Gchil5565.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5565.t1
Unique NameGchil5565.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2429304..2430506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5565Gchil5565Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2429304..2430506 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5565.t1.stop1Gchil5565.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2429304..2429306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5565.t1.CDS1Gchil5565.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2429304..2430506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5565.t1.exon1Gchil5565.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2429304..2430506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5565.t1.start1Gchil5565.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2430504..2430506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5565.t1Gchil5565.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2429304..2430506 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5565.t1 ID=Gchil5565.t1|Name=Gchil5565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=401bp
MTEQPSAHPSSPVTTAVGVSASAQSAHDSIAPELPLHSLHILRALLESLS
ILTIKTVPFPSLHDDLQRASLRVTHLSAETLNTLRLFCSSAVKERYDIRV
VHDLLKDGLYPAAKSLLLASNSQHRRLAQVSNSLAMEYEQTANAVTECLT
RATHARAEQSSRQNERQAVVTSTFNQLTNTRRKAQGALRAFEEAEKLHDQ
AEQREAVARKRVVALQAAHVAAVVGGFVSARSTPFVIGAGSAAALASTFE
GEVMRAREERAVHLRQRNDARDRRSDLEVSVATLVTELRERKREEVLEST
VLDSLIDCATTLRRLAGVMLKAEAFWKGLSTGLQDRLLELVVAAEGREFD
DGMGERLLQVETFWEAVGSVCENASKGVDSGLNRDVVIEGRQIDRIEWDV
*
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spliced messenger RNA

>Gchil5565.t1 ID=Gchil5565.t1|Name=Gchil5565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004418_pilon:2429304..2430506- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAACAGCCCTCCGCTCATCCGTCTTCTCCTGTCACCACTGCCGT
TGGGGTCTCTGCGTCAGCTCAAAGTGCGCACGACTCCATCGCACCAGAGC
TTCCCCTGCATTCGCTGCATATCTTGCGCGCCTTGCTGGAAAGTCTTTCC
ATTCTCACCATCAAGACCGTGCCTTTTCCGTCACTCCATGATGACTTGCA
ACGCGCTAGCCTCCGTGTGACACATCTCTCAGCAGAGACATTGAACACTC
TGCGCCTGTTCTGCTCCTCTGCTGTGAAGGAACGTTACGATATTCGCGTC
GTGCATGATCTCTTGAAAGATGGTTTATATCCTGCCGCAAAATCTCTTCT
CTTAGCCTCCAACTCTCAGCACCGAAGACTTGCACAAGTTTCCAATTCAC
TTGCGATGGAATACGAACAGACTGCCAATGCTGTAACAGAATGCCTCACG
CGTGCGACACATGCGCGCGCCGAACAGAGTTCACGTCAAAATGAGCGTCA
GGCCGTAGTCACCAGCACGTTCAACCAACTCACCAACACCAGACGAAAAG
CACAGGGTGCTTTGCGCGCATTTGAAGAAGCCGAAAAGCTTCACGACCAA
GCTGAACAGAGGGAAGCCGTGGCGCGGAAAAGAGTGGTTGCTCTACAGGC
TGCGCATGTGGCTGCCGTGGTGGGAGGCTTTGTCAGCGCTAGGTCAACAC
CATTTGTAATTGGTGCTGGCTCCGCTGCTGCGTTGGCCTCTACGTTTGAG
GGTGAGGTCATGCGCGCGCGGGAGGAGCGTGCCGTACATCTCAGACAACG
CAACGATGCTCGTGATCGCCGTTCCGATTTGGAAGTTAGTGTGGCCACGC
TTGTCACTGAGTTGCGAGAGCGTAAGAGGGAAGAGGTTCTTGAAAGCACA
GTCTTGGATTCGCTTATCGACTGTGCAACCACATTGAGAAGACTGGCCGG
AGTAATGCTGAAAGCGGAGGCTTTCTGGAAGGGTTTGTCCACGGGGTTAC
AGGACCGTCTACTGGAACTAGTTGTGGCAGCGGAGGGACGCGAATTTGAC
GACGGTATGGGAGAAAGATTGTTGCAAGTGGAAACGTTCTGGGAAGCCGT
GGGATCAGTGTGCGAGAACGCTTCAAAAGGGGTGGACAGTGGGCTGAACC
GTGATGTAGTGATCGAAGGGCGTCAAATTGACAGAATTGAATGGGATGTT
TGA
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protein sequence of Gchil5565.t1

>Gchil5565.t1 ID=Gchil5565.t1|Name=Gchil5565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=401bp
MTEQPSAHPSSPVTTAVGVSASAQSAHDSIAPELPLHSLHILRALLESLS
ILTIKTVPFPSLHDDLQRASLRVTHLSAETLNTLRLFCSSAVKERYDIRV
VHDLLKDGLYPAAKSLLLASNSQHRRLAQVSNSLAMEYEQTANAVTECLT
RATHARAEQSSRQNERQAVVTSTFNQLTNTRRKAQGALRAFEEAEKLHDQ
AEQREAVARKRVVALQAAHVAAVVGGFVSARSTPFVIGAGSAAALASTFE
GEVMRAREERAVHLRQRNDARDRRSDLEVSVATLVTELRERKREEVLEST
VLDSLIDCATTLRRLAGVMLKAEAFWKGLSTGLQDRLLELVVAAEGREFD
DGMGERLLQVETFWEAVGSVCENASKGVDSGLNRDVVIEGRQIDRIEWDV
*
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mRNA from alignment at tig00004418_pilon:2429304..2430506-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5565.t1 ID=Gchil5565.t1|Name=Gchil5565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004418_pilon:2429304..2430506- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAACAGCCCTCCGCTCATCCGTCTTCTCCTGTCACCACTGCCGT
TGGGGTCTCTGCGTCAGCTCAAAGTGCGCACGACTCCATCGCACCAGAGC
TTCCCCTGCATTCGCTGCATATCTTGCGCGCCTTGCTGGAAAGTCTTTCC
ATTCTCACCATCAAGACCGTGCCTTTTCCGTCACTCCATGATGACTTGCA
ACGCGCTAGCCTCCGTGTGACACATCTCTCAGCAGAGACATTGAACACTC
TGCGCCTGTTCTGCTCCTCTGCTGTGAAGGAACGTTACGATATTCGCGTC
GTGCATGATCTCTTGAAAGATGGTTTATATCCTGCCGCAAAATCTCTTCT
CTTAGCCTCCAACTCTCAGCACCGAAGACTTGCACAAGTTTCCAATTCAC
TTGCGATGGAATACGAACAGACTGCCAATGCTGTAACAGAATGCCTCACG
CGTGCGACACATGCGCGCGCCGAACAGAGTTCACGTCAAAATGAGCGTCA
GGCCGTAGTCACCAGCACGTTCAACCAACTCACCAACACCAGACGAAAAG
CACAGGGTGCTTTGCGCGCATTTGAAGAAGCCGAAAAGCTTCACGACCAA
GCTGAACAGAGGGAAGCCGTGGCGCGGAAAAGAGTGGTTGCTCTACAGGC
TGCGCATGTGGCTGCCGTGGTGGGAGGCTTTGTCAGCGCTAGGTCAACAC
CATTTGTAATTGGTGCTGGCTCCGCTGCTGCGTTGGCCTCTACGTTTGAG
GGTGAGGTCATGCGCGCGCGGGAGGAGCGTGCCGTACATCTCAGACAACG
CAACGATGCTCGTGATCGCCGTTCCGATTTGGAAGTTAGTGTGGCCACGC
TTGTCACTGAGTTGCGAGAGCGTAAGAGGGAAGAGGTTCTTGAAAGCACA
GTCTTGGATTCGCTTATCGACTGTGCAACCACATTGAGAAGACTGGCCGG
AGTAATGCTGAAAGCGGAGGCTTTCTGGAAGGGTTTGTCCACGGGGTTAC
AGGACCGTCTACTGGAACTAGTTGTGGCAGCGGAGGGACGCGAATTTGAC
GACGGTATGGGAGAAAGATTGTTGCAAGTGGAAACGTTCTGGGAAGCCGT
GGGATCAGTGTGCGAGAACGCTTCAAAAGGGGTGGACAGTGGGCTGAACC
GTGATGTAGTGATCGAAGGGCGTCAAATTGACAGAATTGAATGGGATGTT
TGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2429304..2430506-

>Gchil5565.t1 ID=Gchil5565.t1|Name=Gchil5565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00004418_pilon:2429304..2430506- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAACAGCCCTCCGCTCATCCGTCTTCTCCTGTCACCACTGCCGT
TGGGGTCTCTGCGTCAGCTCAAAGTGCGCACGACTCCATCGCACCAGAGC
TTCCCCTGCATTCGCTGCATATCTTGCGCGCCTTGCTGGAAAGTCTTTCC
ATTCTCACCATCAAGACCGTGCCTTTTCCGTCACTCCATGATGACTTGCA
ACGCGCTAGCCTCCGTGTGACACATCTCTCAGCAGAGACATTGAACACTC
TGCGCCTGTTCTGCTCCTCTGCTGTGAAGGAACGTTACGATATTCGCGTC
GTGCATGATCTCTTGAAAGATGGTTTATATCCTGCCGCAAAATCTCTTCT
CTTAGCCTCCAACTCTCAGCACCGAAGACTTGCACAAGTTTCCAATTCAC
TTGCGATGGAATACGAACAGACTGCCAATGCTGTAACAGAATGCCTCACG
CGTGCGACACATGCGCGCGCCGAACAGAGTTCACGTCAAAATGAGCGTCA
GGCCGTAGTCACCAGCACGTTCAACCAACTCACCAACACCAGACGAAAAG
CACAGGGTGCTTTGCGCGCATTTGAAGAAGCCGAAAAGCTTCACGACCAA
GCTGAACAGAGGGAAGCCGTGGCGCGGAAAAGAGTGGTTGCTCTACAGGC
TGCGCATGTGGCTGCCGTGGTGGGAGGCTTTGTCAGCGCTAGGTCAACAC
CATTTGTAATTGGTGCTGGCTCCGCTGCTGCGTTGGCCTCTACGTTTGAG
GGTGAGGTCATGCGCGCGCGGGAGGAGCGTGCCGTACATCTCAGACAACG
CAACGATGCTCGTGATCGCCGTTCCGATTTGGAAGTTAGTGTGGCCACGC
TTGTCACTGAGTTGCGAGAGCGTAAGAGGGAAGAGGTTCTTGAAAGCACA
GTCTTGGATTCGCTTATCGACTGTGCAACCACATTGAGAAGACTGGCCGG
AGTAATGCTGAAAGCGGAGGCTTTCTGGAAGGGTTTGTCCACGGGGTTAC
AGGACCGTCTACTGGAACTAGTTGTGGCAGCGGAGGGACGCGAATTTGAC
GACGGTATGGGAGAAAGATTGTTGCAAGTGGAAACGTTCTGGGAAGCCGT
GGGATCAGTGTGCGAGAACGCTTCAAAAGGGGTGGACAGTGGGCTGAACC
GTGATGTAGTGATCGAAGGGCGTCAAATTGACAGAATTGAATGGGATGTT
TGA
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