Gchil546.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil546.t2
Unique NameGchil546.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length817
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:62838..65288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709134.1
PFAMsAnk_2,Asparaginase,Pkinase,Pkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC02798
KEGG koko:K01424,ko:K13278
KEGG ReactionR00485
KEGG Pathwayko00250,ko00460,ko01100,ko01110,map00250,map00460,map01100,map01110
Evalue9.63e-56
EggNOG OGsCOG0252@1|root,COG0515@1|root,KOG0192@2759|Eukaryota,KOG0503@2759|Eukaryota
EC3.1.1.47,3.1.1.5,3.5.1.1
Descriptionasparagine catabolic process
COG categoryEJ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil546Gchil546Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 62838..65288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t2.stop1Gchil546.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 62838..62840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t2.CDS1Gchil546.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 62838..65288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t2.exon1Gchil546.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 62838..65288 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t2.start1Gchil546.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 65286..65288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil546.t2Gchil546.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 62838..65288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil546.t2 ID=Gchil546.t2|Name=Gchil546.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=817bp
MPPPCTARSRSRPPRASSTLPHRLCPTRSLDLSAPATLARWSELATFGRN
GLSQVSSDDADPSASMESIGFPDTSNRSLYYHADHPSVWIRTSSTLDTAS
IPSSKGPSPALTTKLSTLPPQSVTPTTPAIKTPPASPYASRPSLNDLANS
PGSALQRWQVSELKALKSKFNELDEEGRGFLTRDQFYSLFRSIIRNPQQH
SEESPLYNFAMSLFYSTDEETLGLREFVTGMTILGKGSEEERLRYLFHMY
DTDSSGNLNAAEIEKVFVVMSHFAESHTFKASDSLEAESLTSLRRCTPSD
LHQLSVRTLAEHDLDQDGVIGFEDFAKWCASDPVVKTWLDRLCFDTALGI
ERLKVENEKRMLAKEFESLGIFPTDFWRDHVDPRRSTPMLPPAVAAEAGQ
LPPLTPSPSGHVPEQASVTSNSTHPLSESQASKDSERSSSASYQREQMEF
SSPTRSSRRSRRTLTDRAIGSFEIDFNELKFKRQIGSGSFATVWKCTWLD
SPVAVKVFKSGPQLILNSDGSTIVAPTSLEGASAQGGAPAGRYLQDGESF
EPEFDSMMGNINAGVQNSIAADDGADMAWNRMRFLSEVSLLKSIRHPNCL
LYMGACVDPRYPLCIVSSLINGGSLFELLHGRRRAALNLRQKLQLTKDIA
LGMRYLHGREPLVLHRDLKSQNILVEQQNDGTFKGTIIDFGLSKLNSAQQ
SLVPGGGGLTGSLITMAPEVISGNPYLQQADVYSFGIVCWEIFCGRVPFG
RSVEPVQLMQKVAFRGERPSFERDDEIPSEIKSLIQACWHQQMEMRPHFS
DITETLKNIMELLHFD*
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spliced messenger RNA

>Gchil546.t2 ID=Gchil546.t2|Name=Gchil546.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2451bp|location=Sequence derived from alignment at tig00004380_pilon:62838..65288- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCCCCCTTGCACTGCGCGCTCGCGCTCCCGCCCCCCCCGCGCCTC
CTCGACGCTTCCTCACCGTCTCTGTCCCACTCGCTCGCTCGACCTCTCCG
CCCCCGCCACGCTCGCACGCTGGAGCGAGCTCGCCACATTCGGTCGTAAC
GGTCTCTCGCAGGTTTCCTCCGACGATGCCGACCCCTCCGCCAGTATGGA
GAGCATCGGCTTCCCAGACACTTCCAACCGCTCTCTCTACTACCACGCCG
ACCACCCTTCCGTCTGGATTCGAACCTCTTCTACACTGGACACCGCCTCA
ATCCCCTCTTCCAAAGGGCCAAGCCCAGCCCTCACGACAAAGCTCTCTAC
CCTTCCTCCTCAAAGCGTCACTCCAACCACTCCTGCCATCAAAACCCCAC
CTGCAAGTCCCTACGCCAGCCGCCCAAGCCTCAACGACCTAGCGAATAGC
CCCGGCTCCGCCCTTCAACGCTGGCAAGTCTCTGAACTCAAAGCGCTCAA
GAGCAAGTTCAACGAACTCGATGAAGAGGGTCGTGGCTTCCTCACTCGCG
ACCAATTTTATAGTCTTTTCCGCTCCATAATTAGAAACCCCCAGCAGCAT
TCGGAGGAGTCTCCTCTGTACAACTTTGCCATGTCTCTCTTCTATTCCAC
CGATGAGGAGACCCTTGGCCTCCGCGAATTCGTCACCGGTATGACCATTC
TCGGTAAGGGAAGCGAAGAAGAGCGCCTCCGCTATCTTTTTCATATGTAC
GACACAGACAGCTCTGGCAATCTCAATGCGGCCGAAATCGAAAAGGTTTT
CGTTGTCATGAGCCATTTTGCAGAAAGCCATACTTTTAAGGCTTCTGATT
CCCTGGAAGCTGAGTCCCTCACAAGTCTGCGTCGTTGCACTCCGAGCGAT
CTGCACCAACTCTCCGTGCGCACCCTTGCAGAGCATGACTTGGACCAAGA
CGGTGTCATTGGGTTCGAGGATTTTGCCAAATGGTGCGCGAGTGATCCCG
TCGTCAAGACATGGCTTGACAGACTCTGCTTTGACACCGCCCTTGGTATT
GAACGCCTCAAGGTTGAAAACGAGAAACGTATGCTGGCAAAAGAGTTTGA
GAGTCTCGGCATTTTCCCAACAGACTTTTGGCGCGATCATGTCGATCCCC
GTCGTTCAACTCCAATGCTCCCACCCGCAGTTGCTGCTGAAGCCGGCCAA
CTTCCTCCACTCACCCCTTCGCCGTCAGGACATGTTCCCGAGCAAGCTTC
TGTTACTTCCAACTCTACACACCCACTGTCGGAGTCCCAAGCTTCGAAGG
ATAGTGAGCGCTCGTCCTCCGCATCTTACCAAAGAGAGCAAATGGAATTT
TCTTCTCCGACGCGTAGCAGCCGCCGTTCTCGACGCACCTTGACAGATCG
AGCAATCGGAAGCTTCGAAATTGACTTCAATGAGCTCAAATTCAAGCGCC
AAATCGGAAGTGGCTCATTCGCCACTGTATGGAAGTGCACGTGGCTTGAT
TCTCCAGTTGCTGTCAAGGTCTTCAAATCTGGTCCGCAGCTCATTTTGAA
CAGTGATGGCTCCACTATAGTTGCACCGACTTCGTTGGAAGGCGCTTCAG
CTCAGGGAGGCGCCCCTGCAGGCAGATATCTTCAGGATGGCGAGTCCTTT
GAACCTGAATTCGATAGTATGATGGGAAATATTAATGCTGGCGTTCAAAA
CTCCATTGCAGCGGATGATGGGGCCGATATGGCTTGGAACCGTATGCGCT
TTCTATCAGAGGTTTCCTTGCTGAAATCTATTCGACATCCTAACTGTCTT
TTGTACATGGGTGCCTGCGTGGACCCAAGATATCCCCTTTGCATTGTAAG
TTCCCTGATCAATGGGGGCAGTTTGTTTGAATTGCTACATGGACGGCGGA
GAGCTGCTCTGAACCTGAGACAAAAACTCCAACTCACGAAAGACATCGCC
CTTGGGATGCGGTATTTACATGGGAGAGAACCACTTGTACTTCATCGTGA
CTTGAAGTCCCAGAACATTCTTGTCGAGCAACAAAATGATGGCACTTTCA
AGGGCACTATTATCGATTTTGGTCTTTCCAAGCTTAATTCTGCTCAGCAG
TCACTTGTTCCTGGCGGTGGAGGTCTCACCGGATCTCTGATAACCATGGC
CCCGGAAGTAATAAGCGGCAACCCATACCTGCAGCAAGCGGATGTATATA
GCTTTGGGATTGTCTGTTGGGAAATTTTCTGTGGCAGAGTCCCGTTTGGA
CGATCCGTCGAACCGGTACAGCTTATGCAAAAGGTCGCGTTCAGAGGGGA
AAGACCGTCGTTTGAGCGCGACGACGAAATCCCCTCTGAGATTAAATCAC
TTATACAGGCTTGCTGGCATCAACAAATGGAAATGCGTCCGCACTTTTCT
GATATCACGGAAACACTGAAAAACATCATGGAACTTCTCCATTTCGATTG
A
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protein sequence of Gchil546.t2

>Gchil546.t2 ID=Gchil546.t2|Name=Gchil546.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=817bp
MPPPCTARSRSRPPRASSTLPHRLCPTRSLDLSAPATLARWSELATFGRN
GLSQVSSDDADPSASMESIGFPDTSNRSLYYHADHPSVWIRTSSTLDTAS
IPSSKGPSPALTTKLSTLPPQSVTPTTPAIKTPPASPYASRPSLNDLANS
PGSALQRWQVSELKALKSKFNELDEEGRGFLTRDQFYSLFRSIIRNPQQH
SEESPLYNFAMSLFYSTDEETLGLREFVTGMTILGKGSEEERLRYLFHMY
DTDSSGNLNAAEIEKVFVVMSHFAESHTFKASDSLEAESLTSLRRCTPSD
LHQLSVRTLAEHDLDQDGVIGFEDFAKWCASDPVVKTWLDRLCFDTALGI
ERLKVENEKRMLAKEFESLGIFPTDFWRDHVDPRRSTPMLPPAVAAEAGQ
LPPLTPSPSGHVPEQASVTSNSTHPLSESQASKDSERSSSASYQREQMEF
SSPTRSSRRSRRTLTDRAIGSFEIDFNELKFKRQIGSGSFATVWKCTWLD
SPVAVKVFKSGPQLILNSDGSTIVAPTSLEGASAQGGAPAGRYLQDGESF
EPEFDSMMGNINAGVQNSIAADDGADMAWNRMRFLSEVSLLKSIRHPNCL
LYMGACVDPRYPLCIVSSLINGGSLFELLHGRRRAALNLRQKLQLTKDIA
LGMRYLHGREPLVLHRDLKSQNILVEQQNDGTFKGTIIDFGLSKLNSAQQ
SLVPGGGGLTGSLITMAPEVISGNPYLQQADVYSFGIVCWEIFCGRVPFG
RSVEPVQLMQKVAFRGERPSFERDDEIPSEIKSLIQACWHQQMEMRPHFS
DITETLKNIMELLHFD*
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mRNA from alignment at tig00004380_pilon:62838..65288-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil546.t2 ID=Gchil546.t2|Name=Gchil546.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2451bp|location=Sequence derived from alignment at tig00004380_pilon:62838..65288- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCCCCCTTGCACTGCGCGCTCGCGCTCCCGCCCCCCCCGCGCCTC CTCGACGCTTCCTCACCGTCTCTGTCCCACTCGCTCGCTCGACCTCTCCG CCCCCGCCACGCTCGCACGCTGGAGCGAGCTCGCCACATTCGGTCGTAAC GGTCTCTCGCAGGTTTCCTCCGACGATGCCGACCCCTCCGCCAGTATGGA GAGCATCGGCTTCCCAGACACTTCCAACCGCTCTCTCTACTACCACGCCG ACCACCCTTCCGTCTGGATTCGAACCTCTTCTACACTGGACACCGCCTCA ATCCCCTCTTCCAAAGGGCCAAGCCCAGCCCTCACGACAAAGCTCTCTAC CCTTCCTCCTCAAAGCGTCACTCCAACCACTCCTGCCATCAAAACCCCAC CTGCAAGTCCCTACGCCAGCCGCCCAAGCCTCAACGACCTAGCGAATAGC CCCGGCTCCGCCCTTCAACGCTGGCAAGTCTCTGAACTCAAAGCGCTCAA GAGCAAGTTCAACGAACTCGATGAAGAGGGTCGTGGCTTCCTCACTCGCG ACCAATTTTATAGTCTTTTCCGCTCCATAATTAGAAACCCCCAGCAGCAT TCGGAGGAGTCTCCTCTGTACAACTTTGCCATGTCTCTCTTCTATTCCAC CGATGAGGAGACCCTTGGCCTCCGCGAATTCGTCACCGGTATGACCATTC TCGGTAAGGGAAGCGAAGAAGAGCGCCTCCGCTATCTTTTTCATATGTAC GACACAGACAGCTCTGGCAATCTCAATGCGGCCGAAATCGAAAAGGTTTT CGTTGTCATGAGCCATTTTGCAGAAAGCCATACTTTTAAGGCTTCTGATT CCCTGGAAGCTGAGTCCCTCACAAGTCTGCGTCGTTGCACTCCGAGCGAT CTGCACCAACTCTCCGTGCGCACCCTTGCAGAGCATGACTTGGACCAAGA CGGTGTCATTGGGTTCGAGGATTTTGCCAAATGGTGCGCGAGTGATCCCG TCGTCAAGACATGGCTTGACAGACTCTGCTTTGACACCGCCCTTGGTATT GAACGCCTCAAGGTTGAAAACGAGAAACGTATGCTGGCAAAAGAGTTTGA GAGTCTCGGCATTTTCCCAACAGACTTTTGGCGCGATCATGTCGATCCCC GTCGTTCAACTCCAATGCTCCCACCCGCAGTTGCTGCTGAAGCCGGCCAA CTTCCTCCACTCACCCCTTCGCCGTCAGGACATGTTCCCGAGCAAGCTTC TGTTACTTCCAACTCTACACACCCACTGTCGGAGTCCCAAGCTTCGAAGG ATAGTGAGCGCTCGTCCTCCGCATCTTACCAAAGAGAGCAAATGGAATTT TCTTCTCCGACGCGTAGCAGCCGCCGTTCTCGACGCACCTTGACAGATCG AGCAATCGGAAGCTTCGAAATTGACTTCAATGAGCTCAAATTCAAGCGCC AAATCGGAAGTGGCTCATTCGCCACTGTATGGAAGTGCACGTGGCTTGAT TCTCCAGTTGCTGTCAAGGTCTTCAAATCTGGTCCGCAGCTCATTTTGAA CAGTGATGGCTCCACTATAGTTGCACCGACTTCGTTGGAAGGCGCTTCAG CTCAGGGAGGCGCCCCTGCAGGCAGATATCTTCAGGATGGCGAGTCCTTT GAACCTGAATTCGATAGTATGATGGGAAATATTAATGCTGGCGTTCAAAA CTCCATTGCAGCGGATGATGGGGCCGATATGGCTTGGAACCGTATGCGCT TTCTATCAGAGGTTTCCTTGCTGAAATCTATTCGACATCCTAACTGTCTT TTGTACATGGGTGCCTGCGTGGACCCAAGATATCCCCTTTGCATTGTAAG TTCCCTGATCAATGGGGGCAGTTTGTTTGAATTGCTACATGGACGGCGGA GAGCTGCTCTGAACCTGAGACAAAAACTCCAACTCACGAAAGACATCGCC CTTGGGATGCGGTATTTACATGGGAGAGAACCACTTGTACTTCATCGTGA CTTGAAGTCCCAGAACATTCTTGTCGAGCAACAAAATGATGGCACTTTCA AGGGCACTATTATCGATTTTGGTCTTTCCAAGCTTAATTCTGCTCAGCAG TCACTTGTTCCTGGCGGTGGAGGTCTCACCGGATCTCTGATAACCATGGC CCCGGAAGTAATAAGCGGCAACCCATACCTGCAGCAAGCGGATGTATATA GCTTTGGGATTGTCTGTTGGGAAATTTTCTGTGGCAGAGTCCCGTTTGGA CGATCCGTCGAACCGGTACAGCTTATGCAAAAGGTCGCGTTCAGAGGGGA AAGACCGTCGTTTGAGCGCGACGACGAAATCCCCTCTGAGATTAAATCAC TTATACAGGCTTGCTGGCATCAACAAATGGAAATGCGTCCGCACTTTTCT GATATCACGGAAACACTGAAAAACATCATGGAACTTCTCCATTTCGATTG A
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Coding sequence (CDS) from alignment at tig00004380_pilon:62838..65288-

>Gchil546.t2 ID=Gchil546.t2|Name=Gchil546.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2451bp|location=Sequence derived from alignment at tig00004380_pilon:62838..65288- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCCCCCTTGCACTGCGCGCTCGCGCTCCCGCCCCCCCCGCGCCTC
CTCGACGCTTCCTCACCGTCTCTGTCCCACTCGCTCGCTCGACCTCTCCG
CCCCCGCCACGCTCGCACGCTGGAGCGAGCTCGCCACATTCGGTCGTAAC
GGTCTCTCGCAGGTTTCCTCCGACGATGCCGACCCCTCCGCCAGTATGGA
GAGCATCGGCTTCCCAGACACTTCCAACCGCTCTCTCTACTACCACGCCG
ACCACCCTTCCGTCTGGATTCGAACCTCTTCTACACTGGACACCGCCTCA
ATCCCCTCTTCCAAAGGGCCAAGCCCAGCCCTCACGACAAAGCTCTCTAC
CCTTCCTCCTCAAAGCGTCACTCCAACCACTCCTGCCATCAAAACCCCAC
CTGCAAGTCCCTACGCCAGCCGCCCAAGCCTCAACGACCTAGCGAATAGC
CCCGGCTCCGCCCTTCAACGCTGGCAAGTCTCTGAACTCAAAGCGCTCAA
GAGCAAGTTCAACGAACTCGATGAAGAGGGTCGTGGCTTCCTCACTCGCG
ACCAATTTTATAGTCTTTTCCGCTCCATAATTAGAAACCCCCAGCAGCAT
TCGGAGGAGTCTCCTCTGTACAACTTTGCCATGTCTCTCTTCTATTCCAC
CGATGAGGAGACCCTTGGCCTCCGCGAATTCGTCACCGGTATGACCATTC
TCGGTAAGGGAAGCGAAGAAGAGCGCCTCCGCTATCTTTTTCATATGTAC
GACACAGACAGCTCTGGCAATCTCAATGCGGCCGAAATCGAAAAGGTTTT
CGTTGTCATGAGCCATTTTGCAGAAAGCCATACTTTTAAGGCTTCTGATT
CCCTGGAAGCTGAGTCCCTCACAAGTCTGCGTCGTTGCACTCCGAGCGAT
CTGCACCAACTCTCCGTGCGCACCCTTGCAGAGCATGACTTGGACCAAGA
CGGTGTCATTGGGTTCGAGGATTTTGCCAAATGGTGCGCGAGTGATCCCG
TCGTCAAGACATGGCTTGACAGACTCTGCTTTGACACCGCCCTTGGTATT
GAACGCCTCAAGGTTGAAAACGAGAAACGTATGCTGGCAAAAGAGTTTGA
GAGTCTCGGCATTTTCCCAACAGACTTTTGGCGCGATCATGTCGATCCCC
GTCGTTCAACTCCAATGCTCCCACCCGCAGTTGCTGCTGAAGCCGGCCAA
CTTCCTCCACTCACCCCTTCGCCGTCAGGACATGTTCCCGAGCAAGCTTC
TGTTACTTCCAACTCTACACACCCACTGTCGGAGTCCCAAGCTTCGAAGG
ATAGTGAGCGCTCGTCCTCCGCATCTTACCAAAGAGAGCAAATGGAATTT
TCTTCTCCGACGCGTAGCAGCCGCCGTTCTCGACGCACCTTGACAGATCG
AGCAATCGGAAGCTTCGAAATTGACTTCAATGAGCTCAAATTCAAGCGCC
AAATCGGAAGTGGCTCATTCGCCACTGTATGGAAGTGCACGTGGCTTGAT
TCTCCAGTTGCTGTCAAGGTCTTCAAATCTGGTCCGCAGCTCATTTTGAA
CAGTGATGGCTCCACTATAGTTGCACCGACTTCGTTGGAAGGCGCTTCAG
CTCAGGGAGGCGCCCCTGCAGGCAGATATCTTCAGGATGGCGAGTCCTTT
GAACCTGAATTCGATAGTATGATGGGAAATATTAATGCTGGCGTTCAAAA
CTCCATTGCAGCGGATGATGGGGCCGATATGGCTTGGAACCGTATGCGCT
TTCTATCAGAGGTTTCCTTGCTGAAATCTATTCGACATCCTAACTGTCTT
TTGTACATGGGTGCCTGCGTGGACCCAAGATATCCCCTTTGCATTGTAAG
TTCCCTGATCAATGGGGGCAGTTTGTTTGAATTGCTACATGGACGGCGGA
GAGCTGCTCTGAACCTGAGACAAAAACTCCAACTCACGAAAGACATCGCC
CTTGGGATGCGGTATTTACATGGGAGAGAACCACTTGTACTTCATCGTGA
CTTGAAGTCCCAGAACATTCTTGTCGAGCAACAAAATGATGGCACTTTCA
AGGGCACTATTATCGATTTTGGTCTTTCCAAGCTTAATTCTGCTCAGCAG
TCACTTGTTCCTGGCGGTGGAGGTCTCACCGGATCTCTGATAACCATGGC
CCCGGAAGTAATAAGCGGCAACCCATACCTGCAGCAAGCGGATGTATATA
GCTTTGGGATTGTCTGTTGGGAAATTTTCTGTGGCAGAGTCCCGTTTGGA
CGATCCGTCGAACCGGTACAGCTTATGCAAAAGGTCGCGTTCAGAGGGGA
AAGACCGTCGTTTGAGCGCGACGACGAAATCCCCTCTGAGATTAAATCAC
TTATACAGGCTTGCTGGCATCAACAAATGGAAATGCGTCCGCACTTTTCT
GATATCACGGAAACACTGAAAAACATCATGGAACTTCTCCATTTCGATTG
A
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