Gchil5491.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5491.t1
Unique Name	Gchil5491.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:2114614..2115747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65071.PYU1_T007099
PFAMs	Ank_5,IQ,SAM_1
Max annot lvl	121069\|Pythiales
Evalue	0.000225
EggNOG OGs	COG4281@1\|root,KOG0817@2759\|Eukaryota,1MDNX@121069\|Pythiales
Description	Ankyrin repeat-rich vertebrate. Source PGD
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5491	Gchil5491	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 2114614..2115747 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5491.t1.start1	Gchil5491.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 2114614..2114616 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5491.t1.CDS1	Gchil5491.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 2114614..2115747 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5491.t1.exon1	Gchil5491.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 2114614..2115747 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5491.t1.stop1	Gchil5491.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 2115745..2115747 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5491.t1	Gchil5491.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 2114614..2115747 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:2114614..2115747+
coding sequence from alignment at tig00004418_pilon:2114614..2115747+

mRNA sequence

>Gchil5491.t1 ID=Gchil5491.t1|Name=Gchil5491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=378bp
MIAKPDSDGPPELEDFFNPAIRDVGKKGNPIKLGTGRSSLKEGNAYEATK
IAVGTALGSVQDPHLVHVTFGPLVDPALVKDALEEKLQHKQIIARMVDKK
GASDIIEVLFLQGGDRSAINMAIATETVTADMDTALQKAAASAAQQAVKD
LSDPQLCTFLIFAHTPGSLDAARKGFDVALPGVIAYGGPAVSPDGNWSLF
AQQNFCDDPMEKQTVLCAAVSGSLPFLLSAVIKNWAQPVYTEALSYMTPQ
YVGDPERDLLVAIRYNDWDKFLSCIEGNEVSVDVKWPDKQNQTPLLAACA
RARVRMVQYLLEKGADVSHRNDGGFTAIMYTRMLSDYDADIVRQQLDMLK
NAGAEIQLSAHELTLLRRVTRGRVVEP*

spliced messenger RNA

>Gchil5491.t1 ID=Gchil5491.t1|Name=Gchil5491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004418_pilon:2114614..2115747+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCCAAACCCGACTCCGACGGACCTCCGGAGCTGGAAGACTTCTT
CAACCCTGCTATCCGTGATGTCGGCAAGAAAGGCAATCCAATTAAGTTGG
GAACAGGACGTTCAAGTTTAAAGGAAGGAAATGCTTACGAAGCCACTAAA
ATAGCAGTAGGCACTGCCTTGGGCAGTGTTCAAGATCCTCATCTTGTGCA
CGTTACCTTTGGTCCTTTGGTTGATCCAGCTCTTGTGAAGGATGCATTAG
AGGAAAAACTACAACACAAACAAATTATTGCGAGGATGGTGGATAAAAAG
GGAGCCTCTGATATAATTGAAGTACTGTTTCTCCAAGGCGGTGACAGATC
TGCCATCAATATGGCAATTGCGACTGAAACTGTTACCGCCGATATGGATA
CTGCCTTGCAGAAAGCTGCCGCCAGTGCAGCTCAGCAAGCTGTCAAAGAC
CTCAGTGATCCACAGCTGTGTACTTTCCTAATTTTTGCACATACACCAGG
ATCCCTTGATGCGGCGAGGAAAGGTTTTGATGTAGCGCTGCCTGGAGTTA
TAGCATACGGAGGCCCAGCCGTCAGTCCAGACGGAAACTGGAGCCTCTTC
GCACAGCAAAATTTCTGCGATGATCCAATGGAAAAACAGACCGTTCTTTG
CGCGGCTGTATCTGGCTCTCTTCCTTTCTTGCTTTCCGCAGTGATCAAAA
ATTGGGCGCAACCGGTGTACACAGAAGCACTTTCTTACATGACGCCTCAG
TACGTTGGAGATCCAGAACGGGACTTGCTCGTGGCTATTCGATATAATGA
CTGGGATAAGTTCTTATCTTGTATTGAGGGAAATGAAGTATCCGTTGATG
TGAAATGGCCTGATAAACAAAATCAGACTCCCTTGCTGGCGGCGTGCGCT
AGGGCTAGAGTTAGAATGGTTCAATACCTCTTAGAAAAGGGCGCCGATGT
GTCACATAGAAATGATGGCGGCTTCACGGCCATAATGTACACTAGAATGC
TGTCGGATTATGATGCAGATATTGTTCGTCAGCAGTTGGATATGCTGAAG
AATGCAGGAGCAGAGATACAGCTCAGTGCTCACGAGCTGACATTATTGAG
ACGGGTTACTCGAGGTCGTGTTGTTGAGCCCTAA

protein sequence of Gchil5491.t1

>Gchil5491.t1 ID=Gchil5491.t1|Name=Gchil5491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=378bp
MIAKPDSDGPPELEDFFNPAIRDVGKKGNPIKLGTGRSSLKEGNAYEATK
IAVGTALGSVQDPHLVHVTFGPLVDPALVKDALEEKLQHKQIIARMVDKK
GASDIIEVLFLQGGDRSAINMAIATETVTADMDTALQKAAASAAQQAVKD
LSDPQLCTFLIFAHTPGSLDAARKGFDVALPGVIAYGGPAVSPDGNWSLF
AQQNFCDDPMEKQTVLCAAVSGSLPFLLSAVIKNWAQPVYTEALSYMTPQ
YVGDPERDLLVAIRYNDWDKFLSCIEGNEVSVDVKWPDKQNQTPLLAACA
RARVRMVQYLLEKGADVSHRNDGGFTAIMYTRMLSDYDADIVRQQLDMLK
NAGAEIQLSAHELTLLRRVTRGRVVEP*

mRNA from alignment at tig00004418_pilon:2114614..2115747+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5491.t1 ID=Gchil5491.t1|Name=Gchil5491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004418_pilon:2114614..2115747+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCCAAACCCGACTCCGACGGACCTCCGGAGCTGGAAGACTTCTT
CAACCCTGCTATCCGTGATGTCGGCAAGAAAGGCAATCCAATTAAGTTGG
GAACAGGACGTTCAAGTTTAAAGGAAGGAAATGCTTACGAAGCCACTAAA
ATAGCAGTAGGCACTGCCTTGGGCAGTGTTCAAGATCCTCATCTTGTGCA
CGTTACCTTTGGTCCTTTGGTTGATCCAGCTCTTGTGAAGGATGCATTAG
AGGAAAAACTACAACACAAACAAATTATTGCGAGGATGGTGGATAAAAAG
GGAGCCTCTGATATAATTGAAGTACTGTTTCTCCAAGGCGGTGACAGATC
TGCCATCAATATGGCAATTGCGACTGAAACTGTTACCGCCGATATGGATA
CTGCCTTGCAGAAAGCTGCCGCCAGTGCAGCTCAGCAAGCTGTCAAAGAC
CTCAGTGATCCACAGCTGTGTACTTTCCTAATTTTTGCACATACACCAGG
ATCCCTTGATGCGGCGAGGAAAGGTTTTGATGTAGCGCTGCCTGGAGTTA
TAGCATACGGAGGCCCAGCCGTCAGTCCAGACGGAAACTGGAGCCTCTTC
GCACAGCAAAATTTCTGCGATGATCCAATGGAAAAACAGACCGTTCTTTG
CGCGGCTGTATCTGGCTCTCTTCCTTTCTTGCTTTCCGCAGTGATCAAAA
ATTGGGCGCAACCGGTGTACACAGAAGCACTTTCTTACATGACGCCTCAG
TACGTTGGAGATCCAGAACGGGACTTGCTCGTGGCTATTCGATATAATGA
CTGGGATAAGTTCTTATCTTGTATTGAGGGAAATGAAGTATCCGTTGATG
TGAAATGGCCTGATAAACAAAATCAGACTCCCTTGCTGGCGGCGTGCGCT
AGGGCTAGAGTTAGAATGGTTCAATACCTCTTAGAAAAGGGCGCCGATGT
GTCACATAGAAATGATGGCGGCTTCACGGCCATAATGTACACTAGAATGC
TGTCGGATTATGATGCAGATATTGTTCGTCAGCAGTTGGATATGCTGAAG
AATGCAGGAGCAGAGATACAGCTCAGTGCTCACGAGCTGACATTATTGAG
ACGGGTTACTCGAGGTCGTGTTGTTGAGCCCTAA

Coding sequence (CDS) from alignment at tig00004418_pilon:2114614..2115747+

>Gchil5491.t1 ID=Gchil5491.t1|Name=Gchil5491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00004418_pilon:2114614..2115747+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCCAAACCCGACTCCGACGGACCTCCGGAGCTGGAAGACTTCTT
CAACCCTGCTATCCGTGATGTCGGCAAGAAAGGCAATCCAATTAAGTTGG
GAACAGGACGTTCAAGTTTAAAGGAAGGAAATGCTTACGAAGCCACTAAA
ATAGCAGTAGGCACTGCCTTGGGCAGTGTTCAAGATCCTCATCTTGTGCA
CGTTACCTTTGGTCCTTTGGTTGATCCAGCTCTTGTGAAGGATGCATTAG
AGGAAAAACTACAACACAAACAAATTATTGCGAGGATGGTGGATAAAAAG
GGAGCCTCTGATATAATTGAAGTACTGTTTCTCCAAGGCGGTGACAGATC
TGCCATCAATATGGCAATTGCGACTGAAACTGTTACCGCCGATATGGATA
CTGCCTTGCAGAAAGCTGCCGCCAGTGCAGCTCAGCAAGCTGTCAAAGAC
CTCAGTGATCCACAGCTGTGTACTTTCCTAATTTTTGCACATACACCAGG
ATCCCTTGATGCGGCGAGGAAAGGTTTTGATGTAGCGCTGCCTGGAGTTA
TAGCATACGGAGGCCCAGCCGTCAGTCCAGACGGAAACTGGAGCCTCTTC
GCACAGCAAAATTTCTGCGATGATCCAATGGAAAAACAGACCGTTCTTTG
CGCGGCTGTATCTGGCTCTCTTCCTTTCTTGCTTTCCGCAGTGATCAAAA
ATTGGGCGCAACCGGTGTACACAGAAGCACTTTCTTACATGACGCCTCAG
TACGTTGGAGATCCAGAACGGGACTTGCTCGTGGCTATTCGATATAATGA
CTGGGATAAGTTCTTATCTTGTATTGAGGGAAATGAAGTATCCGTTGATG
TGAAATGGCCTGATAAACAAAATCAGACTCCCTTGCTGGCGGCGTGCGCT
AGGGCTAGAGTTAGAATGGTTCAATACCTCTTAGAAAAGGGCGCCGATGT
GTCACATAGAAATGATGGCGGCTTCACGGCCATAATGTACACTAGAATGC
TGTCGGATTATGATGCAGATATTGTTCGTCAGCAGTTGGATATGCTGAAG
AATGCAGGAGCAGAGATACAGCTCAGTGCTCACGAGCTGACATTATTGAG
ACGGGTTACTCGAGGTCGTGTTGTTGAGCCCTAA