Gchil5574.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5574.t1
Unique NameGchil5574.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2507858..2508926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705863.1
PFAMsIP_trans
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008150,GO:0008526,GO:0010876,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0033036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0071702,GO:0071944
Evalue7.43e-109
EggNOG OGsCOG5083@1|root,KOG3668@2759|Eukaryota
Descriptionphosphatidylinositol transporter activity
COG categoryF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5574Gchil5574Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2507858..2508926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5574.t1Gchil5574.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2507858..2508926 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5574.t1.start1Gchil5574.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2507858..2507860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5574.t1.CDS1Gchil5574.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2507858..2507906 +
Gchil5574.t1.CDS2Gchil5574.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2508027..2508174 +
Gchil5574.t1.CDS3Gchil5574.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2508269..2508926 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5574.t1.exon1Gchil5574.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2507858..2507906 +
Gchil5574.t1.exon2Gchil5574.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2508027..2508174 +
Gchil5574.t1.exon3Gchil5574.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2508269..2508926 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5574.t1.intron1Gchil5574.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2507907..2508026 +
Gchil5574.t1.intron2Gchil5574.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2508175..2508268 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5574.t1.stop1Gchil5574.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2508924..2508926 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5574.t1 ID=Gchil5574.t1|Name=Gchil5574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=285bp
MIIKEYRISMPITAAEYYIAQLYMVAKSSQEETGKTAGEGIEIVRNEAFD
ENSPVNIHKMPPGQYTEKIMHLRSRLPKFVAMVLPVSMTEIVEKSWNSFP
WCKTEYSNPFFGEKFYMSVETMHADDRGTQENAVNLPAEDLAKRKVDYLN
IACEDPSVPMEKGEDPTKFLSEKTGRGNLSSTFMEDHDPIMTCYKVVKLR
FKVFGLQSKAEQWGHLYGIRNPFLQYHRKIFCWIDEWYGMSIADIRAIED
KTAEITKQILEASRTQQKPQTERKSHGWMRSTAS*
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spliced messenger RNA

>Gchil5574.t1 ID=Gchil5574.t1|Name=Gchil5574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00004418_pilon:2507858..2508926+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATTAAGGAATACCGCATCTCGATGCCCATAACTGCAGCCGAGTA
TTACATTGCGCAGTTGTATATGGTGGCAAAATCCAGTCAGGAAGAGACTG
GAAAGACTGCTGGAGAGGGCATTGAAATCGTTCGAAATGAAGCCTTCGAT
GAAAACTCTCCAGTTAATATTCATAAAATGCCCCCCGGACAGTATACCGA
AAAGATCATGCATCTCAGGAGCAGGTTGCCTAAGTTTGTCGCCATGGTTC
TGCCGGTCTCTATGACAGAAATAGTCGAAAAGTCCTGGAATTCTTTTCCG
TGGTGCAAGACTGAGTATAGTAACCCGTTTTTTGGCGAGAAGTTTTACAT
GTCTGTTGAGACAATGCACGCTGATGACAGAGGCACACAGGAGAATGCCG
TCAATCTCCCCGCAGAGGATCTCGCCAAGCGCAAGGTCGACTACTTGAAC
ATTGCTTGTGAGGACCCATCGGTCCCCATGGAAAAGGGTGAAGACCCTAC
CAAATTCCTCTCCGAAAAGACTGGACGCGGAAATCTCAGCAGTACTTTTA
TGGAGGATCATGATCCGATTATGACTTGCTATAAGGTCGTCAAACTTCGC
TTTAAGGTTTTCGGCCTGCAGTCCAAGGCTGAGCAGTGGGGTCATTTGTA
CGGTATTCGAAACCCTTTTTTGCAGTATCACCGAAAGATCTTTTGTTGGA
TTGATGAATGGTACGGTATGTCAATTGCAGATATTCGTGCTATTGAAGAT
AAAACTGCTGAGATTACCAAGCAGATACTTGAGGCTTCGCGTACGCAACA
GAAGCCTCAGACGGAACGAAAGAGTCATGGGTGGATGCGGTCCACAGCAT
CATGA
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protein sequence of Gchil5574.t1

>Gchil5574.t1 ID=Gchil5574.t1|Name=Gchil5574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=285bp
MIIKEYRISMPITAAEYYIAQLYMVAKSSQEETGKTAGEGIEIVRNEAFD
ENSPVNIHKMPPGQYTEKIMHLRSRLPKFVAMVLPVSMTEIVEKSWNSFP
WCKTEYSNPFFGEKFYMSVETMHADDRGTQENAVNLPAEDLAKRKVDYLN
IACEDPSVPMEKGEDPTKFLSEKTGRGNLSSTFMEDHDPIMTCYKVVKLR
FKVFGLQSKAEQWGHLYGIRNPFLQYHRKIFCWIDEWYGMSIADIRAIED
KTAEITKQILEASRTQQKPQTERKSHGWMRSTAS*
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mRNA from alignment at tig00004418_pilon:2507858..2508926+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5574.t1 ID=Gchil5574.t1|Name=Gchil5574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1069bp|location=Sequence derived from alignment at tig00004418_pilon:2507858..2508926+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTATTAAGGAATACCGCATCTCGATGCCCATAACTGCAGCCGAGTG
TAAGTATCCCCTAGAAACCCATCACCTGTACATGCTTTGTTCCATCCGCT
ATTGGTGCTGACTTTGCGTCGCTTTTCTGTTGCTTTTCTGTGTCCTTTGC
GGTCGCTATGTTGTATTAGATTACATTGCGCAGTTGTATATGGTGGCAAA
ATCCAGTCAGGAAGAGACTGGAAAGACTGCTGGAGAGGGCATTGAAATCG
TTCGAAATGAAGCCTTCGATGAAAACTCTCCAGTTAATATTCATAAAATG
CCCCCCGGACAGTATACGTACGTCAAGTCAAACACCTGTGCATTCTCTTT
CACGCGGTAGCTCTTTGTGTTTCATCATGCTTACCGGTCTTCGCATTTAT
CCGTTTCGAAGCGAAAAGATCATGCATCTCAGGAGCAGGTTGCCTAAGTT
TGTCGCCATGGTTCTGCCGGTCTCTATGACAGAAATAGTCGAAAAGTCCT
GGAATTCTTTTCCGTGGTGCAAGACTGAGTATAGTAACCCGTTTTTTGGC
GAGAAGTTTTACATGTCTGTTGAGACAATGCACGCTGATGACAGAGGCAC
ACAGGAGAATGCCGTCAATCTCCCCGCAGAGGATCTCGCCAAGCGCAAGG
TCGACTACTTGAACATTGCTTGTGAGGACCCATCGGTCCCCATGGAAAAG
GGTGAAGACCCTACCAAATTCCTCTCCGAAAAGACTGGACGCGGAAATCT
CAGCAGTACTTTTATGGAGGATCATGATCCGATTATGACTTGCTATAAGG
TCGTCAAACTTCGCTTTAAGGTTTTCGGCCTGCAGTCCAAGGCTGAGCAG
TGGGGTCATTTGTACGGTATTCGAAACCCTTTTTTGCAGTATCACCGAAA
GATCTTTTGTTGGATTGATGAATGGTACGGTATGTCAATTGCAGATATTC
GTGCTATTGAAGATAAAACTGCTGAGATTACCAAGCAGATACTTGAGGCT
TCGCGTACGCAACAGAAGCCTCAGACGGAACGAAAGAGTCATGGGTGGAT
GCGGTCCACAGCATCATGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2507858..2508926+

>Gchil5574.t1 ID=Gchil5574.t1|Name=Gchil5574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=855bp|location=Sequence derived from alignment at tig00004418_pilon:2507858..2508926+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTATTAAGGAATACCGCATCTCGATGCCCATAACTGCAGCCGAGTA
TTACATTGCGCAGTTGTATATGGTGGCAAAATCCAGTCAGGAAGAGACTG
GAAAGACTGCTGGAGAGGGCATTGAAATCGTTCGAAATGAAGCCTTCGAT
GAAAACTCTCCAGTTAATATTCATAAAATGCCCCCCGGACAGTATACCGA
AAAGATCATGCATCTCAGGAGCAGGTTGCCTAAGTTTGTCGCCATGGTTC
TGCCGGTCTCTATGACAGAAATAGTCGAAAAGTCCTGGAATTCTTTTCCG
TGGTGCAAGACTGAGTATAGTAACCCGTTTTTTGGCGAGAAGTTTTACAT
GTCTGTTGAGACAATGCACGCTGATGACAGAGGCACACAGGAGAATGCCG
TCAATCTCCCCGCAGAGGATCTCGCCAAGCGCAAGGTCGACTACTTGAAC
ATTGCTTGTGAGGACCCATCGGTCCCCATGGAAAAGGGTGAAGACCCTAC
CAAATTCCTCTCCGAAAAGACTGGACGCGGAAATCTCAGCAGTACTTTTA
TGGAGGATCATGATCCGATTATGACTTGCTATAAGGTCGTCAAACTTCGC
TTTAAGGTTTTCGGCCTGCAGTCCAAGGCTGAGCAGTGGGGTCATTTGTA
CGGTATTCGAAACCCTTTTTTGCAGTATCACCGAAAGATCTTTTGTTGGA
TTGATGAATGGTACGGTATGTCAATTGCAGATATTCGTGCTATTGAAGAT
AAAACTGCTGAGATTACCAAGCAGATACTTGAGGCTTCGCGTACGCAACA
GAAGCCTCAGACGGAACGAAAGAGTCATGGGTGGATGCGGTCCACAGCAT
CATGA
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