Gchil5553.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5553.t1
Unique NameGchil5553.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2392079..2392906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5553Gchil5553Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2392079..2392906 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5553.t1.stop1Gchil5553.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2392079..2392081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5553.t1.CDS1Gchil5553.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2392079..2392906 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5553.t1.exon1Gchil5553.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2392079..2392906 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5553.t1.start1Gchil5553.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2392904..2392906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5553.t1Gchil5553.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2392079..2392906 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5553.t1 ID=Gchil5553.t1|Name=Gchil5553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MRETRAFVPTMLPLRAPLRACAAKKSGGAKSDGAKSDGAKSDGAKSDGKN
VAKNGAKSSAKSSAKSSAKSGAKRVARPNMRPRRPKTPPDVKAYSIADTL
RDSPHLNSTLLTAMRDYFGDDGREVQDYTKRPRTENGEAMFRCVIVGSGR
RELQLAKMLKQSGVIRGLYYCPDDDVACDIEMNKFAQSATVSAEKRPKDV
VRFAKWCVADAVFIGPDRQHRIDREAEGELAQAKITVFPHDVSAAIADGS
MDVKQCLFPLAQGEEEQRADEQLVE*
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spliced messenger RNA

>Gchil5553.t1 ID=Gchil5553.t1|Name=Gchil5553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004418_pilon:2392079..2392906- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGAGACGCGCGCCTTCGTCCCAACGATGCTTCCGCTGCGCGCGCC
GCTGCGTGCATGCGCCGCGAAGAAGAGCGGCGGTGCCAAGAGCGACGGTG
CCAAGAGCGACGGTGCCAAGAGCGACGGTGCCAAGAGCGACGGTAAGAAC
GTGGCAAAGAACGGCGCCAAAAGCTCCGCCAAGAGCTCCGCCAAGAGCTC
CGCCAAGAGCGGCGCCAAGCGCGTGGCGCGGCCAAACATGCGCCCAAGGC
GTCCGAAAACGCCGCCCGACGTGAAGGCGTATAGCATCGCAGACACGTTG
CGCGACTCGCCGCATCTCAACAGCACGCTACTGACGGCCATGCGCGATTA
CTTTGGGGACGACGGGCGCGAGGTGCAGGACTACACCAAGCGACCGCGCA
CAGAAAACGGTGAGGCTATGTTTCGCTGCGTCATAGTGGGCTCTGGACGA
CGCGAATTACAACTGGCCAAGATGTTGAAACAAAGCGGAGTCATTCGTGG
GTTGTATTATTGTCCAGATGACGACGTGGCGTGTGATATTGAGATGAACA
AATTTGCACAGTCTGCGACGGTGAGCGCGGAGAAACGACCAAAGGATGTT
GTGCGGTTTGCAAAGTGGTGCGTGGCGGACGCGGTGTTCATCGGGCCGGA
CAGGCAGCATCGTATAGACAGGGAGGCGGAGGGTGAGTTGGCGCAAGCTA
AGATCACGGTGTTTCCGCACGACGTGTCCGCGGCTATTGCAGACGGCAGC
ATGGACGTGAAGCAATGTTTGTTTCCGTTGGCACAGGGCGAAGAGGAGCA
GCGCGCGGACGAGCAACTAGTAGAATAA
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protein sequence of Gchil5553.t1

>Gchil5553.t1 ID=Gchil5553.t1|Name=Gchil5553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MRETRAFVPTMLPLRAPLRACAAKKSGGAKSDGAKSDGAKSDGAKSDGKN
VAKNGAKSSAKSSAKSSAKSGAKRVARPNMRPRRPKTPPDVKAYSIADTL
RDSPHLNSTLLTAMRDYFGDDGREVQDYTKRPRTENGEAMFRCVIVGSGR
RELQLAKMLKQSGVIRGLYYCPDDDVACDIEMNKFAQSATVSAEKRPKDV
VRFAKWCVADAVFIGPDRQHRIDREAEGELAQAKITVFPHDVSAAIADGS
MDVKQCLFPLAQGEEEQRADEQLVE*
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mRNA from alignment at tig00004418_pilon:2392079..2392906-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5553.t1 ID=Gchil5553.t1|Name=Gchil5553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004418_pilon:2392079..2392906- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGAGACGCGCGCCTTCGTCCCAACGATGCTTCCGCTGCGCGCGCC
GCTGCGTGCATGCGCCGCGAAGAAGAGCGGCGGTGCCAAGAGCGACGGTG
CCAAGAGCGACGGTGCCAAGAGCGACGGTGCCAAGAGCGACGGTAAGAAC
GTGGCAAAGAACGGCGCCAAAAGCTCCGCCAAGAGCTCCGCCAAGAGCTC
CGCCAAGAGCGGCGCCAAGCGCGTGGCGCGGCCAAACATGCGCCCAAGGC
GTCCGAAAACGCCGCCCGACGTGAAGGCGTATAGCATCGCAGACACGTTG
CGCGACTCGCCGCATCTCAACAGCACGCTACTGACGGCCATGCGCGATTA
CTTTGGGGACGACGGGCGCGAGGTGCAGGACTACACCAAGCGACCGCGCA
CAGAAAACGGTGAGGCTATGTTTCGCTGCGTCATAGTGGGCTCTGGACGA
CGCGAATTACAACTGGCCAAGATGTTGAAACAAAGCGGAGTCATTCGTGG
GTTGTATTATTGTCCAGATGACGACGTGGCGTGTGATATTGAGATGAACA
AATTTGCACAGTCTGCGACGGTGAGCGCGGAGAAACGACCAAAGGATGTT
GTGCGGTTTGCAAAGTGGTGCGTGGCGGACGCGGTGTTCATCGGGCCGGA
CAGGCAGCATCGTATAGACAGGGAGGCGGAGGGTGAGTTGGCGCAAGCTA
AGATCACGGTGTTTCCGCACGACGTGTCCGCGGCTATTGCAGACGGCAGC
ATGGACGTGAAGCAATGTTTGTTTCCGTTGGCACAGGGCGAAGAGGAGCA
GCGCGCGGACGAGCAACTAGTAGAATAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2392079..2392906-

>Gchil5553.t1 ID=Gchil5553.t1|Name=Gchil5553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00004418_pilon:2392079..2392906- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGAGACGCGCGCCTTCGTCCCAACGATGCTTCCGCTGCGCGCGCC
GCTGCGTGCATGCGCCGCGAAGAAGAGCGGCGGTGCCAAGAGCGACGGTG
CCAAGAGCGACGGTGCCAAGAGCGACGGTGCCAAGAGCGACGGTAAGAAC
GTGGCAAAGAACGGCGCCAAAAGCTCCGCCAAGAGCTCCGCCAAGAGCTC
CGCCAAGAGCGGCGCCAAGCGCGTGGCGCGGCCAAACATGCGCCCAAGGC
GTCCGAAAACGCCGCCCGACGTGAAGGCGTATAGCATCGCAGACACGTTG
CGCGACTCGCCGCATCTCAACAGCACGCTACTGACGGCCATGCGCGATTA
CTTTGGGGACGACGGGCGCGAGGTGCAGGACTACACCAAGCGACCGCGCA
CAGAAAACGGTGAGGCTATGTTTCGCTGCGTCATAGTGGGCTCTGGACGA
CGCGAATTACAACTGGCCAAGATGTTGAAACAAAGCGGAGTCATTCGTGG
GTTGTATTATTGTCCAGATGACGACGTGGCGTGTGATATTGAGATGAACA
AATTTGCACAGTCTGCGACGGTGAGCGCGGAGAAACGACCAAAGGATGTT
GTGCGGTTTGCAAAGTGGTGCGTGGCGGACGCGGTGTTCATCGGGCCGGA
CAGGCAGCATCGTATAGACAGGGAGGCGGAGGGTGAGTTGGCGCAAGCTA
AGATCACGGTGTTTCCGCACGACGTGTCCGCGGCTATTGCAGACGGCAGC
ATGGACGTGAAGCAATGTTTGTTTCCGTTGGCACAGGGCGAAGAGGAGCA
GCGCGCGGACGAGCAACTAGTAGAATAA
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