Gchil548.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil548.t1
Unique NameGchil548.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:68129..69976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ32307
PFAMsFGGY_C,FGGY_N
Max annot lvl33090|Viridiplantae
Evalue1.02e-36
EggNOG OGsCOG0554@1|root,KOG2517@2759|Eukaryota,388QP@33090|Viridiplantae,3GPN1@35493|Streptophyta
DescriptionFGGY family of carbohydrate kinases, N-terminal domain
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil548Gchil548Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 68129..69976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil548.t1Gchil548.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 68129..69976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil548.t1.stop1Gchil548.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 68129..68131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil548.t1.CDS1Gchil548.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 68129..69659 -
Gchil548.t1.CDS2Gchil548.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 69739..69787 -
Gchil548.t1.CDS3Gchil548.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 69916..69976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil548.t1.exon1Gchil548.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 68129..69659 -
Gchil548.t1.exon2Gchil548.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 69739..69787 -
Gchil548.t1.exon3Gchil548.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 69916..69976 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil548.t1.intron1Gchil548.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 69660..69738 -
Gchil548.t1.intron2Gchil548.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 69788..69915 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil548.t1.start1Gchil548.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 69974..69976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil548.t1 ID=Gchil548.t1|Name=Gchil548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=547bp
MVSSEAFGPSSVQPLLLFGEVMVPDMLLEAQGLDLRITIEEMLPFVTSPY
LLWGQNETLQNAIRLRTLRPKSLPTSMKDDFIIAVDVGTSGTKAGVYQPA
YDSLLKVSRHSHVTHSGTLTVTQSPSNWRSATLAACADVFPSTGHVSAIS
ITGQMQDLIGHGTVPNLLNDKALLYSDARAVDEATRLSHMTRTRILPTDL
LPKLALLPSPSRQEYRIMLGGADFVCYELAGCPDRHFTDATTATTTGLTQ
QPYRSYNTTLFEQAGLASFLPLLPEILPRPGIVGHLSPQMARMLGQPEAA
GIPVIHAGGDAFSATVGAGCDEIGSGYYVYGGSSGWVGQTLRVGERKGPG
LELSHAADERAVILVGSVAAIGACVSHTCEALLNCTVKDFDMLASGSEIG
ASGLVYVPYITGRRCPPADAVGALYGLTAATDRRDVARAVTEGLVFALAD
ASGGMRNDGVEIVGGVGASSVFVNGIKALFGGARLGEPDVGVKGAGVIGA
RVVGLNIANRQKRTYNLASEEDQQKWLQAFRKWKCVVSRVERLWTP*
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spliced messenger RNA

>Gchil548.t1 ID=Gchil548.t1|Name=Gchil548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00004380_pilon:68129..69976- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCCTCCGAGGCATTCGGACCGTCCTCGGTACAGCCTCTATTGCT
ATTCGGCGAGGTTATGGTTCCGGACATGTTACTCGAAGCGCAAGGCTTGG
ATCTCAGGATAACTATTGAAGAAATGCTTCCCTTCGTCACGTCCCCTTAT
CTCCTATGGGGACAAAACGAAACTCTTCAAAATGCCATTCGTTTAAGAAC
ATTGCGACCGAAATCCTTGCCGACATCGATGAAGGATGACTTTATAATTG
CTGTGGATGTTGGAACGTCCGGAACTAAGGCCGGTGTGTATCAACCGGCA
TATGATAGTCTTTTGAAAGTATCTCGTCATTCGCACGTAACTCATAGTGG
TACTCTCACGGTGACGCAAAGTCCTTCAAATTGGCGGTCAGCAACGCTTG
CCGCTTGCGCCGATGTTTTCCCAAGTACAGGTCACGTTTCAGCTATCAGC
ATCACAGGCCAAATGCAAGACCTCATCGGACATGGAACTGTGCCAAATCT
GCTGAATGACAAGGCTCTGTTGTACTCCGATGCCCGAGCAGTCGATGAAG
CGACAAGACTATCTCACATGACGAGAACACGCATATTGCCAACGGACCTT
CTGCCCAAACTTGCTTTATTGCCCTCACCTTCTAGGCAAGAGTATAGAAT
AATGTTGGGTGGGGCAGATTTTGTCTGTTACGAACTGGCGGGTTGTCCTG
ATCGTCATTTCACTGATGCAACAACGGCGACTACGACAGGATTGACACAA
CAACCATATCGCTCCTACAACACGACTCTCTTTGAGCAGGCAGGGCTCGC
GTCATTCCTTCCTCTGCTGCCTGAAATTTTGCCACGTCCTGGGATCGTAG
GACATTTAAGTCCTCAAATGGCCCGGATGCTAGGGCAACCCGAAGCTGCA
GGTATACCAGTGATTCATGCTGGCGGAGACGCATTCTCGGCAACCGTTGG
AGCCGGATGTGATGAGATCGGGTCAGGGTATTACGTTTACGGCGGAAGCA
GTGGCTGGGTCGGGCAAACATTACGTGTCGGAGAGAGAAAAGGTCCCGGA
CTTGAGCTTTCGCATGCAGCAGATGAAAGGGCTGTCATTCTGGTAGGATC
GGTCGCGGCAATCGGAGCATGTGTGTCTCACACTTGCGAGGCCTTATTGA
ACTGCACGGTCAAGGACTTTGACATGCTTGCCAGTGGGAGCGAAATCGGA
GCTTCGGGGCTTGTCTACGTGCCCTACATTACGGGCAGACGATGCCCACC
TGCTGATGCTGTAGGAGCGCTATATGGCCTCACGGCAGCAACTGATAGAC
GCGATGTAGCAAGGGCTGTTACGGAGGGCTTAGTTTTCGCGCTGGCAGAC
GCGTCAGGTGGCATGAGAAACGACGGCGTAGAGATTGTTGGAGGAGTAGG
GGCAAGTTCAGTTTTTGTCAATGGTATCAAAGCCCTGTTCGGTGGAGCGC
GTTTAGGTGAACCTGACGTTGGTGTCAAAGGGGCCGGTGTTATTGGCGCT
AGAGTCGTTGGCTTAAACATTGCGAATCGTCAAAAGAGAACTTACAACTT
GGCTTCCGAGGAGGATCAACAAAAGTGGTTACAAGCATTCCGCAAATGGA
AATGTGTAGTCTCTCGTGTGGAGCGTCTATGGACTCCGTAG
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protein sequence of Gchil548.t1

>Gchil548.t1 ID=Gchil548.t1|Name=Gchil548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=547bp
MVSSEAFGPSSVQPLLLFGEVMVPDMLLEAQGLDLRITIEEMLPFVTSPY
LLWGQNETLQNAIRLRTLRPKSLPTSMKDDFIIAVDVGTSGTKAGVYQPA
YDSLLKVSRHSHVTHSGTLTVTQSPSNWRSATLAACADVFPSTGHVSAIS
ITGQMQDLIGHGTVPNLLNDKALLYSDARAVDEATRLSHMTRTRILPTDL
LPKLALLPSPSRQEYRIMLGGADFVCYELAGCPDRHFTDATTATTTGLTQ
QPYRSYNTTLFEQAGLASFLPLLPEILPRPGIVGHLSPQMARMLGQPEAA
GIPVIHAGGDAFSATVGAGCDEIGSGYYVYGGSSGWVGQTLRVGERKGPG
LELSHAADERAVILVGSVAAIGACVSHTCEALLNCTVKDFDMLASGSEIG
ASGLVYVPYITGRRCPPADAVGALYGLTAATDRRDVARAVTEGLVFALAD
ASGGMRNDGVEIVGGVGASSVFVNGIKALFGGARLGEPDVGVKGAGVIGA
RVVGLNIANRQKRTYNLASEEDQQKWLQAFRKWKCVVSRVERLWTP*
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mRNA from alignment at tig00004380_pilon:68129..69976-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil548.t1 ID=Gchil548.t1|Name=Gchil548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00004380_pilon:68129..69976- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTCCTCCGAGGCATTCGGACCGTCCTCGGTACAGCCTCTATTGCT
ATTCGGCGAGGGTATGTACAATACGCCGAAAGTACGAAAACTATACAGGG
GTGACCGTTGTATCCGAAAAACACTCAAATTCAAAACTCTCAGATTTCGC
TCATTTGCCTGGTTGTGGATCGATGGACATCGGTTTCAGTTATGGTTCCG
GACATGTTACTCGAAGCGCAAGGCTTGGATCTCAGGATGTGAGAACATTG
TTTTGGGTACTTGGCGTAAAGAAAGACGTGGTTCATTCTGCAATTCTGCG
CCATTTTTCCAATATAGAACTATTGAAGAAATGCTTCCCTTCGTCACGTC
CCCTTATCTCCTATGGGGACAAAACGAAACTCTTCAAAATGCCATTCGTT
TAAGAACATTGCGACCGAAATCCTTGCCGACATCGATGAAGGATGACTTT
ATAATTGCTGTGGATGTTGGAACGTCCGGAACTAAGGCCGGTGTGTATCA
ACCGGCATATGATAGTCTTTTGAAAGTATCTCGTCATTCGCACGTAACTC
ATAGTGGTACTCTCACGGTGACGCAAAGTCCTTCAAATTGGCGGTCAGCA
ACGCTTGCCGCTTGCGCCGATGTTTTCCCAAGTACAGGTCACGTTTCAGC
TATCAGCATCACAGGCCAAATGCAAGACCTCATCGGACATGGAACTGTGC
CAAATCTGCTGAATGACAAGGCTCTGTTGTACTCCGATGCCCGAGCAGTC
GATGAAGCGACAAGACTATCTCACATGACGAGAACACGCATATTGCCAAC
GGACCTTCTGCCCAAACTTGCTTTATTGCCCTCACCTTCTAGGCAAGAGT
ATAGAATAATGTTGGGTGGGGCAGATTTTGTCTGTTACGAACTGGCGGGT
TGTCCTGATCGTCATTTCACTGATGCAACAACGGCGACTACGACAGGATT
GACACAACAACCATATCGCTCCTACAACACGACTCTCTTTGAGCAGGCAG
GGCTCGCGTCATTCCTTCCTCTGCTGCCTGAAATTTTGCCACGTCCTGGG
ATCGTAGGACATTTAAGTCCTCAAATGGCCCGGATGCTAGGGCAACCCGA
AGCTGCAGGTATACCAGTGATTCATGCTGGCGGAGACGCATTCTCGGCAA
CCGTTGGAGCCGGATGTGATGAGATCGGGTCAGGGTATTACGTTTACGGC
GGAAGCAGTGGCTGGGTCGGGCAAACATTACGTGTCGGAGAGAGAAAAGG
TCCCGGACTTGAGCTTTCGCATGCAGCAGATGAAAGGGCTGTCATTCTGG
TAGGATCGGTCGCGGCAATCGGAGCATGTGTGTCTCACACTTGCGAGGCC
TTATTGAACTGCACGGTCAAGGACTTTGACATGCTTGCCAGTGGGAGCGA
AATCGGAGCTTCGGGGCTTGTCTACGTGCCCTACATTACGGGCAGACGAT
GCCCACCTGCTGATGCTGTAGGAGCGCTATATGGCCTCACGGCAGCAACT
GATAGACGCGATGTAGCAAGGGCTGTTACGGAGGGCTTAGTTTTCGCGCT
GGCAGACGCGTCAGGTGGCATGAGAAACGACGGCGTAGAGATTGTTGGAG
GAGTAGGGGCAAGTTCAGTTTTTGTCAATGGTATCAAAGCCCTGTTCGGT
GGAGCGCGTTTAGGTGAACCTGACGTTGGTGTCAAAGGGGCCGGTGTTAT
TGGCGCTAGAGTCGTTGGCTTAAACATTGCGAATCGTCAAAAGAGAACTT
ACAACTTGGCTTCCGAGGAGGATCAACAAAAGTGGTTACAAGCATTCCGC
AAATGGAAATGTGTAGTCTCTCGTGTGGAGCGTCTATGGACTCCGTAG
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Coding sequence (CDS) from alignment at tig00004380_pilon:68129..69976-

>Gchil548.t1 ID=Gchil548.t1|Name=Gchil548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00004380_pilon:68129..69976- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGTCCTCCGAGGCATTCGGACCGTCCTCGGTACAGCCTCTATTGCT
ATTCGGCGAGGTTATGGTTCCGGACATGTTACTCGAAGCGCAAGGCTTGG
ATCTCAGGATAACTATTGAAGAAATGCTTCCCTTCGTCACGTCCCCTTAT
CTCCTATGGGGACAAAACGAAACTCTTCAAAATGCCATTCGTTTAAGAAC
ATTGCGACCGAAATCCTTGCCGACATCGATGAAGGATGACTTTATAATTG
CTGTGGATGTTGGAACGTCCGGAACTAAGGCCGGTGTGTATCAACCGGCA
TATGATAGTCTTTTGAAAGTATCTCGTCATTCGCACGTAACTCATAGTGG
TACTCTCACGGTGACGCAAAGTCCTTCAAATTGGCGGTCAGCAACGCTTG
CCGCTTGCGCCGATGTTTTCCCAAGTACAGGTCACGTTTCAGCTATCAGC
ATCACAGGCCAAATGCAAGACCTCATCGGACATGGAACTGTGCCAAATCT
GCTGAATGACAAGGCTCTGTTGTACTCCGATGCCCGAGCAGTCGATGAAG
CGACAAGACTATCTCACATGACGAGAACACGCATATTGCCAACGGACCTT
CTGCCCAAACTTGCTTTATTGCCCTCACCTTCTAGGCAAGAGTATAGAAT
AATGTTGGGTGGGGCAGATTTTGTCTGTTACGAACTGGCGGGTTGTCCTG
ATCGTCATTTCACTGATGCAACAACGGCGACTACGACAGGATTGACACAA
CAACCATATCGCTCCTACAACACGACTCTCTTTGAGCAGGCAGGGCTCGC
GTCATTCCTTCCTCTGCTGCCTGAAATTTTGCCACGTCCTGGGATCGTAG
GACATTTAAGTCCTCAAATGGCCCGGATGCTAGGGCAACCCGAAGCTGCA
GGTATACCAGTGATTCATGCTGGCGGAGACGCATTCTCGGCAACCGTTGG
AGCCGGATGTGATGAGATCGGGTCAGGGTATTACGTTTACGGCGGAAGCA
GTGGCTGGGTCGGGCAAACATTACGTGTCGGAGAGAGAAAAGGTCCCGGA
CTTGAGCTTTCGCATGCAGCAGATGAAAGGGCTGTCATTCTGGTAGGATC
GGTCGCGGCAATCGGAGCATGTGTGTCTCACACTTGCGAGGCCTTATTGA
ACTGCACGGTCAAGGACTTTGACATGCTTGCCAGTGGGAGCGAAATCGGA
GCTTCGGGGCTTGTCTACGTGCCCTACATTACGGGCAGACGATGCCCACC
TGCTGATGCTGTAGGAGCGCTATATGGCCTCACGGCAGCAACTGATAGAC
GCGATGTAGCAAGGGCTGTTACGGAGGGCTTAGTTTTCGCGCTGGCAGAC
GCGTCAGGTGGCATGAGAAACGACGGCGTAGAGATTGTTGGAGGAGTAGG
GGCAAGTTCAGTTTTTGTCAATGGTATCAAAGCCCTGTTCGGTGGAGCGC
GTTTAGGTGAACCTGACGTTGGTGTCAAAGGGGCCGGTGTTATTGGCGCT
AGAGTCGTTGGCTTAAACATTGCGAATCGTCAAAAGAGAACTTACAACTT
GGCTTCCGAGGAGGATCAACAAAAGTGGTTACAAGCATTCCGCAAATGGA
AATGTGTAGTCTCTCGTGTGGAGCGTCTATGGACTCCGTAG
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