Gchil5545.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5545.t1
Unique NameGchil5545.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2374118..2375035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121875.KB907546_gene2512
PFAMsADH_N,ADH_N_2,ADH_zinc_N
Max annot lvl976|Bacteroidetes
KEGG koko:K07119
Evalue2.8e-84
EggNOG OGsCOG2130@1|root,COG2130@2|Bacteria,4NGHX@976|Bacteroidetes,1HXE6@117743|Flavobacteriia
DescriptionDehydrogenase
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5545Gchil5545Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2374118..2375035 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5545.t1.start1Gchil5545.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2374118..2374120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5545.t1.CDS1Gchil5545.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2374118..2375035 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5545.t1.exon1Gchil5545.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2374118..2375035 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5545.t1.stop1Gchil5545.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2375033..2375035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5545.t1Gchil5545.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2374118..2375035 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5545.t1 ID=Gchil5545.t1|Name=Gchil5545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=306bp
MRGWLSTRKSYIAPVAIGSTMRAMGVGTVVRGGAGFRVGQLVTGLFGWAE
YCVMKAERVTRVRVPPGMPKSVALGVLGITGMTAYFGLLKIGKPKKGDIV
VVSSAAGGTGSVVAQIAKNIIGCEVIGIAGGLEKCRYLEEDLGIKAVDYK
SEEGVGKGLKRALNGKGIDIYYDNVGGKILEAALARINIGARIVVCGAIS
GYNSSNLPPGPSNYVALISKRASMTGFLLYDFEKQFPTANYHLSKWLVSG
KVKGREHEVIGLRNAPAALKALFDGKNIGKVIVRVLEDEDKLDRCDSKKR
RAAKL*
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spliced messenger RNA

>Gchil5545.t1 ID=Gchil5545.t1|Name=Gchil5545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00004418_pilon:2374118..2375035+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGGTTGGCTAAGCACACGCAAGTCATATATCGCTCCAGTAGCAAT
TGGTTCAACAATGCGAGCAATGGGTGTTGGAACTGTGGTACGCGGTGGAG
CAGGTTTTCGTGTTGGACAGCTCGTAACAGGCCTTTTCGGGTGGGCAGAA
TATTGCGTCATGAAAGCCGAACGGGTAACTCGAGTAAGAGTTCCTCCTGG
TATGCCGAAGTCCGTAGCCCTTGGCGTGCTTGGTATAACAGGCATGACTG
CTTATTTCGGACTGTTGAAAATTGGTAAACCGAAAAAGGGCGATATTGTT
GTTGTTTCTTCCGCGGCAGGTGGCACCGGAAGCGTTGTTGCGCAGATTGC
CAAGAACATCATTGGATGCGAAGTGATTGGCATTGCAGGTGGATTAGAAA
AATGTCGCTACTTGGAAGAAGACCTTGGCATCAAAGCGGTGGACTATAAA
AGCGAGGAAGGTGTTGGCAAAGGTTTAAAGCGCGCTTTAAACGGGAAAGG
AATTGATATCTATTACGACAATGTTGGCGGGAAAATCCTAGAAGCGGCCC
TGGCAAGAATCAACATCGGCGCTAGAATAGTCGTTTGTGGGGCCATTAGC
GGTTACAACAGCAGCAATCTCCCACCAGGACCCTCAAACTATGTTGCCCT
CATTTCCAAACGTGCCTCCATGACAGGATTCTTGTTGTATGATTTTGAGA
AGCAGTTCCCCACCGCCAATTACCACTTGTCAAAATGGCTAGTGTCCGGA
AAGGTAAAGGGTAGAGAGCACGAGGTTATTGGATTGAGAAATGCACCCGC
GGCGTTGAAAGCATTGTTTGATGGAAAGAACATTGGCAAAGTGATTGTAC
GAGTGTTGGAAGACGAAGACAAGCTTGACAGGTGTGATTCGAAGAAGAGA
CGTGCGGCAAAATTATGA
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protein sequence of Gchil5545.t1

>Gchil5545.t1 ID=Gchil5545.t1|Name=Gchil5545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MRGWLSTRKSYIAPVAIGSTMRAMGVGTVVRGGAGFRVGQLVTGLFGWAE
YCVMKAERVTRVRVPPGMPKSVALGVLGITGMTAYFGLLKIGKPKKGDIV
VVSSAAGGTGSVVAQIAKNIIGCEVIGIAGGLEKCRYLEEDLGIKAVDYK
SEEGVGKGLKRALNGKGIDIYYDNVGGKILEAALARINIGARIVVCGAIS
GYNSSNLPPGPSNYVALISKRASMTGFLLYDFEKQFPTANYHLSKWLVSG
KVKGREHEVIGLRNAPAALKALFDGKNIGKVIVRVLEDEDKLDRCDSKKR
RAAKL*
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mRNA from alignment at tig00004418_pilon:2374118..2375035+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5545.t1 ID=Gchil5545.t1|Name=Gchil5545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00004418_pilon:2374118..2375035+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGGTTGGCTAAGCACACGCAAGTCATATATCGCTCCAGTAGCAAT
TGGTTCAACAATGCGAGCAATGGGTGTTGGAACTGTGGTACGCGGTGGAG
CAGGTTTTCGTGTTGGACAGCTCGTAACAGGCCTTTTCGGGTGGGCAGAA
TATTGCGTCATGAAAGCCGAACGGGTAACTCGAGTAAGAGTTCCTCCTGG
TATGCCGAAGTCCGTAGCCCTTGGCGTGCTTGGTATAACAGGCATGACTG
CTTATTTCGGACTGTTGAAAATTGGTAAACCGAAAAAGGGCGATATTGTT
GTTGTTTCTTCCGCGGCAGGTGGCACCGGAAGCGTTGTTGCGCAGATTGC
CAAGAACATCATTGGATGCGAAGTGATTGGCATTGCAGGTGGATTAGAAA
AATGTCGCTACTTGGAAGAAGACCTTGGCATCAAAGCGGTGGACTATAAA
AGCGAGGAAGGTGTTGGCAAAGGTTTAAAGCGCGCTTTAAACGGGAAAGG
AATTGATATCTATTACGACAATGTTGGCGGGAAAATCCTAGAAGCGGCCC
TGGCAAGAATCAACATCGGCGCTAGAATAGTCGTTTGTGGGGCCATTAGC
GGTTACAACAGCAGCAATCTCCCACCAGGACCCTCAAACTATGTTGCCCT
CATTTCCAAACGTGCCTCCATGACAGGATTCTTGTTGTATGATTTTGAGA
AGCAGTTCCCCACCGCCAATTACCACTTGTCAAAATGGCTAGTGTCCGGA
AAGGTAAAGGGTAGAGAGCACGAGGTTATTGGATTGAGAAATGCACCCGC
GGCGTTGAAAGCATTGTTTGATGGAAAGAACATTGGCAAAGTGATTGTAC
GAGTGTTGGAAGACGAAGACAAGCTTGACAGGTGTGATTCGAAGAAGAGA
CGTGCGGCAAAATTATGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:2374118..2375035+

>Gchil5545.t1 ID=Gchil5545.t1|Name=Gchil5545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00004418_pilon:2374118..2375035+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGGTTGGCTAAGCACACGCAAGTCATATATCGCTCCAGTAGCAAT
TGGTTCAACAATGCGAGCAATGGGTGTTGGAACTGTGGTACGCGGTGGAG
CAGGTTTTCGTGTTGGACAGCTCGTAACAGGCCTTTTCGGGTGGGCAGAA
TATTGCGTCATGAAAGCCGAACGGGTAACTCGAGTAAGAGTTCCTCCTGG
TATGCCGAAGTCCGTAGCCCTTGGCGTGCTTGGTATAACAGGCATGACTG
CTTATTTCGGACTGTTGAAAATTGGTAAACCGAAAAAGGGCGATATTGTT
GTTGTTTCTTCCGCGGCAGGTGGCACCGGAAGCGTTGTTGCGCAGATTGC
CAAGAACATCATTGGATGCGAAGTGATTGGCATTGCAGGTGGATTAGAAA
AATGTCGCTACTTGGAAGAAGACCTTGGCATCAAAGCGGTGGACTATAAA
AGCGAGGAAGGTGTTGGCAAAGGTTTAAAGCGCGCTTTAAACGGGAAAGG
AATTGATATCTATTACGACAATGTTGGCGGGAAAATCCTAGAAGCGGCCC
TGGCAAGAATCAACATCGGCGCTAGAATAGTCGTTTGTGGGGCCATTAGC
GGTTACAACAGCAGCAATCTCCCACCAGGACCCTCAAACTATGTTGCCCT
CATTTCCAAACGTGCCTCCATGACAGGATTCTTGTTGTATGATTTTGAGA
AGCAGTTCCCCACCGCCAATTACCACTTGTCAAAATGGCTAGTGTCCGGA
AAGGTAAAGGGTAGAGAGCACGAGGTTATTGGATTGAGAAATGCACCCGC
GGCGTTGAAAGCATTGTTTGATGGAAAGAACATTGGCAAAGTGATTGTAC
GAGTGTTGGAAGACGAAGACAAGCTTGACAGGTGTGATTCGAAGAAGAGA
CGTGCGGCAAAATTATGA
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