Gchil5501.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5501.t1
Unique Name	Gchil5501.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	792

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:2162082..2164457 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	5.23e-22
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5501	Gchil5501	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 2162082..2164457 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5501.t1.start1	Gchil5501.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 2162082..2162084 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5501.t1.CDS1	Gchil5501.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 2162082..2164457 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5501.t1.exon1	Gchil5501.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 2162082..2164457 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5501.t1.stop1	Gchil5501.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 2164455..2164457 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5501.t1	Gchil5501.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 2162082..2164457 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:2162082..2164457+
coding sequence from alignment at tig00004418_pilon:2162082..2164457+

mRNA sequence

>Gchil5501.t1 ID=Gchil5501.t1|Name=Gchil5501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=792bp
MTFHRLSAAAACLASLLAFAAASTSHRQITFSPKGPGRPDFVPPQIDAPA
LLSQPTTLDPSLTDPAPAPEQPAEQDAALDSDAVDSSAQQQPQAPSAAAP
PTPPSSPTPAELTPNLTPTPLATPAAAPPSSERAPTSTGPGSGQGFFPCH
PNKGRKQTEVTCSHVRMPPAFCSRCALKPVTAQGQFKRCDDIFELETPQC
EQALDEYVTLNGVCDPARTQDVAAWKAGDSSAAVQLDFFLYSVCELCCDC
IPMGISADDYTPLSAAHTPQNPALWAADRGNCPAHAQYDLCNVLPSVQSI
IKPGDLEIETFPVCPTLGQWLNSGRSTNWQINPDATIDPSIRSFLDGTLA
ALECDNEAIWKTCYQMEDLQNHIDIPDDVDAVSDVDTLPPSAGTDPTPVT
PAGATSSEPAVAADPAVAADPAVVADPAVAADPAVAADPAVVADPAVVAD
PAVVADPAVAADPAVAADPAVAADPAVAATPAPAAEIVDSDVDKDSGSVI
APVASVSTPATAPITSTAPSTPTTPTATTTTTTNTTTTTTNSPATPSTLN
SPTVPVTSAPSIPSSSDGTPTLVDTAEGAPVTVDGQENGIYGSRSPSPSS
DGGSCFPSSATVELLSGLHIPMHQLRIGDRVRVSADEFSDVYMFSHRDPT
ASDSSYVGIITSETSVTMTAGHYLPVMKNATGRGHAFMQAASVEIGDRVQ
LASGAWSVVNNVLLEKESGLFNPHTFTGTICVNGVVSSTFTHSISADAAQ
ALLSPVRALYWVGIARERLIGKWFVHGVDRSLTGFAQAFHL*

spliced messenger RNA

>Gchil5501.t1 ID=Gchil5501.t1|Name=Gchil5501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2376bp|location=Sequence derived from alignment at tig00004418_pilon:2162082..2164457+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTTCCACCGCCTTTCTGCCGCCGCCGCCTGTCTTGCTTCTTTGCT
CGCTTTCGCCGCCGCCAGCACGTCGCACCGACAGATAACGTTTTCACCAA
AGGGTCCCGGCCGCCCCGACTTTGTCCCCCCTCAAATTGACGCTCCCGCT
CTCTTATCCCAACCCACCACTTTGGACCCCTCGTTGACCGATCCCGCTCC
CGCTCCCGAGCAGCCGGCCGAACAGGATGCTGCCCTCGACTCGGACGCCG
TTGACTCGTCTGCCCAGCAGCAGCCTCAAGCCCCTTCAGCCGCAGCACCG
CCCACCCCGCCCTCGTCCCCGACACCAGCTGAACTCACTCCGAACCTGAC
CCCTACGCCGCTTGCCACCCCTGCCGCCGCGCCCCCATCGTCTGAGCGAG
CTCCAACCTCAACCGGCCCGGGCAGCGGTCAGGGTTTCTTCCCCTGCCAC
CCCAACAAGGGCAGAAAGCAGACCGAGGTCACTTGCTCCCACGTCCGCAT
GCCTCCGGCGTTCTGCTCGCGTTGCGCCTTGAAGCCGGTAACCGCTCAAG
GCCAGTTCAAGCGCTGTGATGACATTTTCGAGCTCGAGACACCCCAGTGT
GAGCAGGCACTCGACGAATACGTCACGCTCAATGGTGTGTGTGACCCGGC
CAGGACGCAGGATGTTGCCGCGTGGAAGGCCGGAGATTCTTCCGCTGCCG
TCCAGCTCGACTTCTTTCTATACTCCGTTTGCGAGCTTTGTTGTGATTGT
ATCCCCATGGGTATCTCCGCTGATGATTACACGCCTCTGAGCGCTGCGCA
CACCCCTCAAAACCCCGCGCTCTGGGCAGCTGATAGGGGAAACTGCCCGG
CTCATGCTCAATACGATCTCTGCAACGTTCTCCCAAGCGTACAATCTATC
ATCAAGCCGGGCGACCTGGAAATTGAAACCTTCCCGGTTTGCCCAACTTT
GGGCCAGTGGCTCAACTCAGGTCGATCCACAAATTGGCAGATAAACCCAG
ATGCTACCATTGACCCCTCCATCAGATCTTTCTTGGATGGCACCCTGGCA
GCCTTAGAGTGTGACAACGAAGCCATTTGGAAAACCTGTTACCAAATGGA
GGACCTGCAAAATCACATTGACATTCCCGATGATGTTGATGCCGTTTCTG
ACGTGGACACTCTCCCGCCGAGTGCTGGCACCGACCCCACACCCGTCACT
CCCGCTGGTGCCACTTCTTCTGAACCCGCTGTCGCCGCAGACCCTGCTGT
CGCCGCAGACCCTGCTGTCGTCGCAGACCCTGCTGTCGCCGCAGACCCTG
CTGTCGCCGCAGACCCTGCTGTCGTCGCAGACCCTGCTGTCGTCGCAGAC
CCTGCTGTCGTCGCAGACCCTGCTGTCGCCGCAGACCCTGCTGTCGCCGC
AGACCCTGCTGTCGCCGCAGACCCTGCTGTCGCCGCGACCCCCGCACCCG
CAGCAGAGATTGTCGATTCCGACGTTGACAAAGATTCTGGGTCTGTCATC
GCCCCGGTTGCATCCGTGTCTACACCGGCTACCGCTCCTATTACATCGAC
AGCTCCTAGCACTCCTACTACACCAACTGCTACTACAACTACTACCACTA
ATACTACCACTACTACTACAAACTCTCCTGCCACACCAAGTACTCTCAAC
TCTCCAACTGTCCCGGTCACTTCTGCACCGTCTATTCCGTCTTCCAGCGA
TGGCACGCCAACTCTCGTCGATACGGCTGAAGGGGCCCCGGTGACTGTGG
ATGGTCAAGAGAATGGAATATACGGCTCCCGGTCTCCTTCTCCGTCGAGC
GATGGAGGCTCCTGCTTCCCGTCCTCCGCTACAGTTGAACTGCTCTCTGG
GTTGCACATTCCAATGCACCAGCTCAGAATTGGAGATCGTGTTCGCGTAT
CAGCTGATGAGTTTTCAGATGTTTACATGTTCTCGCACCGCGACCCTACA
GCTTCAGATTCGTCGTACGTTGGCATCATCACCTCGGAGACTTCAGTGAC
CATGACAGCAGGACATTATCTTCCGGTTATGAAGAATGCCACTGGAAGAG
GACACGCCTTTATGCAGGCCGCATCCGTCGAGATTGGCGATCGTGTACAA
CTTGCCTCTGGGGCGTGGTCGGTCGTAAACAATGTATTGCTGGAGAAAGA
AAGTGGTTTGTTCAACCCTCATACATTTACCGGTACCATTTGCGTGAACG
GCGTGGTGTCATCAACATTTACGCATTCTATATCGGCAGATGCCGCTCAA
GCGTTACTCTCACCGGTCAGAGCTCTGTATTGGGTCGGAATTGCTCGTGA
GCGACTCATAGGAAAATGGTTTGTCCATGGTGTTGATCGAAGTTTGACAG
GGTTTGCTCAAGCTTTTCACTTGTGA

protein sequence of Gchil5501.t1

>Gchil5501.t1 ID=Gchil5501.t1|Name=Gchil5501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=792bp
MTFHRLSAAAACLASLLAFAAASTSHRQITFSPKGPGRPDFVPPQIDAPA
LLSQPTTLDPSLTDPAPAPEQPAEQDAALDSDAVDSSAQQQPQAPSAAAP
PTPPSSPTPAELTPNLTPTPLATPAAAPPSSERAPTSTGPGSGQGFFPCH
PNKGRKQTEVTCSHVRMPPAFCSRCALKPVTAQGQFKRCDDIFELETPQC
EQALDEYVTLNGVCDPARTQDVAAWKAGDSSAAVQLDFFLYSVCELCCDC
IPMGISADDYTPLSAAHTPQNPALWAADRGNCPAHAQYDLCNVLPSVQSI
IKPGDLEIETFPVCPTLGQWLNSGRSTNWQINPDATIDPSIRSFLDGTLA
ALECDNEAIWKTCYQMEDLQNHIDIPDDVDAVSDVDTLPPSAGTDPTPVT
PAGATSSEPAVAADPAVAADPAVVADPAVAADPAVAADPAVVADPAVVAD
PAVVADPAVAADPAVAADPAVAADPAVAATPAPAAEIVDSDVDKDSGSVI
APVASVSTPATAPITSTAPSTPTTPTATTTTTTNTTTTTTNSPATPSTLN
SPTVPVTSAPSIPSSSDGTPTLVDTAEGAPVTVDGQENGIYGSRSPSPSS
DGGSCFPSSATVELLSGLHIPMHQLRIGDRVRVSADEFSDVYMFSHRDPT
ASDSSYVGIITSETSVTMTAGHYLPVMKNATGRGHAFMQAASVEIGDRVQ
LASGAWSVVNNVLLEKESGLFNPHTFTGTICVNGVVSSTFTHSISADAAQ
ALLSPVRALYWVGIARERLIGKWFVHGVDRSLTGFAQAFHL*

mRNA from alignment at tig00004418_pilon:2162082..2164457+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5501.t1 ID=Gchil5501.t1|Name=Gchil5501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2376bp|location=Sequence derived from alignment at tig00004418_pilon:2162082..2164457+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTTCCACCGCCTTTCTGCCGCCGCCGCCTGTCTTGCTTCTTTGCT
CGCTTTCGCCGCCGCCAGCACGTCGCACCGACAGATAACGTTTTCACCAA
AGGGTCCCGGCCGCCCCGACTTTGTCCCCCCTCAAATTGACGCTCCCGCT
CTCTTATCCCAACCCACCACTTTGGACCCCTCGTTGACCGATCCCGCTCC
CGCTCCCGAGCAGCCGGCCGAACAGGATGCTGCCCTCGACTCGGACGCCG
TTGACTCGTCTGCCCAGCAGCAGCCTCAAGCCCCTTCAGCCGCAGCACCG
CCCACCCCGCCCTCGTCCCCGACACCAGCTGAACTCACTCCGAACCTGAC
CCCTACGCCGCTTGCCACCCCTGCCGCCGCGCCCCCATCGTCTGAGCGAG
CTCCAACCTCAACCGGCCCGGGCAGCGGTCAGGGTTTCTTCCCCTGCCAC
CCCAACAAGGGCAGAAAGCAGACCGAGGTCACTTGCTCCCACGTCCGCAT
GCCTCCGGCGTTCTGCTCGCGTTGCGCCTTGAAGCCGGTAACCGCTCAAG
GCCAGTTCAAGCGCTGTGATGACATTTTCGAGCTCGAGACACCCCAGTGT
GAGCAGGCACTCGACGAATACGTCACGCTCAATGGTGTGTGTGACCCGGC
CAGGACGCAGGATGTTGCCGCGTGGAAGGCCGGAGATTCTTCCGCTGCCG
TCCAGCTCGACTTCTTTCTATACTCCGTTTGCGAGCTTTGTTGTGATTGT
ATCCCCATGGGTATCTCCGCTGATGATTACACGCCTCTGAGCGCTGCGCA
CACCCCTCAAAACCCCGCGCTCTGGGCAGCTGATAGGGGAAACTGCCCGG
CTCATGCTCAATACGATCTCTGCAACGTTCTCCCAAGCGTACAATCTATC
ATCAAGCCGGGCGACCTGGAAATTGAAACCTTCCCGGTTTGCCCAACTTT
GGGCCAGTGGCTCAACTCAGGTCGATCCACAAATTGGCAGATAAACCCAG
ATGCTACCATTGACCCCTCCATCAGATCTTTCTTGGATGGCACCCTGGCA
GCCTTAGAGTGTGACAACGAAGCCATTTGGAAAACCTGTTACCAAATGGA
GGACCTGCAAAATCACATTGACATTCCCGATGATGTTGATGCCGTTTCTG
ACGTGGACACTCTCCCGCCGAGTGCTGGCACCGACCCCACACCCGTCACT
CCCGCTGGTGCCACTTCTTCTGAACCCGCTGTCGCCGCAGACCCTGCTGT
CGCCGCAGACCCTGCTGTCGTCGCAGACCCTGCTGTCGCCGCAGACCCTG
CTGTCGCCGCAGACCCTGCTGTCGTCGCAGACCCTGCTGTCGTCGCAGAC
CCTGCTGTCGTCGCAGACCCTGCTGTCGCCGCAGACCCTGCTGTCGCCGC
AGACCCTGCTGTCGCCGCAGACCCTGCTGTCGCCGCGACCCCCGCACCCG
CAGCAGAGATTGTCGATTCCGACGTTGACAAAGATTCTGGGTCTGTCATC
GCCCCGGTTGCATCCGTGTCTACACCGGCTACCGCTCCTATTACATCGAC
AGCTCCTAGCACTCCTACTACACCAACTGCTACTACAACTACTACCACTA
ATACTACCACTACTACTACAAACTCTCCTGCCACACCAAGTACTCTCAAC
TCTCCAACTGTCCCGGTCACTTCTGCACCGTCTATTCCGTCTTCCAGCGA
TGGCACGCCAACTCTCGTCGATACGGCTGAAGGGGCCCCGGTGACTGTGG
ATGGTCAAGAGAATGGAATATACGGCTCCCGGTCTCCTTCTCCGTCGAGC
GATGGAGGCTCCTGCTTCCCGTCCTCCGCTACAGTTGAACTGCTCTCTGG
GTTGCACATTCCAATGCACCAGCTCAGAATTGGAGATCGTGTTCGCGTAT
CAGCTGATGAGTTTTCAGATGTTTACATGTTCTCGCACCGCGACCCTACA
GCTTCAGATTCGTCGTACGTTGGCATCATCACCTCGGAGACTTCAGTGAC
CATGACAGCAGGACATTATCTTCCGGTTATGAAGAATGCCACTGGAAGAG
GACACGCCTTTATGCAGGCCGCATCCGTCGAGATTGGCGATCGTGTACAA
CTTGCCTCTGGGGCGTGGTCGGTCGTAAACAATGTATTGCTGGAGAAAGA
AAGTGGTTTGTTCAACCCTCATACATTTACCGGTACCATTTGCGTGAACG
GCGTGGTGTCATCAACATTTACGCATTCTATATCGGCAGATGCCGCTCAA
GCGTTACTCTCACCGGTCAGAGCTCTGTATTGGGTCGGAATTGCTCGTGA
GCGACTCATAGGAAAATGGTTTGTCCATGGTGTTGATCGAAGTTTGACAG
GGTTTGCTCAAGCTTTTCACTTGTGA

Coding sequence (CDS) from alignment at tig00004418_pilon:2162082..2164457+

>Gchil5501.t1 ID=Gchil5501.t1|Name=Gchil5501.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2376bp|location=Sequence derived from alignment at tig00004418_pilon:2162082..2164457+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTTCCACCGCCTTTCTGCCGCCGCCGCCTGTCTTGCTTCTTTGCT
CGCTTTCGCCGCCGCCAGCACGTCGCACCGACAGATAACGTTTTCACCAA
AGGGTCCCGGCCGCCCCGACTTTGTCCCCCCTCAAATTGACGCTCCCGCT
CTCTTATCCCAACCCACCACTTTGGACCCCTCGTTGACCGATCCCGCTCC
CGCTCCCGAGCAGCCGGCCGAACAGGATGCTGCCCTCGACTCGGACGCCG
TTGACTCGTCTGCCCAGCAGCAGCCTCAAGCCCCTTCAGCCGCAGCACCG
CCCACCCCGCCCTCGTCCCCGACACCAGCTGAACTCACTCCGAACCTGAC
CCCTACGCCGCTTGCCACCCCTGCCGCCGCGCCCCCATCGTCTGAGCGAG
CTCCAACCTCAACCGGCCCGGGCAGCGGTCAGGGTTTCTTCCCCTGCCAC
CCCAACAAGGGCAGAAAGCAGACCGAGGTCACTTGCTCCCACGTCCGCAT
GCCTCCGGCGTTCTGCTCGCGTTGCGCCTTGAAGCCGGTAACCGCTCAAG
GCCAGTTCAAGCGCTGTGATGACATTTTCGAGCTCGAGACACCCCAGTGT
GAGCAGGCACTCGACGAATACGTCACGCTCAATGGTGTGTGTGACCCGGC
CAGGACGCAGGATGTTGCCGCGTGGAAGGCCGGAGATTCTTCCGCTGCCG
TCCAGCTCGACTTCTTTCTATACTCCGTTTGCGAGCTTTGTTGTGATTGT
ATCCCCATGGGTATCTCCGCTGATGATTACACGCCTCTGAGCGCTGCGCA
CACCCCTCAAAACCCCGCGCTCTGGGCAGCTGATAGGGGAAACTGCCCGG
CTCATGCTCAATACGATCTCTGCAACGTTCTCCCAAGCGTACAATCTATC
ATCAAGCCGGGCGACCTGGAAATTGAAACCTTCCCGGTTTGCCCAACTTT
GGGCCAGTGGCTCAACTCAGGTCGATCCACAAATTGGCAGATAAACCCAG
ATGCTACCATTGACCCCTCCATCAGATCTTTCTTGGATGGCACCCTGGCA
GCCTTAGAGTGTGACAACGAAGCCATTTGGAAAACCTGTTACCAAATGGA
GGACCTGCAAAATCACATTGACATTCCCGATGATGTTGATGCCGTTTCTG
ACGTGGACACTCTCCCGCCGAGTGCTGGCACCGACCCCACACCCGTCACT
CCCGCTGGTGCCACTTCTTCTGAACCCGCTGTCGCCGCAGACCCTGCTGT
CGCCGCAGACCCTGCTGTCGTCGCAGACCCTGCTGTCGCCGCAGACCCTG
CTGTCGCCGCAGACCCTGCTGTCGTCGCAGACCCTGCTGTCGTCGCAGAC
CCTGCTGTCGTCGCAGACCCTGCTGTCGCCGCAGACCCTGCTGTCGCCGC
AGACCCTGCTGTCGCCGCAGACCCTGCTGTCGCCGCGACCCCCGCACCCG
CAGCAGAGATTGTCGATTCCGACGTTGACAAAGATTCTGGGTCTGTCATC
GCCCCGGTTGCATCCGTGTCTACACCGGCTACCGCTCCTATTACATCGAC
AGCTCCTAGCACTCCTACTACACCAACTGCTACTACAACTACTACCACTA
ATACTACCACTACTACTACAAACTCTCCTGCCACACCAAGTACTCTCAAC
TCTCCAACTGTCCCGGTCACTTCTGCACCGTCTATTCCGTCTTCCAGCGA
TGGCACGCCAACTCTCGTCGATACGGCTGAAGGGGCCCCGGTGACTGTGG
ATGGTCAAGAGAATGGAATATACGGCTCCCGGTCTCCTTCTCCGTCGAGC
GATGGAGGCTCCTGCTTCCCGTCCTCCGCTACAGTTGAACTGCTCTCTGG
GTTGCACATTCCAATGCACCAGCTCAGAATTGGAGATCGTGTTCGCGTAT
CAGCTGATGAGTTTTCAGATGTTTACATGTTCTCGCACCGCGACCCTACA
GCTTCAGATTCGTCGTACGTTGGCATCATCACCTCGGAGACTTCAGTGAC
CATGACAGCAGGACATTATCTTCCGGTTATGAAGAATGCCACTGGAAGAG
GACACGCCTTTATGCAGGCCGCATCCGTCGAGATTGGCGATCGTGTACAA
CTTGCCTCTGGGGCGTGGTCGGTCGTAAACAATGTATTGCTGGAGAAAGA
AAGTGGTTTGTTCAACCCTCATACATTTACCGGTACCATTTGCGTGAACG
GCGTGGTGTCATCAACATTTACGCATTCTATATCGGCAGATGCCGCTCAA
GCGTTACTCTCACCGGTCAGAGCTCTGTATTGGGTCGGAATTGCTCGTGA
GCGACTCATAGGAAAATGGTTTGTCCATGGTGTTGATCGAAGTTTGACAG
GGTTTGCTCAAGCTTTTCACTTGTGA