148452+ (Gracilaria chilensis NLEC103_M9 male) ATGTACGCCAAGGCCATCGAAATAGCATGGCACGAGGACTCATCCATATG GTCCCTCCATCTCTCATGTGCCAATCGCCTTGTCACAGCCGGCGGCGATA AAGTAGCGCGCGTTTGGAAACTTCACCCCCAGCCTCACATCTTCTTCAAC AGCGCCAATAACATCATTCAACCCTCACCCTCCGCCACAAGCCAGCCGTT AGTGGACTGGCTCTGTGATCTTCGAGCACACACCACAACCGTGAACGTGG CACGTTTCACACAGGATGGATATACGATTGCAACAGGCGCTGATCAAGGT GAAATCGTCCTTTGGACATTAGAAGAACAACGAGGGGATGCACTGAGTGG TCTGATGGAAAATGGAAAAGAAAGATGGATACGTTCTGCAACTCTTCGTG CACACGTGCAAGACGTTCTTGATTTGGCTTGGTCACGAGATGGAACAAAG CTGGTCTCGGCAAGTGTTGACAATGCTATTATGATTTGGGATGTAAAAAA TCCAACAAAATCCCCTGTTACGCTTCGTAACCACGCCAACTTCGTTCAAG GAATATCCATTGATCCATTTTCTCGTCTTATTGCCTCGTTAGGTAATGAT AGAACAATGCGTGTGTTCACCTCCAATGCTACAAATTGGTATCAAGTTGC ATATCTTTCGAATGTACACGATAGGAAACTGTTTATGGATGACGCGCGTT TCAAGAATTGCTTTCGAAGACTGGGATGGTCGCCAGATGGAAGTGTCGTC GCATGTCCCTCTGGAGTGCATCTCCCCGTTACAAAACGCCAGTTCGCTGT TCATATCTTCGCTAGAAATCAATGGTTACAACCGACAGCGCAGTGCGGCG GTCTCACAAAACCAGCTGTTGCTGTAAGATTCAGTCCTATACTTTACGAA CTTCGATACTTTCCACATCCTTCAAGTGAGAGCGAAGGTTCGGGTTCTAC CTATCCGTTTGCAAAGTTCACGTACCGCATGATCTTTGCGGTCCTTTGCG TGGACCGGGTTCTCTTCTACGACACGCAAAACTTCCAGCGACCATTCGCG AGTGTGAAGGGTATTCACGTTGCCGAAAATACTGATCTGACTTGGAGCAG TGATGGTCACACCGTGGCTGTGAGCTCCGCAGACGGGTATGTCGGATTGA TATGTTTCACAACACAAGAATTGGGTCAGAAGCTCTCAATGCAGAATACA CCACCTTGGTTACATAGGCGCGAAGATATGGTACCTGCTATGCAATCCCC GTCAAAGTCTGCACATGCGACGAAAGTAACGGTCGTTCAAGCCCAACCTT CACGGGCGTTGGACAAGATATCCAGGAAAAGCACTGATTCATCAAATAGT TGTGGTCCGCCCTCGACGGGGTCGGCTTCCAATGACATCGAAATTGTTGC TCACCCTAAAGCTGGGGTGCCTACCGTGCATCAGCCCCAGTCCCACCAAG CACATACAGCTATAGCGACTAAGAGCACCACGAGCGGTCAAGGTTACAGG ATTGCCCTAACAAGACCTACAGACACTGCTCAACCTCGTTCGAATATTTT TAAGGAGAATGGTGTCGTTGACCTTACACAAACCGAGCATCAAGAACCAC CTATTGAGAAACACCGAGAAAAAGCTACAATGAAGTCGCATCAAGACATT CCCAATCCTAAGGCTCAACCTTTCAAGTCTTCGACAACAAAAACATTTGA GCCTATTCATCCCCCCGTTCCTTTGACGTCTAAAAGTTTGGCCCGAGACG TAGAAGTGAATGATATACCCAACGTTCGGAATCCGTTGACCAAAGCCAGT GTTGGTGATGAGAAAAGTGCCATCGAAAAGCCCAGCCTGCGTCCAACTGG GGTTTTGAAAGAAGGGGTTGTTGCGCTAGAAGGCAAAACAGTTGGAAAAT GTGTCGTTGCGAATGGCATTGATAAGGAAGAAAGCGCTGAGCCTCAGAGC CCAGTGAAACATAATAGTAGTATCAGGGACAAGCCATCTCAACGAGCGTC ACCATCTCAGATATGTAAGCGTCGCTTGAAAACAAAACAAGTGCAAACAA CCCTTCTCGCGTTCCATAATCCTGCATCTGTGCCACCAAAGTCGAGGTGC ACTACTGAGCCTGCTGCTAAAAGCAACGGTTCAACGAGCCCTGGTCCCTC TAAAAAACGGTTGCTGGCCGACAGGCCAGACCAGAGTTACAGACCAAATT CTGCTTCAGATATAGACCCCAGCTGCTTCACAGGTAGTAGCGAACAACGG AAACGTCGAAAGCCAGACCCTTTAGCTGTTTGTGAAATGTCGACCGAGAA GTGA back to top
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