Gchil5549.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5549.t1
Unique NameGchil5549.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2380337..2381884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI1G46610.1
PFAMsKetoacyl-synt_C,ketoacyl-synt
Max annot lvl35493|Streptophyta
KEGG rclassRC00039,RC02728,RC02729,RC02888
KEGG koko:K09458
KEGG ReactionR04355,R04726,R04952,R04957,R04960,R04963,R04968,R07762,R10115,R10119
KEGG Pathwayko00061,ko00780,ko01100,ko01212,map00061,map00780,map01100,map01212
KEGG ModuleM00083,M00572
Evalue6.47e-189
EggNOG OGsCOG0304@1|root,KOG1394@2759|Eukaryota,37JJ8@33090|Viridiplantae,3GEQX@35493|Streptophyta,3KNWJ@4447|Liliopsida,3I2E5@38820|Poales
EC2.3.1.179
DescriptionBelongs to the beta-ketoacyl-ACP synthases family
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5549Gchil5549Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2380337..2381884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5549.t1Gchil5549.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2380337..2381884 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5549.t1.stop1Gchil5549.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2380337..2380339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5549.t1.CDS1Gchil5549.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2380337..2381155 -
Gchil5549.t1.CDS2Gchil5549.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2381264..2381884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5549.t1.exon1Gchil5549.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2380337..2381155 -
Gchil5549.t1.exon2Gchil5549.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2381264..2381884 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5549.t1.intron1Gchil5549.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2381156..2381263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5549.t1.start1Gchil5549.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2381882..2381884 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5549.t1 ID=Gchil5549.t1|Name=Gchil5549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MHRFHTTFVSAPVTLTSSSKSRWLRPSPHNVTSLPDRPTRTLSTTPIKMI
SLTRETANGPVKRIVVTGTGVVSCFGCDSEKFYASLLEGKSGVKRVTNFD
TEGWSTNFAAVIDPELVETDGYVKPKLMRRLDPFLKYAIVAGKKALENAG
LGLGSDALEAINKKRAGVLCGSGMGGLNIYSQGVETLLKRGQSRMSPFFI
PYAITNMASALIGMDIGFMGPNYSVSTACATGNFMINNAAIHIRRGDCDI
CVAGGSEAAIVPVGLGGFIACRALSSRNDDPQGASRPWDKTRDGFVMGEG
AGLLVLESLEHALQRGAPIIAEYYGGAQSCDAHHITEPRQDGGGVRMCIT
HALEDAGVRKEDVDYINAHATSTLAGDLAEFRAVRSVFDGDVSKLKMNAT
KSMIGHALGAAGGLEAVATVKAIETGKIHPTINIHDQEPEVDIDIVPNVM
QEAEISVGISNSFGFGGHNSTVVFGKYSE*
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spliced messenger RNA

>Gchil5549.t1 ID=Gchil5549.t1|Name=Gchil5549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00004418_pilon:2380337..2381884- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCGTTTTCACACAACCTTTGTTTCAGCGCCCGTTACGCTGACATC
TTCTTCAAAGTCCAGATGGCTTCGACCGAGCCCTCACAACGTAACATCGC
TGCCGGATCGACCGACTCGAACGTTGTCGACAACCCCAATTAAAATGATC
TCTCTAACGCGCGAAACCGCCAATGGACCCGTTAAGCGCATCGTCGTCAC
CGGCACAGGTGTGGTATCCTGCTTCGGATGTGATTCCGAAAAATTCTACG
CTTCTCTTCTTGAGGGAAAGAGCGGTGTGAAAAGAGTAACTAATTTTGAT
ACTGAGGGATGGAGCACTAATTTTGCCGCTGTGATTGACCCGGAGTTGGT
AGAGACTGATGGTTATGTCAAACCCAAGCTTATGAGACGTCTTGATCCGT
TTCTTAAGTATGCGATTGTCGCAGGAAAGAAAGCGCTTGAAAATGCGGGA
CTAGGTCTTGGATCGGATGCTCTTGAAGCAATTAATAAGAAAAGGGCGGG
CGTTCTTTGTGGCTCTGGCATGGGAGGGTTGAATATTTATTCACAAGGAG
TTGAGACGCTGCTTAAGCGAGGTCAAAGTCGCATGTCGCCGTTTTTCATT
CCCTATGCTATCACCAATATGGCATCTGCGCTCATTGGTATGGATATAGG
CTTCATGGGTCCCAACTACTCAGTGTCGACAGCGTGTGCGACTGGTAACT
TTATGATAAATAATGCGGCCATCCATATCCGAAGGGGAGACTGTGACATT
TGTGTTGCTGGTGGATCTGAAGCAGCCATTGTGCCAGTGGGTCTGGGAGG
TTTCATTGCATGTCGCGCTCTCTCATCCAGAAATGATGATCCACAAGGTG
CGTCAAGACCATGGGACAAGACTCGAGATGGTTTTGTAATGGGAGAAGGT
GCTGGGCTATTGGTCCTCGAGAGTCTTGAACATGCTTTACAACGCGGTGC
GCCAATAATTGCCGAATATTACGGCGGCGCTCAGAGTTGCGATGCCCACC
ACATCACAGAGCCAAGACAAGATGGTGGCGGCGTGAGAATGTGTATCACT
CACGCCTTGGAAGATGCTGGCGTCCGTAAAGAGGACGTTGACTATATCAA
TGCGCATGCAACCTCAACACTGGCAGGAGACCTTGCAGAATTTCGGGCTG
TGCGGAGTGTATTTGACGGCGACGTGAGCAAGTTGAAGATGAACGCTACC
AAGTCGATGATTGGTCATGCGTTGGGAGCTGCGGGTGGGCTCGAAGCTGT
CGCAACTGTTAAGGCCATCGAGACGGGCAAAATTCACCCTACAATTAACA
TCCATGACCAAGAACCTGAGGTTGATATCGATATCGTGCCGAACGTGATG
CAGGAGGCGGAAATTTCCGTTGGTATTTCTAACTCATTCGGTTTCGGCGG
GCATAACAGTACTGTTGTATTTGGGAAGTACTCGGAATGA
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protein sequence of Gchil5549.t1

>Gchil5549.t1 ID=Gchil5549.t1|Name=Gchil5549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MHRFHTTFVSAPVTLTSSSKSRWLRPSPHNVTSLPDRPTRTLSTTPIKMI
SLTRETANGPVKRIVVTGTGVVSCFGCDSEKFYASLLEGKSGVKRVTNFD
TEGWSTNFAAVIDPELVETDGYVKPKLMRRLDPFLKYAIVAGKKALENAG
LGLGSDALEAINKKRAGVLCGSGMGGLNIYSQGVETLLKRGQSRMSPFFI
PYAITNMASALIGMDIGFMGPNYSVSTACATGNFMINNAAIHIRRGDCDI
CVAGGSEAAIVPVGLGGFIACRALSSRNDDPQGASRPWDKTRDGFVMGEG
AGLLVLESLEHALQRGAPIIAEYYGGAQSCDAHHITEPRQDGGGVRMCIT
HALEDAGVRKEDVDYINAHATSTLAGDLAEFRAVRSVFDGDVSKLKMNAT
KSMIGHALGAAGGLEAVATVKAIETGKIHPTINIHDQEPEVDIDIVPNVM
QEAEISVGISNSFGFGGHNSTVVFGKYSE*
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mRNA from alignment at tig00004418_pilon:2380337..2381884-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5549.t1 ID=Gchil5549.t1|Name=Gchil5549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00004418_pilon:2380337..2381884- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCGTTTTCACACAACCTTTGTTTCAGCGCCCGTTACGCTGACATC
TTCTTCAAAGTCCAGATGGCTTCGACCGAGCCCTCACAACGTAACATCGC
TGCCGGATCGACCGACTCGAACGTTGTCGACAACCCCAATTAAAATGATC
TCTCTAACGCGCGAAACCGCCAATGGACCCGTTAAGCGCATCGTCGTCAC
CGGCACAGGTGTGGTATCCTGCTTCGGATGTGATTCCGAAAAATTCTACG
CTTCTCTTCTTGAGGGAAAGAGCGGTGTGAAAAGAGTAACTAATTTTGAT
ACTGAGGGATGGAGCACTAATTTTGCCGCTGTGATTGACCCGGAGTTGGT
AGAGACTGATGGTTATGTCAAACCCAAGCTTATGAGACGTCTTGATCCGT
TTCTTAAGTATGCGATTGTCGCAGGAAAGAAAGCGCTTGAAAATGCGGGA
CTAGGTCTTGGATCGGATGCTCTTGAAGCAATTAATAAGAAAAGGGCGGG
CGTTCTTTGTGGCTCTGGCATGGGAGGGTTGAATATTTATTCACAAGGAG
TTGAGACGCTGCTTAAGCGAGGTCAAAGTCGCATGTCGCCGTTTTTCATT
CCCTATGCTATCACCAATATGGTATGTTGTAGAACAGAAATTCGACACCC
GTTTAGCGCCGGGAGAAAAGCTTTTCCTAACCTTAACCCTCTGTTTATAT
GTTGTTGTTAATGCGTGTTTTTTCATCAGGCATCTGCGCTCATTGGTATG
GATATAGGCTTCATGGGTCCCAACTACTCAGTGTCGACAGCGTGTGCGAC
TGGTAACTTTATGATAAATAATGCGGCCATCCATATCCGAAGGGGAGACT
GTGACATTTGTGTTGCTGGTGGATCTGAAGCAGCCATTGTGCCAGTGGGT
CTGGGAGGTTTCATTGCATGTCGCGCTCTCTCATCCAGAAATGATGATCC
ACAAGGTGCGTCAAGACCATGGGACAAGACTCGAGATGGTTTTGTAATGG
GAGAAGGTGCTGGGCTATTGGTCCTCGAGAGTCTTGAACATGCTTTACAA
CGCGGTGCGCCAATAATTGCCGAATATTACGGCGGCGCTCAGAGTTGCGA
TGCCCACCACATCACAGAGCCAAGACAAGATGGTGGCGGCGTGAGAATGT
GTATCACTCACGCCTTGGAAGATGCTGGCGTCCGTAAAGAGGACGTTGAC
TATATCAATGCGCATGCAACCTCAACACTGGCAGGAGACCTTGCAGAATT
TCGGGCTGTGCGGAGTGTATTTGACGGCGACGTGAGCAAGTTGAAGATGA
ACGCTACCAAGTCGATGATTGGTCATGCGTTGGGAGCTGCGGGTGGGCTC
GAAGCTGTCGCAACTGTTAAGGCCATCGAGACGGGCAAAATTCACCCTAC
AATTAACATCCATGACCAAGAACCTGAGGTTGATATCGATATCGTGCCGA
ACGTGATGCAGGAGGCGGAAATTTCCGTTGGTATTTCTAACTCATTCGGT
TTCGGCGGGCATAACAGTACTGTTGTATTTGGGAAGTACTCGGAATGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2380337..2381884-

>Gchil5549.t1 ID=Gchil5549.t1|Name=Gchil5549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00004418_pilon:2380337..2381884- (Gracilaria chilensis NLEC103_M9 male)
ATGCACCGTTTTCACACAACCTTTGTTTCAGCGCCCGTTACGCTGACATC
TTCTTCAAAGTCCAGATGGCTTCGACCGAGCCCTCACAACGTAACATCGC
TGCCGGATCGACCGACTCGAACGTTGTCGACAACCCCAATTAAAATGATC
TCTCTAACGCGCGAAACCGCCAATGGACCCGTTAAGCGCATCGTCGTCAC
CGGCACAGGTGTGGTATCCTGCTTCGGATGTGATTCCGAAAAATTCTACG
CTTCTCTTCTTGAGGGAAAGAGCGGTGTGAAAAGAGTAACTAATTTTGAT
ACTGAGGGATGGAGCACTAATTTTGCCGCTGTGATTGACCCGGAGTTGGT
AGAGACTGATGGTTATGTCAAACCCAAGCTTATGAGACGTCTTGATCCGT
TTCTTAAGTATGCGATTGTCGCAGGAAAGAAAGCGCTTGAAAATGCGGGA
CTAGGTCTTGGATCGGATGCTCTTGAAGCAATTAATAAGAAAAGGGCGGG
CGTTCTTTGTGGCTCTGGCATGGGAGGGTTGAATATTTATTCACAAGGAG
TTGAGACGCTGCTTAAGCGAGGTCAAAGTCGCATGTCGCCGTTTTTCATT
CCCTATGCTATCACCAATATGGCATCTGCGCTCATTGGTATGGATATAGG
CTTCATGGGTCCCAACTACTCAGTGTCGACAGCGTGTGCGACTGGTAACT
TTATGATAAATAATGCGGCCATCCATATCCGAAGGGGAGACTGTGACATT
TGTGTTGCTGGTGGATCTGAAGCAGCCATTGTGCCAGTGGGTCTGGGAGG
TTTCATTGCATGTCGCGCTCTCTCATCCAGAAATGATGATCCACAAGGTG
CGTCAAGACCATGGGACAAGACTCGAGATGGTTTTGTAATGGGAGAAGGT
GCTGGGCTATTGGTCCTCGAGAGTCTTGAACATGCTTTACAACGCGGTGC
GCCAATAATTGCCGAATATTACGGCGGCGCTCAGAGTTGCGATGCCCACC
ACATCACAGAGCCAAGACAAGATGGTGGCGGCGTGAGAATGTGTATCACT
CACGCCTTGGAAGATGCTGGCGTCCGTAAAGAGGACGTTGACTATATCAA
TGCGCATGCAACCTCAACACTGGCAGGAGACCTTGCAGAATTTCGGGCTG
TGCGGAGTGTATTTGACGGCGACGTGAGCAAGTTGAAGATGAACGCTACC
AAGTCGATGATTGGTCATGCGTTGGGAGCTGCGGGTGGGCTCGAAGCTGT
CGCAACTGTTAAGGCCATCGAGACGGGCAAAATTCACCCTACAATTAACA
TCCATGACCAAGAACCTGAGGTTGATATCGATATCGTGCCGAACGTGATG
CAGGAGGCGGAAATTTCCGTTGGTATTTCTAACTCATTCGGTTTCGGCGG
GCATAACAGTACTGTTGTATTTGGGAAGTACTCGGAATGA
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