Gchil5517.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5517.t1
Unique NameGchil5517.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2276210..2276751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog128390.XP_009460875.1
Preferred nameCALML3
PFAMsEF-hand_1,EF-hand_5,EF-hand_6
Max annot lvl33208|Metazoa
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Evalue9.73e-21
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,3A0I4@33154|Opisthokonta,3BPXJ@33208|Metazoa,3D700@33213|Bilateria,48EAZ@7711|Chordata,49BCT@7742|Vertebrata,4GRT1@8782|Aves
DescriptionCa2 insensitive EF hand
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5517Gchil5517Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2276210..2276751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5517.t1Gchil5517.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2276210..2276751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5517.t1.start1Gchil5517.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2276210..2276212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5517.t1.CDS1Gchil5517.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2276210..2276300 +
Gchil5517.t1.CDS2Gchil5517.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2276384..2276751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5517.t1.exon1Gchil5517.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2276210..2276300 +
Gchil5517.t1.exon2Gchil5517.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2276384..2276751 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5517.t1.intron1Gchil5517.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2276301..2276383 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5517.t1.stop1Gchil5517.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2276749..2276751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5517.t1 ID=Gchil5517.t1|Name=Gchil5517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=153bp
MSSSSSATRVTSDDDENLRAIFDVFDPSGKGCVPTDRIASIIRAAGEYPT
EVTVSELINKYSISGDTVTFEQFVSAICEVRKKHKKLSTSEVEAAFRIFD
SSPYVAVADLKKTLTQFGEKLCEEEIDRLVNLVGTTEDGRIDKKEMALQL
TS*
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spliced messenger RNA

>Gchil5517.t1 ID=Gchil5517.t1|Name=Gchil5517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00004418_pilon:2276210..2276751+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTTCATCATCAGCGACCAGAGTTACGTCCGATGATGATGAGAA
TCTTAGAGCAATCTTTGACGTATTTGATCCGTCTGGAAAGGGTTGCGTCC
CGACCGACCGCATCGCTAGCATCATCCGCGCTGCGGGCGAATACCCTACA
GAGGTAACCGTGAGCGAACTGATAAACAAATACAGTATAAGCGGTGATAC
GGTTACCTTCGAACAATTCGTTTCCGCCATTTGCGAAGTGCGGAAAAAGC
ACAAAAAGCTTTCTACTTCGGAAGTAGAAGCAGCATTTCGAATTTTCGAT
TCGTCACCGTATGTTGCTGTTGCTGACTTGAAAAAAACTTTGACACAGTT
CGGAGAGAAACTCTGTGAAGAAGAAATTGATCGACTCGTGAATCTTGTGG
GAACAACGGAAGATGGGCGTATTGATAAGAAAGAAATGGCCTTACAGTTA
ACGTCTTAG
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protein sequence of Gchil5517.t1

>Gchil5517.t1 ID=Gchil5517.t1|Name=Gchil5517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=153bp
MSSSSSATRVTSDDDENLRAIFDVFDPSGKGCVPTDRIASIIRAAGEYPT
EVTVSELINKYSISGDTVTFEQFVSAICEVRKKHKKLSTSEVEAAFRIFD
SSPYVAVADLKKTLTQFGEKLCEEEIDRLVNLVGTTEDGRIDKKEMALQL
TS*
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mRNA from alignment at tig00004418_pilon:2276210..2276751+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5517.t1 ID=Gchil5517.t1|Name=Gchil5517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=542bp|location=Sequence derived from alignment at tig00004418_pilon:2276210..2276751+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTTCATCATCAGCGACCAGAGTTACGTCCGATGATGATGAGAA
TCTTAGAGCAATCTTTGACGTATTTGATCCGTCTGGAAAGGGTTAGTTAC
GAAATGCAGCGAAACCAAACGTGTACACACTGAGGAGCACTAACTACGTT
CTCATTTTAAAACATTACCAATAGGTTGCGTCCCGACCGACCGCATCGCT
AGCATCATCCGCGCTGCGGGCGAATACCCTACAGAGGTAACCGTGAGCGA
ACTGATAAACAAATACAGTATAAGCGGTGATACGGTTACCTTCGAACAAT
TCGTTTCCGCCATTTGCGAAGTGCGGAAAAAGCACAAAAAGCTTTCTACT
TCGGAAGTAGAAGCAGCATTTCGAATTTTCGATTCGTCACCGTATGTTGC
TGTTGCTGACTTGAAAAAAACTTTGACACAGTTCGGAGAGAAACTCTGTG
AAGAAGAAATTGATCGACTCGTGAATCTTGTGGGAACAACGGAAGATGGG
CGTATTGATAAGAAAGAAATGGCCTTACAGTTAACGTCTTAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:2276210..2276751+

>Gchil5517.t1 ID=Gchil5517.t1|Name=Gchil5517.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00004418_pilon:2276210..2276751+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTTCATCATCAGCGACCAGAGTTACGTCCGATGATGATGAGAA
TCTTAGAGCAATCTTTGACGTATTTGATCCGTCTGGAAAGGGTTGCGTCC
CGACCGACCGCATCGCTAGCATCATCCGCGCTGCGGGCGAATACCCTACA
GAGGTAACCGTGAGCGAACTGATAAACAAATACAGTATAAGCGGTGATAC
GGTTACCTTCGAACAATTCGTTTCCGCCATTTGCGAAGTGCGGAAAAAGC
ACAAAAAGCTTTCTACTTCGGAAGTAGAAGCAGCATTTCGAATTTTCGAT
TCGTCACCGTATGTTGCTGTTGCTGACTTGAAAAAAACTTTGACACAGTT
CGGAGAGAAACTCTGTGAAGAAGAAATTGATCGACTCGTGAATCTTGTGG
GAACAACGGAAGATGGGCGTATTGATAAGAAAGAAATGGCCTTACAGTTA
ACGTCTTAG
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