Gchil5466.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5466.t2
Unique NameGchil5466.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length690
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1934558..1936755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039855.1
PFAMsDynamin_M,Dynamin_N,GED
Max annot lvl2759|Eukaryota
KEGG koko:K14754,ko:K20291
KEGG Pathwayko05162,ko05164,ko05165,map05162,map05164,map05165
Evalue2.37e-121
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
Descriptionmitochondrial fission
COG categoryI
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5466Gchil5466Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1934558..1936755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5466.t2Gchil5466.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1934558..1936755 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5466.t2.stop1Gchil5466.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1934558..1934560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5466.t2.CDS1Gchil5466.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1934558..1936115 -
Gchil5466.t2.CDS2Gchil5466.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1936184..1936554 -
Gchil5466.t2.CDS3Gchil5466.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1936615..1936755 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5466.t2.exon1Gchil5466.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1934558..1936115 -
Gchil5466.t2.exon2Gchil5466.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1936184..1936554 -
Gchil5466.t2.exon3Gchil5466.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1936615..1936755 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5466.t2.intron1Gchil5466.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1936116..1936183 -
Gchil5466.t2.intron2Gchil5466.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1936555..1936614 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5466.t2.start1Gchil5466.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1936753..1936755 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5466.t2 ID=Gchil5466.t2|Name=Gchil5466.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp
MSEPLTDNVARGTRSAMELIYGLRACGVEHDIAIPQVAVIGDQSSGKSSV
LEAICSVPLPRGAGLTTRCAIELRLSSTHPGDLALPPDSEPPKREPFWIS
LISTSLNPKQIPLEGKHELEDAIAARAASLTDSRQGGGFSKERVIVHIAA
TGSPNLTIIDLPGIIRTKTFGDFIPFIPNPFGRDSQDRNTIRQVSELIQG
YAAQERTIMLVVVPATQDVATIEALEWAARYDPAGRRTIGVITKPDLVDK
GAEKEVASVLLNRRKPLKLGYVMMKNRSQIEVQENVSVQQARKNEYEFFA
THPVFSKMKRSYFGVDNLVKKVTSVLVARVHDEVPKMRSEVVQMLEQCTQ
ELQDIGQGAGETPAEANMTLMRIVFEYNNLLTESAAGRYVDKRLWSSRLR
LCTRVRDVYDHFKGEVEGKRPPFDGDSKFIDEVENEIRNSRGRELPGFLN
PRIFESRVARYVEDWRDASNKLVAEVRRLVSEVAVDLLSTLAPEFPGLRN
RMQEIVSEVLHSLEKSARKELTSVFDREVGQPFTMNEQFLTAVNTKRLER
FDAAVVVALSRAGRDPRGNIREKNVSDMLRAWYQSYYCSSSAERVRADAE
DMSTMLGCYWDVSAKRFIDNNVMVIDTTIIRPLAQEIHVPLNELVLKVGT
SQQALENLLQEDPVVTSRRKTLRAKQERLRKAQELLDRF*
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spliced messenger RNA

>Gchil5466.t2 ID=Gchil5466.t2|Name=Gchil5466.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00004418_pilon:1934558..1936755- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGAACCACTGACGGACAATGTTGCTCGCGGCACTCGCTCTGCAAT
GGAGCTGATCTATGGATTGCGTGCGTGTGGGGTAGAGCATGATATAGCCA
TTCCTCAGGTCGCTGTCATTGGAGACCAGAGCTCAGGGAAGTCAAGTGTG
CTAGAAGCAATTTGTTCTGTTCCTCTTCCACGGGGAGCTGGTCTAACAAC
CCGTTGTGCTATCGAACTGCGTCTCTCTAGTACTCACCCTGGAGATTTAG
CATTGCCTCCTGATTCTGAACCCCCGAAGAGAGAACCCTTTTGGATTTCA
TTGATTTCTACTTCCTTGAACCCGAAACAAATTCCATTAGAGGGGAAACA
TGAGCTTGAGGATGCCATAGCAGCCCGTGCAGCATCATTAACTGATTCGA
GGCAAGGCGGAGGCTTTTCGAAGGAGCGAGTGATCGTCCATATCGCTGCG
ACAGGATCTCCCAACCTCACTATCATTGATTTGCCCGGTATTATTCGCAC
AAAGACATTTGGAGATTTCATACCTTTTATACCAAACCCTTTCGGACGAG
ACAGTCAGGATCGTAATACCATCAGACAGGTGTCGGAGCTAATACAGGGA
TATGCCGCTCAAGAGAGAACGATTATGCTCGTAGTTGTGCCTGCTACTCA
AGACGTTGCCACTATTGAAGCTCTTGAGTGGGCAGCGAGGTATGATCCTG
CCGGAAGACGAACTATTGGTGTTATAACAAAACCGGACCTCGTGGATAAA
GGTGCAGAAAAGGAAGTGGCCTCAGTGCTTTTGAATCGCCGTAAACCTCT
AAAACTTGGGTACGTGATGATGAAGAATCGAAGTCAAATTGAGGTACAAG
AAAACGTTTCTGTCCAACAGGCTCGGAAGAACGAGTATGAGTTTTTTGCC
ACCCATCCAGTGTTCTCAAAAATGAAACGATCGTATTTTGGAGTAGATAA
TCTTGTGAAAAAGGTTACGAGCGTTCTTGTTGCTCGAGTTCACGACGAGG
TACCCAAGATGCGTTCAGAAGTTGTTCAAATGCTAGAACAATGCACTCAA
GAGCTTCAAGACATTGGTCAGGGGGCTGGAGAAACGCCGGCTGAAGCGAA
CATGACGCTCATGCGAATTGTTTTCGAATACAACAATCTTCTCACAGAAT
CGGCTGCGGGGCGCTACGTGGACAAACGCTTGTGGTCATCTCGCCTTCGA
CTTTGTACCCGAGTACGTGATGTTTATGACCATTTCAAAGGAGAAGTTGA
AGGGAAACGTCCACCATTTGATGGAGATTCGAAGTTTATTGATGAGGTAG
AGAACGAAATACGCAATTCGCGCGGCAGGGAGTTGCCTGGGTTTTTGAAT
CCTCGCATATTTGAATCTAGGGTCGCCCGCTACGTTGAGGATTGGCGAGA
TGCGTCCAACAAACTCGTTGCAGAGGTTAGACGACTGGTGTCGGAAGTAG
CCGTTGATTTGCTTTCAACTTTGGCTCCAGAGTTTCCAGGACTCAGAAAC
AGAATGCAAGAAATAGTGTCCGAGGTTTTGCATTCACTGGAAAAGAGCGC
CCGAAAGGAACTGACGTCTGTTTTTGACCGTGAAGTAGGCCAGCCATTCA
CCATGAACGAGCAATTCTTGACAGCAGTTAATACTAAGCGTTTGGAACGG
TTCGACGCCGCCGTCGTTGTTGCCCTTTCAAGAGCAGGTCGGGATCCTCG
TGGTAACATTCGCGAAAAGAATGTTTCTGATATGCTTCGTGCTTGGTATC
AGAGTTATTATTGTTCAAGCAGTGCTGAACGTGTTAGGGCCGACGCAGAG
GACATGTCAACCATGCTTGGATGCTATTGGGATGTATCTGCAAAACGCTT
TATCGATAACAATGTTATGGTAATCGACACTACTATAATCAGGCCTCTCG
CACAGGAGATTCATGTTCCCTTAAATGAGCTCGTGTTGAAGGTGGGAACC
TCACAGCAAGCTCTGGAAAATCTGCTTCAGGAGGATCCGGTTGTGACCTC
GAGAAGAAAGACCTTGCGGGCTAAACAAGAAAGACTGAGGAAAGCTCAGG
AGCTTCTTGACAGGTTTTAA
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protein sequence of Gchil5466.t2

>Gchil5466.t2 ID=Gchil5466.t2|Name=Gchil5466.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=690bp
MSEPLTDNVARGTRSAMELIYGLRACGVEHDIAIPQVAVIGDQSSGKSSV
LEAICSVPLPRGAGLTTRCAIELRLSSTHPGDLALPPDSEPPKREPFWIS
LISTSLNPKQIPLEGKHELEDAIAARAASLTDSRQGGGFSKERVIVHIAA
TGSPNLTIIDLPGIIRTKTFGDFIPFIPNPFGRDSQDRNTIRQVSELIQG
YAAQERTIMLVVVPATQDVATIEALEWAARYDPAGRRTIGVITKPDLVDK
GAEKEVASVLLNRRKPLKLGYVMMKNRSQIEVQENVSVQQARKNEYEFFA
THPVFSKMKRSYFGVDNLVKKVTSVLVARVHDEVPKMRSEVVQMLEQCTQ
ELQDIGQGAGETPAEANMTLMRIVFEYNNLLTESAAGRYVDKRLWSSRLR
LCTRVRDVYDHFKGEVEGKRPPFDGDSKFIDEVENEIRNSRGRELPGFLN
PRIFESRVARYVEDWRDASNKLVAEVRRLVSEVAVDLLSTLAPEFPGLRN
RMQEIVSEVLHSLEKSARKELTSVFDREVGQPFTMNEQFLTAVNTKRLER
FDAAVVVALSRAGRDPRGNIREKNVSDMLRAWYQSYYCSSSAERVRADAE
DMSTMLGCYWDVSAKRFIDNNVMVIDTTIIRPLAQEIHVPLNELVLKVGT
SQQALENLLQEDPVVTSRRKTLRAKQERLRKAQELLDRF*
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mRNA from alignment at tig00004418_pilon:1934558..1936755-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5466.t2 ID=Gchil5466.t2|Name=Gchil5466.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2198bp|location=Sequence derived from alignment at tig00004418_pilon:1934558..1936755- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGAACCACTGACGGACAATGTTGCTCGCGGCACTCGCTCTGCAAT
GGAGCTGATCTATGGATTGCGTGCGTGTGGGGTAGAGCATGATATAGCCA
TTCCTCAGGTCGCTGTCATTGGAGACCAGAGCTCAGGGAAGGTAAGACTT
CTTTGAATTTTACTATCAACCAGACCAATAACTGACATCTTCATGGAATA
GTCAAGTGTGCTAGAAGCAATTTGTTCTGTTCCTCTTCCACGGGGAGCTG
GTCTAACAACCCGTTGTGCTATCGAACTGCGTCTCTCTAGTACTCACCCT
GGAGATTTAGCATTGCCTCCTGATTCTGAACCCCCGAAGAGAGAACCCTT
TTGGATTTCATTGATTTCTACTTCCTTGAACCCGAAACAAATTCCATTAG
AGGGGAAACATGAGCTTGAGGATGCCATAGCAGCCCGTGCAGCATCATTA
ACTGATTCGAGGCAAGGCGGAGGCTTTTCGAAGGAGCGAGTGATCGTCCA
TATCGCTGCGACAGGATCTCCCAACCTCACTATCATTGATTTGCCCGGTA
TTATTCGCACAAAGACATTTGGGTACGTCCAAGCCATTAGCGCCAGTCTT
CATTTCTTTCTTTTCACTCGCTGACAAGAAGTATTAACAGAGATTTCATA
CCTTTTATACCAAACCCTTTCGGACGAGACAGTCAGGATCGTAATACCAT
CAGACAGGTGTCGGAGCTAATACAGGGATATGCCGCTCAAGAGAGAACGA
TTATGCTCGTAGTTGTGCCTGCTACTCAAGACGTTGCCACTATTGAAGCT
CTTGAGTGGGCAGCGAGGTATGATCCTGCCGGAAGACGAACTATTGGTGT
TATAACAAAACCGGACCTCGTGGATAAAGGTGCAGAAAAGGAAGTGGCCT
CAGTGCTTTTGAATCGCCGTAAACCTCTAAAACTTGGGTACGTGATGATG
AAGAATCGAAGTCAAATTGAGGTACAAGAAAACGTTTCTGTCCAACAGGC
TCGGAAGAACGAGTATGAGTTTTTTGCCACCCATCCAGTGTTCTCAAAAA
TGAAACGATCGTATTTTGGAGTAGATAATCTTGTGAAAAAGGTTACGAGC
GTTCTTGTTGCTCGAGTTCACGACGAGGTACCCAAGATGCGTTCAGAAGT
TGTTCAAATGCTAGAACAATGCACTCAAGAGCTTCAAGACATTGGTCAGG
GGGCTGGAGAAACGCCGGCTGAAGCGAACATGACGCTCATGCGAATTGTT
TTCGAATACAACAATCTTCTCACAGAATCGGCTGCGGGGCGCTACGTGGA
CAAACGCTTGTGGTCATCTCGCCTTCGACTTTGTACCCGAGTACGTGATG
TTTATGACCATTTCAAAGGAGAAGTTGAAGGGAAACGTCCACCATTTGAT
GGAGATTCGAAGTTTATTGATGAGGTAGAGAACGAAATACGCAATTCGCG
CGGCAGGGAGTTGCCTGGGTTTTTGAATCCTCGCATATTTGAATCTAGGG
TCGCCCGCTACGTTGAGGATTGGCGAGATGCGTCCAACAAACTCGTTGCA
GAGGTTAGACGACTGGTGTCGGAAGTAGCCGTTGATTTGCTTTCAACTTT
GGCTCCAGAGTTTCCAGGACTCAGAAACAGAATGCAAGAAATAGTGTCCG
AGGTTTTGCATTCACTGGAAAAGAGCGCCCGAAAGGAACTGACGTCTGTT
TTTGACCGTGAAGTAGGCCAGCCATTCACCATGAACGAGCAATTCTTGAC
AGCAGTTAATACTAAGCGTTTGGAACGGTTCGACGCCGCCGTCGTTGTTG
CCCTTTCAAGAGCAGGTCGGGATCCTCGTGGTAACATTCGCGAAAAGAAT
GTTTCTGATATGCTTCGTGCTTGGTATCAGAGTTATTATTGTTCAAGCAG
TGCTGAACGTGTTAGGGCCGACGCAGAGGACATGTCAACCATGCTTGGAT
GCTATTGGGATGTATCTGCAAAACGCTTTATCGATAACAATGTTATGGTA
ATCGACACTACTATAATCAGGCCTCTCGCACAGGAGATTCATGTTCCCTT
AAATGAGCTCGTGTTGAAGGTGGGAACCTCACAGCAAGCTCTGGAAAATC
TGCTTCAGGAGGATCCGGTTGTGACCTCGAGAAGAAAGACCTTGCGGGCT
AAACAAGAAAGACTGAGGAAAGCTCAGGAGCTTCTTGACAGGTTTTAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1934558..1936755-

>Gchil5466.t2 ID=Gchil5466.t2|Name=Gchil5466.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2070bp|location=Sequence derived from alignment at tig00004418_pilon:1934558..1936755- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGAACCACTGACGGACAATGTTGCTCGCGGCACTCGCTCTGCAAT
GGAGCTGATCTATGGATTGCGTGCGTGTGGGGTAGAGCATGATATAGCCA
TTCCTCAGGTCGCTGTCATTGGAGACCAGAGCTCAGGGAAGTCAAGTGTG
CTAGAAGCAATTTGTTCTGTTCCTCTTCCACGGGGAGCTGGTCTAACAAC
CCGTTGTGCTATCGAACTGCGTCTCTCTAGTACTCACCCTGGAGATTTAG
CATTGCCTCCTGATTCTGAACCCCCGAAGAGAGAACCCTTTTGGATTTCA
TTGATTTCTACTTCCTTGAACCCGAAACAAATTCCATTAGAGGGGAAACA
TGAGCTTGAGGATGCCATAGCAGCCCGTGCAGCATCATTAACTGATTCGA
GGCAAGGCGGAGGCTTTTCGAAGGAGCGAGTGATCGTCCATATCGCTGCG
ACAGGATCTCCCAACCTCACTATCATTGATTTGCCCGGTATTATTCGCAC
AAAGACATTTGGAGATTTCATACCTTTTATACCAAACCCTTTCGGACGAG
ACAGTCAGGATCGTAATACCATCAGACAGGTGTCGGAGCTAATACAGGGA
TATGCCGCTCAAGAGAGAACGATTATGCTCGTAGTTGTGCCTGCTACTCA
AGACGTTGCCACTATTGAAGCTCTTGAGTGGGCAGCGAGGTATGATCCTG
CCGGAAGACGAACTATTGGTGTTATAACAAAACCGGACCTCGTGGATAAA
GGTGCAGAAAAGGAAGTGGCCTCAGTGCTTTTGAATCGCCGTAAACCTCT
AAAACTTGGGTACGTGATGATGAAGAATCGAAGTCAAATTGAGGTACAAG
AAAACGTTTCTGTCCAACAGGCTCGGAAGAACGAGTATGAGTTTTTTGCC
ACCCATCCAGTGTTCTCAAAAATGAAACGATCGTATTTTGGAGTAGATAA
TCTTGTGAAAAAGGTTACGAGCGTTCTTGTTGCTCGAGTTCACGACGAGG
TACCCAAGATGCGTTCAGAAGTTGTTCAAATGCTAGAACAATGCACTCAA
GAGCTTCAAGACATTGGTCAGGGGGCTGGAGAAACGCCGGCTGAAGCGAA
CATGACGCTCATGCGAATTGTTTTCGAATACAACAATCTTCTCACAGAAT
CGGCTGCGGGGCGCTACGTGGACAAACGCTTGTGGTCATCTCGCCTTCGA
CTTTGTACCCGAGTACGTGATGTTTATGACCATTTCAAAGGAGAAGTTGA
AGGGAAACGTCCACCATTTGATGGAGATTCGAAGTTTATTGATGAGGTAG
AGAACGAAATACGCAATTCGCGCGGCAGGGAGTTGCCTGGGTTTTTGAAT
CCTCGCATATTTGAATCTAGGGTCGCCCGCTACGTTGAGGATTGGCGAGA
TGCGTCCAACAAACTCGTTGCAGAGGTTAGACGACTGGTGTCGGAAGTAG
CCGTTGATTTGCTTTCAACTTTGGCTCCAGAGTTTCCAGGACTCAGAAAC
AGAATGCAAGAAATAGTGTCCGAGGTTTTGCATTCACTGGAAAAGAGCGC
CCGAAAGGAACTGACGTCTGTTTTTGACCGTGAAGTAGGCCAGCCATTCA
CCATGAACGAGCAATTCTTGACAGCAGTTAATACTAAGCGTTTGGAACGG
TTCGACGCCGCCGTCGTTGTTGCCCTTTCAAGAGCAGGTCGGGATCCTCG
TGGTAACATTCGCGAAAAGAATGTTTCTGATATGCTTCGTGCTTGGTATC
AGAGTTATTATTGTTCAAGCAGTGCTGAACGTGTTAGGGCCGACGCAGAG
GACATGTCAACCATGCTTGGATGCTATTGGGATGTATCTGCAAAACGCTT
TATCGATAACAATGTTATGGTAATCGACACTACTATAATCAGGCCTCTCG
CACAGGAGATTCATGTTCCCTTAAATGAGCTCGTGTTGAAGGTGGGAACC
TCACAGCAAGCTCTGGAAAATCTGCTTCAGGAGGATCCGGTTGTGACCTC
GAGAAGAAAGACCTTGCGGGCTAAACAAGAAAGACTGAGGAAAGCTCAGG
AGCTTCTTGACAGGTTTTAA
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