Gchil5514.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5514.t1
Unique NameGchil5514.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2272487..2273152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5514Gchil5514Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2272487..2273152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5514.t1.start1Gchil5514.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2272487..2272489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5514.t1.CDS1Gchil5514.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2272487..2273152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5514.t1.exon1Gchil5514.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2272487..2273152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5514.t1.stop1Gchil5514.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2273150..2273152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5514.t1Gchil5514.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2272487..2273152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5514.t1 ID=Gchil5514.t1|Name=Gchil5514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp
MMQRISASRSKSRSLRRLATPPCVCVAAAVRVSMQRTDPRPTPVPGESVL
STWPNTKLFLAAGDGSAWASLAAFDGVGTLRLTTCRLLFSLTPPSTARAH
LSIPLAWLRPDRLHIRRPFFDNQHIAGMLTPCELHTPDPIFSACKRMHFR
LQLLDVHVNDELFHALRELIADPQRLALHTRVLRAQVDNKLVPSGKYFAF
VDPTDRRYLHLATQMKHPAFP*
back to top

spliced messenger RNA

>Gchil5514.t1 ID=Gchil5514.t1|Name=Gchil5514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00004418_pilon:2272487..2273152+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAGCGCATATCTGCAAGCCGCAGCAAATCTCGTTCGCTACGTCG
TCTCGCCACGCCGCCTTGCGTCTGCGTCGCCGCTGCCGTGCGCGTCAGCA
TGCAGCGCACCGACCCGCGCCCAACACCCGTCCCGGGAGAGAGCGTGCTG
TCCACCTGGCCGAACACAAAACTCTTCCTCGCCGCTGGCGACGGCTCAGC
CTGGGCCTCTCTTGCCGCCTTCGACGGCGTCGGCACGCTGCGTCTCACTA
CCTGCCGCCTGCTTTTCAGTCTTACGCCTCCATCTACTGCTCGCGCCCAT
CTTTCCATCCCACTGGCCTGGTTACGTCCTGACCGCTTGCATATTCGTCG
CCCGTTCTTTGACAACCAGCACATTGCAGGCATGCTTACGCCATGCGAGT
TGCACACGCCTGACCCTATCTTCAGCGCGTGTAAAAGAATGCATTTTCGA
CTGCAGTTGCTGGACGTGCATGTCAATGATGAGCTTTTCCACGCGCTACG
CGAACTAATAGCTGACCCACAGCGCCTTGCTTTGCACACGCGCGTGCTTC
GTGCGCAAGTTGACAACAAGTTGGTGCCCTCTGGCAAGTATTTTGCTTTT
GTGGATCCCACTGATCGCCGTTACTTGCATCTTGCCACGCAAATGAAGCA
CCCGGCCTTTCCTTAG
back to top

protein sequence of Gchil5514.t1

>Gchil5514.t1 ID=Gchil5514.t1|Name=Gchil5514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=222bp
MMQRISASRSKSRSLRRLATPPCVCVAAAVRVSMQRTDPRPTPVPGESVL
STWPNTKLFLAAGDGSAWASLAAFDGVGTLRLTTCRLLFSLTPPSTARAH
LSIPLAWLRPDRLHIRRPFFDNQHIAGMLTPCELHTPDPIFSACKRMHFR
LQLLDVHVNDELFHALRELIADPQRLALHTRVLRAQVDNKLVPSGKYFAF
VDPTDRRYLHLATQMKHPAFP*
back to top

mRNA from alignment at tig00004418_pilon:2272487..2273152+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5514.t1 ID=Gchil5514.t1|Name=Gchil5514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00004418_pilon:2272487..2273152+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCAGCGCATATCTGCAAGCCGCAGCAAATCTCGTTCGCTACGTCG
TCTCGCCACGCCGCCTTGCGTCTGCGTCGCCGCTGCCGTGCGCGTCAGCA
TGCAGCGCACCGACCCGCGCCCAACACCCGTCCCGGGAGAGAGCGTGCTG
TCCACCTGGCCGAACACAAAACTCTTCCTCGCCGCTGGCGACGGCTCAGC
CTGGGCCTCTCTTGCCGCCTTCGACGGCGTCGGCACGCTGCGTCTCACTA
CCTGCCGCCTGCTTTTCAGTCTTACGCCTCCATCTACTGCTCGCGCCCAT
CTTTCCATCCCACTGGCCTGGTTACGTCCTGACCGCTTGCATATTCGTCG
CCCGTTCTTTGACAACCAGCACATTGCAGGCATGCTTACGCCATGCGAGT
TGCACACGCCTGACCCTATCTTCAGCGCGTGTAAAAGAATGCATTTTCGA
CTGCAGTTGCTGGACGTGCATGTCAATGATGAGCTTTTCCACGCGCTACG
CGAACTAATAGCTGACCCACAGCGCCTTGCTTTGCACACGCGCGTGCTTC
GTGCGCAAGTTGACAACAAGTTGGTGCCCTCTGGCAAGTATTTTGCTTTT
GTGGATCCCACTGATCGCCGTTACTTGCATCTTGCCACGCAAATGAAGCA
CCCGGCCTTTCCTTAG
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:2272487..2273152+

>Gchil5514.t1 ID=Gchil5514.t1|Name=Gchil5514.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00004418_pilon:2272487..2273152+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCAGCGCATATCTGCAAGCCGCAGCAAATCTCGTTCGCTACGTCG
TCTCGCCACGCCGCCTTGCGTCTGCGTCGCCGCTGCCGTGCGCGTCAGCA
TGCAGCGCACCGACCCGCGCCCAACACCCGTCCCGGGAGAGAGCGTGCTG
TCCACCTGGCCGAACACAAAACTCTTCCTCGCCGCTGGCGACGGCTCAGC
CTGGGCCTCTCTTGCCGCCTTCGACGGCGTCGGCACGCTGCGTCTCACTA
CCTGCCGCCTGCTTTTCAGTCTTACGCCTCCATCTACTGCTCGCGCCCAT
CTTTCCATCCCACTGGCCTGGTTACGTCCTGACCGCTTGCATATTCGTCG
CCCGTTCTTTGACAACCAGCACATTGCAGGCATGCTTACGCCATGCGAGT
TGCACACGCCTGACCCTATCTTCAGCGCGTGTAAAAGAATGCATTTTCGA
CTGCAGTTGCTGGACGTGCATGTCAATGATGAGCTTTTCCACGCGCTACG
CGAACTAATAGCTGACCCACAGCGCCTTGCTTTGCACACGCGCGTGCTTC
GTGCGCAAGTTGACAACAAGTTGGTGCCCTCTGGCAAGTATTTTGCTTTT
GTGGATCCCACTGATCGCCGTTACTTGCATCTTGCCACGCAAATGAAGCA
CCCGGCCTTTCCTTAG
back to top