Gchil5460.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5460.t1
Unique NameGchil5460.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1843304..1843837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708760.1
Preferred nameCYP51G1
PFAMsp450
Max annot lvl2759|Eukaryota
KEGG rclassRC01442
KEGG koko:K05917
KEGG ReactionR05640,R05731
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101
GOsGO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0006629,GO:0006694,GO:0008150,GO:0008152,GO:0008202,GO:0008398,GO:0008610,GO:0009058,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016491,GO:0016705,GO:0016709,GO:0032451,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0070988,GO:0071704,GO:0071944,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Evalue1.23e-50
EggNOG OGsCOG2124@1|root,KOG0684@2759|Eukaryota
EC1.14.13.70
Descriptionsterol 14-demethylase activity
COG categoryC
BiGG ReactioniRC1080.CRv4_Au5_s2_g8646_t1
BRITEko00000,ko00001,ko00002,ko00199,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5460Gchil5460Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1843304..1843837 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5460.t1.start1Gchil5460.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1843304..1843306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5460.t1.CDS1Gchil5460.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1843304..1843837 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5460.t1.exon1Gchil5460.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1843304..1843837 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5460.t1.stop1Gchil5460.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1843835..1843837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5460.t1Gchil5460.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1843304..1843837 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5460.t1 ID=Gchil5460.t1|Name=Gchil5460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MVIQEQEEVFKATNGELNYWALTRMDLLHSCMKETLRMHPPLMFLMRKVL
EPLPTLEGRFVIPVGDYVVASPSVTDMLPDVFAEPNKWDLDRFLPPREEE
KVTPYSFFGFGAGGHGWMGEGFAYVQVKTIWSILLKFFDLKAIGNDDPEP
NYDALVVGPAYGKCMVRYKRRAPIDTT*
back to top

spliced messenger RNA

>Gchil5460.t1 ID=Gchil5460.t1|Name=Gchil5460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004418_pilon:1843304..1843837+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATACAAGAGCAAGAAGAGGTCTTCAAAGCTACAAATGGCGAATT
GAACTATTGGGCTCTGACCAGAATGGATCTTCTCCATTCATGTATGAAAG
AAACGTTGAGAATGCACCCACCTTTAATGTTCTTGATGCGAAAGGTACTT
GAGCCACTCCCAACTCTTGAAGGGCGCTTTGTAATCCCAGTAGGTGACTA
CGTCGTTGCTTCTCCTAGCGTGACAGACATGCTTCCCGATGTCTTTGCCG
AACCAAACAAATGGGATCTTGATCGTTTCTTGCCGCCCCGTGAAGAAGAG
AAGGTAACCCCGTATTCTTTTTTTGGTTTCGGTGCAGGCGGTCATGGCTG
GATGGGGGAAGGCTTCGCTTACGTCCAAGTCAAGACGATATGGAGCATTC
TGTTGAAATTTTTTGATTTGAAGGCTATCGGAAATGATGATCCGGAACCT
AATTACGACGCCTTAGTTGTGGGGCCTGCATATGGAAAATGCATGGTAAG
ATACAAACGCAGGGCGCCGATTGATACTACGTGA
back to top

protein sequence of Gchil5460.t1

>Gchil5460.t1 ID=Gchil5460.t1|Name=Gchil5460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MVIQEQEEVFKATNGELNYWALTRMDLLHSCMKETLRMHPPLMFLMRKVL
EPLPTLEGRFVIPVGDYVVASPSVTDMLPDVFAEPNKWDLDRFLPPREEE
KVTPYSFFGFGAGGHGWMGEGFAYVQVKTIWSILLKFFDLKAIGNDDPEP
NYDALVVGPAYGKCMVRYKRRAPIDTT*
back to top

mRNA from alignment at tig00004418_pilon:1843304..1843837+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5460.t1 ID=Gchil5460.t1|Name=Gchil5460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004418_pilon:1843304..1843837+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATACAAGAGCAAGAAGAGGTCTTCAAAGCTACAAATGGCGAATT
GAACTATTGGGCTCTGACCAGAATGGATCTTCTCCATTCATGTATGAAAG
AAACGTTGAGAATGCACCCACCTTTAATGTTCTTGATGCGAAAGGTACTT
GAGCCACTCCCAACTCTTGAAGGGCGCTTTGTAATCCCAGTAGGTGACTA
CGTCGTTGCTTCTCCTAGCGTGACAGACATGCTTCCCGATGTCTTTGCCG
AACCAAACAAATGGGATCTTGATCGTTTCTTGCCGCCCCGTGAAGAAGAG
AAGGTAACCCCGTATTCTTTTTTTGGTTTCGGTGCAGGCGGTCATGGCTG
GATGGGGGAAGGCTTCGCTTACGTCCAAGTCAAGACGATATGGAGCATTC
TGTTGAAATTTTTTGATTTGAAGGCTATCGGAAATGATGATCCGGAACCT
AATTACGACGCCTTAGTTGTGGGGCCTGCATATGGAAAATGCATGGTAAG
ATACAAACGCAGGGCGCCGATTGATACTACGTGA
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:1843304..1843837+

>Gchil5460.t1 ID=Gchil5460.t1|Name=Gchil5460.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00004418_pilon:1843304..1843837+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATACAAGAGCAAGAAGAGGTCTTCAAAGCTACAAATGGCGAATT
GAACTATTGGGCTCTGACCAGAATGGATCTTCTCCATTCATGTATGAAAG
AAACGTTGAGAATGCACCCACCTTTAATGTTCTTGATGCGAAAGGTACTT
GAGCCACTCCCAACTCTTGAAGGGCGCTTTGTAATCCCAGTAGGTGACTA
CGTCGTTGCTTCTCCTAGCGTGACAGACATGCTTCCCGATGTCTTTGCCG
AACCAAACAAATGGGATCTTGATCGTTTCTTGCCGCCCCGTGAAGAAGAG
AAGGTAACCCCGTATTCTTTTTTTGGTTTCGGTGCAGGCGGTCATGGCTG
GATGGGGGAAGGCTTCGCTTACGTCCAAGTCAAGACGATATGGAGCATTC
TGTTGAAATTTTTTGATTTGAAGGCTATCGGAAATGATGATCCGGAACCT
AATTACGACGCCTTAGTTGTGGGGCCTGCATATGGAAAATGCATGGTAAG
ATACAAACGCAGGGCGCCGATTGATACTACGTGA
back to top