Gchil5513.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5513.t1
Unique NameGchil5513.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length453
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:2270675..2272158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_03733T0
PFAMsAa_trans
Max annot lvl2759|Eukaryota
KEGG koko:K14207,ko:K14992,ko:K14993,ko:K14997
KEGG TC2.A.18.6,2.A.18.6.4,2.A.18.6.5,2.A.18.6.8
KEGG Pathwayko04724,ko04727,ko04974,map04724,map04727,map04974
GOsGO:0000302,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0006950,GO:0006979,GO:0008150,GO:0008509,GO:0008514,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0012505,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0032870,GO:0033554,GO:0034220,GO:0034599,GO:0034614,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071702,GO:0071705,GO:0071731,GO:0071732,GO:0097366,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1903825,GO:1905039
Evalue3.48e-12
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
COG categoryE
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5513Gchil5513Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 2270675..2272158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5513.t1Gchil5513.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 2270675..2272158 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5513.t1.start1Gchil5513.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 2270675..2270677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5513.t1.CDS1Gchil5513.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2270675..2271172 +
Gchil5513.t1.CDS2Gchil5513.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 2271298..2272158 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5513.t1.exon1Gchil5513.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2270675..2271172 +
Gchil5513.t1.exon2Gchil5513.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 2271298..2272158 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5513.t1.intron1Gchil5513.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 2271173..2271297 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5513.t1.stop1Gchil5513.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 2272156..2272158 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5513.t1 ID=Gchil5513.t1|Name=Gchil5513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=453bp
MADNIDRDAISDAAESAGAEMYSTIPSSGEGTALLADAEGGESPTLVSDK
TWPIPDGAPPPTGTIFSSAMNLAACALGASMLSLPYAMMISGPIVAMQFI
GIFAVMAFISAQAVVNAGLRCNKSSYDDIIRHYFGPVQGLVAEILLAVAL
MVAAISYIVGLADLLPKMLPIPSCVGRDSLIIITLIILFPVTLIGNLAAF
GPASAIAAAGCYMQAAALVMQLFTSKEWESPPTETWESVNLGGLVYSMPM
ICFVYAFHYVLTETLCELRNATRMRMALVNATTIAIQIGCYIPVALAGFL
IYSGKNITTNAVEGLPPGSIAGFIATWSIGGLLLITYSLFIIPLRQKLEK
KLYGSLTSSMRDVKRIALAAALNIFVGGAALSLPDLGLANSLAGGCIALI
MFFFPGRLMVRFQNEKEFEDRDPLRLVIGGTFVFFGGLICLVGLFGNLVF
DF*
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spliced messenger RNA

>Gchil5513.t1 ID=Gchil5513.t1|Name=Gchil5513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1359bp|location=Sequence derived from alignment at tig00004418_pilon:2270675..2272158+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGACAACATTGACCGTGATGCTATTTCCGACGCCGCAGAATCGGC
AGGCGCTGAAATGTATTCCACCATCCCGTCGAGTGGTGAGGGCACAGCGC
TTCTTGCAGATGCGGAAGGTGGCGAAAGTCCAACCCTGGTTTCGGACAAG
ACATGGCCGATTCCGGATGGTGCTCCTCCGCCAACAGGCACTATCTTTTC
TTCTGCAATGAATTTGGCGGCATGCGCTTTGGGCGCTTCTATGCTGAGCT
TGCCGTACGCGATGATGATTTCCGGCCCAATCGTGGCGATGCAGTTCATT
GGAATATTTGCTGTGATGGCATTCATCTCGGCTCAGGCTGTCGTGAATGC
TGGTTTAAGGTGCAATAAGAGCTCGTATGATGATATCATCAGGCATTACT
TTGGTCCCGTGCAGGGTTTGGTGGCAGAAATTCTTCTCGCTGTCGCTCTT
ATGGTCGCCGCTATCTCTTACATCGTGGGTCTAGCAGATCTTCTTCCGAA
AATGCTTCCTATTCCGTCCTGCGTTGGACGTGACAGTCTCATTATCATAA
CTCTTATCATTCTATTTCCGGTGACACTCATTGGAAATCTGGCGGCTTTT
GGTCCGGCATCTGCCATTGCGGCCGCCGGCTGCTACATGCAAGCAGCTGC
ACTTGTAATGCAGTTGTTCACCAGCAAGGAGTGGGAATCACCCCCAACAG
AGACATGGGAGTCAGTGAACCTTGGAGGCCTAGTGTACTCCATGCCCATG
ATTTGCTTTGTTTACGCCTTTCATTATGTGTTGACTGAAACTCTGTGTGA
ACTGAGGAATGCGACTCGCATGCGCATGGCGCTTGTGAACGCGACGACGA
TTGCAATCCAAATCGGTTGCTATATCCCGGTGGCGCTTGCTGGATTCTTG
ATCTACAGTGGTAAGAACATCACCACGAACGCCGTGGAAGGGCTGCCCCC
CGGTTCGATTGCTGGCTTTATTGCCACGTGGTCCATTGGCGGTCTTCTTC
TGATCACGTACTCGCTGTTCATCATTCCGTTGCGTCAGAAGCTGGAGAAG
AAGCTGTACGGATCGCTGACTTCATCGATGAGGGATGTGAAGCGTATCGC
GCTAGCTGCAGCACTGAACATATTTGTTGGCGGGGCTGCGCTGTCTTTGC
CGGACTTGGGCTTGGCTAATTCGCTGGCGGGAGGATGCATTGCGCTCATC
ATGTTCTTTTTCCCTGGAAGACTGATGGTGCGCTTCCAGAACGAGAAGGA
ATTCGAAGATCGAGACCCGCTGCGATTGGTAATTGGGGGCACGTTTGTGT
TTTTCGGCGGATTGATTTGCCTCGTCGGTTTGTTTGGCAACCTGGTTTTC
GACTTCTAG
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protein sequence of Gchil5513.t1

>Gchil5513.t1 ID=Gchil5513.t1|Name=Gchil5513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=453bp
MADNIDRDAISDAAESAGAEMYSTIPSSGEGTALLADAEGGESPTLVSDK
TWPIPDGAPPPTGTIFSSAMNLAACALGASMLSLPYAMMISGPIVAMQFI
GIFAVMAFISAQAVVNAGLRCNKSSYDDIIRHYFGPVQGLVAEILLAVAL
MVAAISYIVGLADLLPKMLPIPSCVGRDSLIIITLIILFPVTLIGNLAAF
GPASAIAAAGCYMQAAALVMQLFTSKEWESPPTETWESVNLGGLVYSMPM
ICFVYAFHYVLTETLCELRNATRMRMALVNATTIAIQIGCYIPVALAGFL
IYSGKNITTNAVEGLPPGSIAGFIATWSIGGLLLITYSLFIIPLRQKLEK
KLYGSLTSSMRDVKRIALAAALNIFVGGAALSLPDLGLANSLAGGCIALI
MFFFPGRLMVRFQNEKEFEDRDPLRLVIGGTFVFFGGLICLVGLFGNLVF
DF*
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mRNA from alignment at tig00004418_pilon:2270675..2272158+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5513.t1 ID=Gchil5513.t1|Name=Gchil5513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1484bp|location=Sequence derived from alignment at tig00004418_pilon:2270675..2272158+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGACAACATTGACCGTGATGCTATTTCCGACGCCGCAGAATCGGC
AGGCGCTGAAATGTATTCCACCATCCCGTCGAGTGGTGAGGGCACAGCGC
TTCTTGCAGATGCGGAAGGTGGCGAAAGTCCAACCCTGGTTTCGGACAAG
ACATGGCCGATTCCGGATGGTGCTCCTCCGCCAACAGGCACTATCTTTTC
TTCTGCAATGAATTTGGCGGCATGCGCTTTGGGCGCTTCTATGCTGAGCT
TGCCGTACGCGATGATGATTTCCGGCCCAATCGTGGCGATGCAGTTCATT
GGAATATTTGCTGTGATGGCATTCATCTCGGCTCAGGCTGTCGTGAATGC
TGGTTTAAGGTGCAATAAGAGCTCGTATGATGATATCATCAGGCATTACT
TTGGTCCCGTGCAGGGTTTGGTGGCAGAAATTCTTCTCGCTGTCGCTCTT
ATGGTCGCCGCTATCTCTTACATCGTGGGTCTAGCAGATCTTCTTCCGGT
AAGTTATATGGTCCTAAGTAGTAAGGGTGCTGAACGGCGGGTTTGTGACC
GCTATAGAGAACGTGACCAGAAGCACTAACGGCTTTTTCCGTGTATTTCT
TGTGTCATTCTTGCTTGCTACAGAAAATGCTTCCTATTCCGTCCTGCGTT
GGACGTGACAGTCTCATTATCATAACTCTTATCATTCTATTTCCGGTGAC
ACTCATTGGAAATCTGGCGGCTTTTGGTCCGGCATCTGCCATTGCGGCCG
CCGGCTGCTACATGCAAGCAGCTGCACTTGTAATGCAGTTGTTCACCAGC
AAGGAGTGGGAATCACCCCCAACAGAGACATGGGAGTCAGTGAACCTTGG
AGGCCTAGTGTACTCCATGCCCATGATTTGCTTTGTTTACGCCTTTCATT
ATGTGTTGACTGAAACTCTGTGTGAACTGAGGAATGCGACTCGCATGCGC
ATGGCGCTTGTGAACGCGACGACGATTGCAATCCAAATCGGTTGCTATAT
CCCGGTGGCGCTTGCTGGATTCTTGATCTACAGTGGTAAGAACATCACCA
CGAACGCCGTGGAAGGGCTGCCCCCCGGTTCGATTGCTGGCTTTATTGCC
ACGTGGTCCATTGGCGGTCTTCTTCTGATCACGTACTCGCTGTTCATCAT
TCCGTTGCGTCAGAAGCTGGAGAAGAAGCTGTACGGATCGCTGACTTCAT
CGATGAGGGATGTGAAGCGTATCGCGCTAGCTGCAGCACTGAACATATTT
GTTGGCGGGGCTGCGCTGTCTTTGCCGGACTTGGGCTTGGCTAATTCGCT
GGCGGGAGGATGCATTGCGCTCATCATGTTCTTTTTCCCTGGAAGACTGA
TGGTGCGCTTCCAGAACGAGAAGGAATTCGAAGATCGAGACCCGCTGCGA
TTGGTAATTGGGGGCACGTTTGTGTTTTTCGGCGGATTGATTTGCCTCGT
CGGTTTGTTTGGCAACCTGGTTTTCGACTTCTAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:2270675..2272158+

>Gchil5513.t1 ID=Gchil5513.t1|Name=Gchil5513.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1359bp|location=Sequence derived from alignment at tig00004418_pilon:2270675..2272158+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGACAACATTGACCGTGATGCTATTTCCGACGCCGCAGAATCGGC
AGGCGCTGAAATGTATTCCACCATCCCGTCGAGTGGTGAGGGCACAGCGC
TTCTTGCAGATGCGGAAGGTGGCGAAAGTCCAACCCTGGTTTCGGACAAG
ACATGGCCGATTCCGGATGGTGCTCCTCCGCCAACAGGCACTATCTTTTC
TTCTGCAATGAATTTGGCGGCATGCGCTTTGGGCGCTTCTATGCTGAGCT
TGCCGTACGCGATGATGATTTCCGGCCCAATCGTGGCGATGCAGTTCATT
GGAATATTTGCTGTGATGGCATTCATCTCGGCTCAGGCTGTCGTGAATGC
TGGTTTAAGGTGCAATAAGAGCTCGTATGATGATATCATCAGGCATTACT
TTGGTCCCGTGCAGGGTTTGGTGGCAGAAATTCTTCTCGCTGTCGCTCTT
ATGGTCGCCGCTATCTCTTACATCGTGGGTCTAGCAGATCTTCTTCCGAA
AATGCTTCCTATTCCGTCCTGCGTTGGACGTGACAGTCTCATTATCATAA
CTCTTATCATTCTATTTCCGGTGACACTCATTGGAAATCTGGCGGCTTTT
GGTCCGGCATCTGCCATTGCGGCCGCCGGCTGCTACATGCAAGCAGCTGC
ACTTGTAATGCAGTTGTTCACCAGCAAGGAGTGGGAATCACCCCCAACAG
AGACATGGGAGTCAGTGAACCTTGGAGGCCTAGTGTACTCCATGCCCATG
ATTTGCTTTGTTTACGCCTTTCATTATGTGTTGACTGAAACTCTGTGTGA
ACTGAGGAATGCGACTCGCATGCGCATGGCGCTTGTGAACGCGACGACGA
TTGCAATCCAAATCGGTTGCTATATCCCGGTGGCGCTTGCTGGATTCTTG
ATCTACAGTGGTAAGAACATCACCACGAACGCCGTGGAAGGGCTGCCCCC
CGGTTCGATTGCTGGCTTTATTGCCACGTGGTCCATTGGCGGTCTTCTTC
TGATCACGTACTCGCTGTTCATCATTCCGTTGCGTCAGAAGCTGGAGAAG
AAGCTGTACGGATCGCTGACTTCATCGATGAGGGATGTGAAGCGTATCGC
GCTAGCTGCAGCACTGAACATATTTGTTGGCGGGGCTGCGCTGTCTTTGC
CGGACTTGGGCTTGGCTAATTCGCTGGCGGGAGGATGCATTGCGCTCATC
ATGTTCTTTTTCCCTGGAAGACTGATGGTGCGCTTCCAGAACGAGAAGGA
ATTCGAAGATCGAGACCCGCTGCGATTGGTAATTGGGGGCACGTTTGTGT
TTTTCGGCGGATTGATTTGCCTCGTCGGTTTGTTTGGCAACCTGGTTTTC
GACTTCTAG
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