Gchil557.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil557.t1
Unique NameGchil557.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:142950..144448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil557Gchil557Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 142950..144448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil557.t1Gchil557.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 142950..144448 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil557.t1.stop1Gchil557.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 142950..142952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil557.t1.CDS1Gchil557.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 142950..143684 -
Gchil557.t1.CDS2Gchil557.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 144428..144448 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil557.t1.exon1Gchil557.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 142950..143684 -
Gchil557.t1.exon2Gchil557.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 144428..144448 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil557.t1.intron1Gchil557.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 143685..144427 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil557.t1.start1Gchil557.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 144446..144448 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil557.t1 ID=Gchil557.t1|Name=Gchil557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MYVDDVPPSACHQPLLLSRALVLIAHSPSFVMNPSHLVLPLLFAILFTLP
TAETQPVQPTSHLKQPCVSIQTVDIQQNHTRSDPREDSIILSCIMIQATT
AYVRTGNYSITENTVSCSSKVAYSYSFLAPQILSTKGATHFCVQGRSSNQ
YASSFCAFSKAEGNKVFISAAVPEQQVNTVKHLPFLATTVNYNFGNLLPM
FAYRAATAFSRSVTDPGELRRRIFTGTGFYPSCTLYPSNRPSNSPCTSIN
L*
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spliced messenger RNA

>Gchil557.t1 ID=Gchil557.t1|Name=Gchil557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004380_pilon:142950..144448- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGTCGATGACGTGCCGCCTTCAGCTTGTCACCAACCTTTGTTACT
GAGTCGTGCACTCGTCCTCATTGCTCATTCTCCTTCCTTCGTCATGAATC
CGTCACATCTTGTTCTCCCTCTTTTGTTCGCCATCCTCTTCACATTACCC
ACAGCCGAGACACAACCTGTGCAACCTACCTCTCATCTTAAGCAGCCGTG
CGTCTCCATTCAAACCGTTGATATTCAACAGAATCACACGAGGTCAGATC
CTCGGGAAGATTCTATAATTCTATCCTGTATCATGATTCAGGCAACCACC
GCTTACGTTCGAACTGGGAACTACAGCATCACCGAGAACACTGTCTCTTG
TTCCTCTAAAGTGGCCTACTCGTATTCTTTTCTGGCGCCGCAAATACTCT
CCACGAAAGGAGCCACGCACTTTTGTGTTCAAGGGAGAAGTTCCAATCAG
TACGCATCGTCGTTCTGTGCTTTCTCAAAGGCTGAAGGCAACAAGGTATT
CATTTCGGCCGCTGTTCCAGAACAACAGGTCAACACTGTGAAGCATTTAC
CGTTCTTAGCAACAACCGTCAACTACAACTTTGGAAATCTGTTACCAATG
TTTGCGTATCGAGCAGCAACGGCTTTTAGTCGCTCTGTTACAGATCCAGG
AGAGCTTCGACGCCGAATCTTTACTGGAACTGGTTTTTATCCTTCTTGTA
CACTTTACCCATCTAATCGACCAAGCAACAGTCCATGTACCTCCATCAAT
TTGTAA
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protein sequence of Gchil557.t1

>Gchil557.t1 ID=Gchil557.t1|Name=Gchil557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MYVDDVPPSACHQPLLLSRALVLIAHSPSFVMNPSHLVLPLLFAILFTLP
TAETQPVQPTSHLKQPCVSIQTVDIQQNHTRSDPREDSIILSCIMIQATT
AYVRTGNYSITENTVSCSSKVAYSYSFLAPQILSTKGATHFCVQGRSSNQ
YASSFCAFSKAEGNKVFISAAVPEQQVNTVKHLPFLATTVNYNFGNLLPM
FAYRAATAFSRSVTDPGELRRRIFTGTGFYPSCTLYPSNRPSNSPCTSIN
L*
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mRNA from alignment at tig00004380_pilon:142950..144448-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil557.t1 ID=Gchil557.t1|Name=Gchil557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1499bp|location=Sequence derived from alignment at tig00004380_pilon:142950..144448- (Gracilaria chilensis NLEC103_M9 male)
ATGTACGTCGATGACGTGCCGGTACGTAAAGGCTCAGTTGTGCGTTTTGT
TGAAGCATTTGCTAATACTGTTCGACAAAAACAAAACGTCGTGAGTCTCT
TTCGCAGCGAAACCTTCGCTTATGCCATCACACAAGGCTCCTGCTAGCTA
GTGTATAGCTAGGCGTTTAGCGTAATCTACCGGTGGATTACTGTAAAGGT
TCTGTGAGGTAGGCAACAAGGGTGGCAGCGACGCATGGTGATTAACGTCA
CGTAAGCTGAGCGCGCGCTGTTTGCAACAACGCAGTTGCGTTTGTGAACA
GGTGGATGTTAATTTAGAGGAGATTTATGTTATCATCAAGTGCGCATCGG
CAACGCGTTGACGTGCTGGGACTTCAACCTCGTGGCCGTCGGGGATCACC
GACAACCATGGCGAGATCATACGAGCTGCCACTTTCATACCACACATAGA
GTGCGCGGCAACAACTCAACGCTTGTGTGTTTACCAGACACAGTGCTCCA
TCAACTCACGCCACGCGAAATACATTTGCACCAGTGGAGTGTAATCGCCG
CGGATCAGCACAAATTCTTGAAAAAGGTGTCGCATCATGTGAGGTGTAGC
TGAATCCTTGCTGTCGGCATCGCTACATCCTTCCCTCGCGAAAGGATAGT
GGCAGCTCATCATTTCGCGCACTGGCGCCCATCTTCTGTGTCCAGCTCAA
ACTCTCAGGAGCTGACTCTGTTATAAAGCGACAGCCCTTACTCATCCCGT
AACGACTAACACAGCCTTCAGCTTGTCACCAACCTTTGTTACTGAGTCGT
GCACTCGTCCTCATTGCTCATTCTCCTTCCTTCGTCATGAATCCGTCACA
TCTTGTTCTCCCTCTTTTGTTCGCCATCCTCTTCACATTACCCACAGCCG
AGACACAACCTGTGCAACCTACCTCTCATCTTAAGCAGCCGTGCGTCTCC
ATTCAAACCGTTGATATTCAACAGAATCACACGAGGTCAGATCCTCGGGA
AGATTCTATAATTCTATCCTGTATCATGATTCAGGCAACCACCGCTTACG
TTCGAACTGGGAACTACAGCATCACCGAGAACACTGTCTCTTGTTCCTCT
AAAGTGGCCTACTCGTATTCTTTTCTGGCGCCGCAAATACTCTCCACGAA
AGGAGCCACGCACTTTTGTGTTCAAGGGAGAAGTTCCAATCAGTACGCAT
CGTCGTTCTGTGCTTTCTCAAAGGCTGAAGGCAACAAGGTATTCATTTCG
GCCGCTGTTCCAGAACAACAGGTCAACACTGTGAAGCATTTACCGTTCTT
AGCAACAACCGTCAACTACAACTTTGGAAATCTGTTACCAATGTTTGCGT
ATCGAGCAGCAACGGCTTTTAGTCGCTCTGTTACAGATCCAGGAGAGCTT
CGACGCCGAATCTTTACTGGAACTGGTTTTTATCCTTCTTGTACACTTTA
CCCATCTAATCGACCAAGCAACAGTCCATGTACCTCCATCAATTTGTAA
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Coding sequence (CDS) from alignment at tig00004380_pilon:142950..144448-

>Gchil557.t1 ID=Gchil557.t1|Name=Gchil557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00004380_pilon:142950..144448- (Gracilaria chilensis NLEC103_M9 male)
ATGTACGTCGATGACGTGCCGCCTTCAGCTTGTCACCAACCTTTGTTACT
GAGTCGTGCACTCGTCCTCATTGCTCATTCTCCTTCCTTCGTCATGAATC
CGTCACATCTTGTTCTCCCTCTTTTGTTCGCCATCCTCTTCACATTACCC
ACAGCCGAGACACAACCTGTGCAACCTACCTCTCATCTTAAGCAGCCGTG
CGTCTCCATTCAAACCGTTGATATTCAACAGAATCACACGAGGTCAGATC
CTCGGGAAGATTCTATAATTCTATCCTGTATCATGATTCAGGCAACCACC
GCTTACGTTCGAACTGGGAACTACAGCATCACCGAGAACACTGTCTCTTG
TTCCTCTAAAGTGGCCTACTCGTATTCTTTTCTGGCGCCGCAAATACTCT
CCACGAAAGGAGCCACGCACTTTTGTGTTCAAGGGAGAAGTTCCAATCAG
TACGCATCGTCGTTCTGTGCTTTCTCAAAGGCTGAAGGCAACAAGGTATT
CATTTCGGCCGCTGTTCCAGAACAACAGGTCAACACTGTGAAGCATTTAC
CGTTCTTAGCAACAACCGTCAACTACAACTTTGGAAATCTGTTACCAATG
TTTGCGTATCGAGCAGCAACGGCTTTTAGTCGCTCTGTTACAGATCCAGG
AGAGCTTCGACGCCGAATCTTTACTGGAACTGGTTTTTATCCTTCTTGTA
CACTTTACCCATCTAATCGACCAAGCAACAGTCCATGTACCTCCATCAAT
TTGTAA
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