Gchil5454.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5454.t1
Unique Name	Gchil5454.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	704

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1775461..1777572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704687.1
Preferred name	TFIP11
PFAMs	G-patch,GCFC,TIP_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13103,ko:K17569
GOs	GO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
Evalue	3.64e-20
EggNOG OGs	KOG2184@1\|root,KOG2184@2759\|Eukaryota
Description	spliceosomal complex disassembly
COG category	A
BRITE	ko00000,ko01009,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5454	Gchil5454	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1775461..1777572 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5454.t1.start1	Gchil5454.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1775461..1775463 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5454.t1.CDS1	Gchil5454.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1775461..1777572 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5454.t1.exon1	Gchil5454.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1775461..1777572 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5454.t1.stop1	Gchil5454.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1777570..1777572 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5454.t1	Gchil5454.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1775461..1777572 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1775461..1777572+
coding sequence from alignment at tig00004418_pilon:1775461..1777572+

mRNA sequence

>Gchil5454.t1 ID=Gchil5454.t1|Name=Gchil5454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=704bp
MEDSSSSSASSSPQRQGLGFSQFPPSSPSTSSASVATSSDGEVPGLSAAF
GGRRSRSKKRRRSPSPGLEQRPGAWEAHTRGIGSKILAKQGFTGRLGRHG
DGIAEPLQPVMRRGKVGLGADQRKEESQKKNRTRNTLHDLDAEIEAANTR
IQSKLKTVSTEKEETSTRMYEPMRHDLKPVSVKVWDEISEKLSGARRTVT
VISPQLMYDLNRLRDTAMSQLSTALRAKQQEEIILQNTASEKEKAQDNLE
RIKAELNELVALENALAGLESPNGVAYERALKKLADTVSQVGDRFHVGRQ
SVSAALAELVCRTVIRSFHECLKNSQKHGKADKKSAGFVGGVLKTVKTII
SSDEYTKLCAVSILGPLRRVFSRTNLDIVRGACIADVLVKIRPMISDALI
QVFAEELLLPRLVAHIKITGRTGEKHVPTHVWIHPWLPVAGRKALVEVLH
HVRISLTSSLEAWKISDSNLQRADLIDITKKWSAVLSRKKLQLALSRHVV
PKLAAALCQIDGNTSEVLVGFEALSDWASVCSSRILAAELAEPFIKGPGT
VLRSTAFKDWEGGRQLYRRWNDCLPSRFKYHFRPVLAALLFVLDAAATAN
QGVRARLLHADITPLLKNRFQKVNEKKTKIARPVVPARRARLVDVVAMVA
EKEGIPLVGLPDERGQRVFKLGRIRITIDVGRGVFLHGGKIVGVDELVEL
AKA*

spliced messenger RNA

>Gchil5454.t1 ID=Gchil5454.t1|Name=Gchil5454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004418_pilon:1775461..1777572+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACTCATCGTCTTCATCTGCTTCATCTTCTCCCCAAAGGCAAGG
TTTGGGCTTCAGCCAGTTTCCGCCTTCTAGTCCTTCTACTTCTTCTGCAA
GCGTAGCTACATCCTCTGACGGTGAGGTGCCCGGCCTCTCGGCTGCATTC
GGTGGACGTCGATCACGCTCCAAGAAACGCCGTCGAAGTCCATCGCCTGG
TCTAGAACAGCGTCCAGGAGCATGGGAGGCACACACGCGTGGAATCGGAT
CGAAAATTCTTGCAAAACAAGGATTTACAGGGAGATTGGGTAGGCATGGA
GATGGAATTGCAGAACCTTTGCAGCCAGTGATGCGAAGAGGGAAGGTTGG
ATTAGGAGCGGATCAAAGAAAAGAGGAGAGCCAGAAAAAGAACAGGACGA
GGAACACTCTCCATGATCTTGACGCGGAGATAGAGGCAGCAAATACGCGC
ATTCAATCTAAACTGAAGACAGTTTCTACTGAGAAAGAAGAGACAAGTAC
ACGCATGTATGAACCCATGCGGCATGACTTAAAACCCGTTTCTGTGAAAG
TGTGGGACGAGATAAGCGAAAAACTGAGCGGAGCACGACGCACTGTTACA
GTCATATCGCCGCAACTCATGTATGATTTGAATCGCCTTCGAGATACGGC
CATGTCACAACTATCCACAGCATTACGTGCAAAGCAACAAGAAGAAATCA
TACTGCAAAATACAGCATCTGAGAAAGAGAAAGCTCAAGATAATTTGGAA
CGGATCAAGGCTGAATTAAATGAACTTGTTGCATTAGAGAATGCTCTCGC
TGGCCTCGAAAGTCCGAATGGTGTTGCGTATGAGCGCGCTTTGAAGAAAT
TAGCGGATACTGTGTCTCAGGTTGGTGACAGGTTTCACGTTGGGAGGCAA
AGTGTATCTGCGGCATTAGCAGAGCTGGTTTGCAGAACTGTGATAAGGTC
TTTTCATGAATGTCTTAAAAACTCTCAAAAACATGGCAAAGCCGATAAGA
AGTCTGCTGGTTTTGTCGGTGGCGTACTTAAGACAGTCAAAACAATAATA
TCCAGTGATGAGTACACGAAACTTTGTGCTGTATCGATTTTGGGACCGTT
ACGGAGGGTGTTTTCACGAACCAATTTGGATATAGTGAGAGGGGCTTGTA
TTGCCGACGTTCTGGTCAAGATTCGTCCAATGATATCAGATGCCTTGATT
CAAGTTTTTGCGGAGGAGCTTCTCCTTCCAAGACTTGTTGCACATATCAA
GATCACCGGTCGTACGGGAGAAAAACATGTACCAACACATGTATGGATTC
ACCCATGGTTACCTGTAGCTGGTCGCAAAGCGTTAGTCGAGGTGCTCCAT
CACGTGCGAATTAGCCTTACTTCATCCCTTGAAGCTTGGAAAATATCAGA
TTCGAATCTGCAACGTGCAGACCTCATTGATATCACGAAAAAGTGGAGCG
CCGTTCTATCGAGGAAAAAACTGCAACTCGCACTTTCACGACACGTGGTG
CCAAAGTTGGCAGCTGCCTTATGTCAGATTGATGGAAACACGTCTGAAGT
GCTTGTCGGTTTCGAAGCGCTTTCAGATTGGGCTTCTGTTTGTTCCAGTA
GAATTCTCGCGGCAGAGCTGGCTGAACCATTCATCAAAGGACCTGGAACC
GTGCTTCGATCCACAGCATTCAAGGATTGGGAAGGTGGAAGGCAATTATA
TCGAAGGTGGAACGACTGTTTACCAAGCCGTTTTAAATATCATTTTCGCC
CTGTCCTTGCAGCACTTCTTTTTGTTTTAGATGCTGCTGCGACTGCCAAC
CAAGGGGTGAGGGCCAGGCTATTGCATGCGGATATAACCCCTCTCTTGAA
GAATCGCTTCCAAAAAGTCAATGAAAAGAAAACAAAGATAGCCCGACCGG
TTGTTCCGGCTAGGAGGGCGAGATTAGTGGATGTCGTCGCCATGGTAGCA
GAGAAGGAAGGTATACCTCTGGTTGGCTTACCGGACGAAAGGGGACAAAG
GGTTTTCAAGCTTGGTCGAATTCGCATCACTATTGACGTTGGAAGGGGAG
TATTTCTGCATGGTGGCAAGATTGTTGGGGTGGATGAGTTGGTCGAGTTG
GCAAAAGCGTGA

protein sequence of Gchil5454.t1

>Gchil5454.t1 ID=Gchil5454.t1|Name=Gchil5454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=704bp
MEDSSSSSASSSPQRQGLGFSQFPPSSPSTSSASVATSSDGEVPGLSAAF
GGRRSRSKKRRRSPSPGLEQRPGAWEAHTRGIGSKILAKQGFTGRLGRHG
DGIAEPLQPVMRRGKVGLGADQRKEESQKKNRTRNTLHDLDAEIEAANTR
IQSKLKTVSTEKEETSTRMYEPMRHDLKPVSVKVWDEISEKLSGARRTVT
VISPQLMYDLNRLRDTAMSQLSTALRAKQQEEIILQNTASEKEKAQDNLE
RIKAELNELVALENALAGLESPNGVAYERALKKLADTVSQVGDRFHVGRQ
SVSAALAELVCRTVIRSFHECLKNSQKHGKADKKSAGFVGGVLKTVKTII
SSDEYTKLCAVSILGPLRRVFSRTNLDIVRGACIADVLVKIRPMISDALI
QVFAEELLLPRLVAHIKITGRTGEKHVPTHVWIHPWLPVAGRKALVEVLH
HVRISLTSSLEAWKISDSNLQRADLIDITKKWSAVLSRKKLQLALSRHVV
PKLAAALCQIDGNTSEVLVGFEALSDWASVCSSRILAAELAEPFIKGPGT
VLRSTAFKDWEGGRQLYRRWNDCLPSRFKYHFRPVLAALLFVLDAAATAN
QGVRARLLHADITPLLKNRFQKVNEKKTKIARPVVPARRARLVDVVAMVA
EKEGIPLVGLPDERGQRVFKLGRIRITIDVGRGVFLHGGKIVGVDELVEL
AKA*

mRNA from alignment at tig00004418_pilon:1775461..1777572+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5454.t1 ID=Gchil5454.t1|Name=Gchil5454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004418_pilon:1775461..1777572+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACTCATCGTCTTCATCTGCTTCATCTTCTCCCCAAAGGCAAGG
TTTGGGCTTCAGCCAGTTTCCGCCTTCTAGTCCTTCTACTTCTTCTGCAA
GCGTAGCTACATCCTCTGACGGTGAGGTGCCCGGCCTCTCGGCTGCATTC
GGTGGACGTCGATCACGCTCCAAGAAACGCCGTCGAAGTCCATCGCCTGG
TCTAGAACAGCGTCCAGGAGCATGGGAGGCACACACGCGTGGAATCGGAT
CGAAAATTCTTGCAAAACAAGGATTTACAGGGAGATTGGGTAGGCATGGA
GATGGAATTGCAGAACCTTTGCAGCCAGTGATGCGAAGAGGGAAGGTTGG
ATTAGGAGCGGATCAAAGAAAAGAGGAGAGCCAGAAAAAGAACAGGACGA
GGAACACTCTCCATGATCTTGACGCGGAGATAGAGGCAGCAAATACGCGC
ATTCAATCTAAACTGAAGACAGTTTCTACTGAGAAAGAAGAGACAAGTAC
ACGCATGTATGAACCCATGCGGCATGACTTAAAACCCGTTTCTGTGAAAG
TGTGGGACGAGATAAGCGAAAAACTGAGCGGAGCACGACGCACTGTTACA
GTCATATCGCCGCAACTCATGTATGATTTGAATCGCCTTCGAGATACGGC
CATGTCACAACTATCCACAGCATTACGTGCAAAGCAACAAGAAGAAATCA
TACTGCAAAATACAGCATCTGAGAAAGAGAAAGCTCAAGATAATTTGGAA
CGGATCAAGGCTGAATTAAATGAACTTGTTGCATTAGAGAATGCTCTCGC
TGGCCTCGAAAGTCCGAATGGTGTTGCGTATGAGCGCGCTTTGAAGAAAT
TAGCGGATACTGTGTCTCAGGTTGGTGACAGGTTTCACGTTGGGAGGCAA
AGTGTATCTGCGGCATTAGCAGAGCTGGTTTGCAGAACTGTGATAAGGTC
TTTTCATGAATGTCTTAAAAACTCTCAAAAACATGGCAAAGCCGATAAGA
AGTCTGCTGGTTTTGTCGGTGGCGTACTTAAGACAGTCAAAACAATAATA
TCCAGTGATGAGTACACGAAACTTTGTGCTGTATCGATTTTGGGACCGTT
ACGGAGGGTGTTTTCACGAACCAATTTGGATATAGTGAGAGGGGCTTGTA
TTGCCGACGTTCTGGTCAAGATTCGTCCAATGATATCAGATGCCTTGATT
CAAGTTTTTGCGGAGGAGCTTCTCCTTCCAAGACTTGTTGCACATATCAA
GATCACCGGTCGTACGGGAGAAAAACATGTACCAACACATGTATGGATTC
ACCCATGGTTACCTGTAGCTGGTCGCAAAGCGTTAGTCGAGGTGCTCCAT
CACGTGCGAATTAGCCTTACTTCATCCCTTGAAGCTTGGAAAATATCAGA
TTCGAATCTGCAACGTGCAGACCTCATTGATATCACGAAAAAGTGGAGCG
CCGTTCTATCGAGGAAAAAACTGCAACTCGCACTTTCACGACACGTGGTG
CCAAAGTTGGCAGCTGCCTTATGTCAGATTGATGGAAACACGTCTGAAGT
GCTTGTCGGTTTCGAAGCGCTTTCAGATTGGGCTTCTGTTTGTTCCAGTA
GAATTCTCGCGGCAGAGCTGGCTGAACCATTCATCAAAGGACCTGGAACC
GTGCTTCGATCCACAGCATTCAAGGATTGGGAAGGTGGAAGGCAATTATA
TCGAAGGTGGAACGACTGTTTACCAAGCCGTTTTAAATATCATTTTCGCC
CTGTCCTTGCAGCACTTCTTTTTGTTTTAGATGCTGCTGCGACTGCCAAC
CAAGGGGTGAGGGCCAGGCTATTGCATGCGGATATAACCCCTCTCTTGAA
GAATCGCTTCCAAAAAGTCAATGAAAAGAAAACAAAGATAGCCCGACCGG
TTGTTCCGGCTAGGAGGGCGAGATTAGTGGATGTCGTCGCCATGGTAGCA
GAGAAGGAAGGTATACCTCTGGTTGGCTTACCGGACGAAAGGGGACAAAG
GGTTTTCAAGCTTGGTCGAATTCGCATCACTATTGACGTTGGAAGGGGAG
TATTTCTGCATGGTGGCAAGATTGTTGGGGTGGATGAGTTGGTCGAGTTG
GCAAAAGCGTGA

Coding sequence (CDS) from alignment at tig00004418_pilon:1775461..1777572+

>Gchil5454.t1 ID=Gchil5454.t1|Name=Gchil5454.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2112bp|location=Sequence derived from alignment at tig00004418_pilon:1775461..1777572+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGACTCATCGTCTTCATCTGCTTCATCTTCTCCCCAAAGGCAAGG
TTTGGGCTTCAGCCAGTTTCCGCCTTCTAGTCCTTCTACTTCTTCTGCAA
GCGTAGCTACATCCTCTGACGGTGAGGTGCCCGGCCTCTCGGCTGCATTC
GGTGGACGTCGATCACGCTCCAAGAAACGCCGTCGAAGTCCATCGCCTGG
TCTAGAACAGCGTCCAGGAGCATGGGAGGCACACACGCGTGGAATCGGAT
CGAAAATTCTTGCAAAACAAGGATTTACAGGGAGATTGGGTAGGCATGGA
GATGGAATTGCAGAACCTTTGCAGCCAGTGATGCGAAGAGGGAAGGTTGG
ATTAGGAGCGGATCAAAGAAAAGAGGAGAGCCAGAAAAAGAACAGGACGA
GGAACACTCTCCATGATCTTGACGCGGAGATAGAGGCAGCAAATACGCGC
ATTCAATCTAAACTGAAGACAGTTTCTACTGAGAAAGAAGAGACAAGTAC
ACGCATGTATGAACCCATGCGGCATGACTTAAAACCCGTTTCTGTGAAAG
TGTGGGACGAGATAAGCGAAAAACTGAGCGGAGCACGACGCACTGTTACA
GTCATATCGCCGCAACTCATGTATGATTTGAATCGCCTTCGAGATACGGC
CATGTCACAACTATCCACAGCATTACGTGCAAAGCAACAAGAAGAAATCA
TACTGCAAAATACAGCATCTGAGAAAGAGAAAGCTCAAGATAATTTGGAA
CGGATCAAGGCTGAATTAAATGAACTTGTTGCATTAGAGAATGCTCTCGC
TGGCCTCGAAAGTCCGAATGGTGTTGCGTATGAGCGCGCTTTGAAGAAAT
TAGCGGATACTGTGTCTCAGGTTGGTGACAGGTTTCACGTTGGGAGGCAA
AGTGTATCTGCGGCATTAGCAGAGCTGGTTTGCAGAACTGTGATAAGGTC
TTTTCATGAATGTCTTAAAAACTCTCAAAAACATGGCAAAGCCGATAAGA
AGTCTGCTGGTTTTGTCGGTGGCGTACTTAAGACAGTCAAAACAATAATA
TCCAGTGATGAGTACACGAAACTTTGTGCTGTATCGATTTTGGGACCGTT
ACGGAGGGTGTTTTCACGAACCAATTTGGATATAGTGAGAGGGGCTTGTA
TTGCCGACGTTCTGGTCAAGATTCGTCCAATGATATCAGATGCCTTGATT
CAAGTTTTTGCGGAGGAGCTTCTCCTTCCAAGACTTGTTGCACATATCAA
GATCACCGGTCGTACGGGAGAAAAACATGTACCAACACATGTATGGATTC
ACCCATGGTTACCTGTAGCTGGTCGCAAAGCGTTAGTCGAGGTGCTCCAT
CACGTGCGAATTAGCCTTACTTCATCCCTTGAAGCTTGGAAAATATCAGA
TTCGAATCTGCAACGTGCAGACCTCATTGATATCACGAAAAAGTGGAGCG
CCGTTCTATCGAGGAAAAAACTGCAACTCGCACTTTCACGACACGTGGTG
CCAAAGTTGGCAGCTGCCTTATGTCAGATTGATGGAAACACGTCTGAAGT
GCTTGTCGGTTTCGAAGCGCTTTCAGATTGGGCTTCTGTTTGTTCCAGTA
GAATTCTCGCGGCAGAGCTGGCTGAACCATTCATCAAAGGACCTGGAACC
GTGCTTCGATCCACAGCATTCAAGGATTGGGAAGGTGGAAGGCAATTATA
TCGAAGGTGGAACGACTGTTTACCAAGCCGTTTTAAATATCATTTTCGCC
CTGTCCTTGCAGCACTTCTTTTTGTTTTAGATGCTGCTGCGACTGCCAAC
CAAGGGGTGAGGGCCAGGCTATTGCATGCGGATATAACCCCTCTCTTGAA
GAATCGCTTCCAAAAAGTCAATGAAAAGAAAACAAAGATAGCCCGACCGG
TTGTTCCGGCTAGGAGGGCGAGATTAGTGGATGTCGTCGCCATGGTAGCA
GAGAAGGAAGGTATACCTCTGGTTGGCTTACCGGACGAAAGGGGACAAAG
GGTTTTCAAGCTTGGTCGAATTCGCATCACTATTGACGTTGGAAGGGGAG
TATTTCTGCATGGTGGCAAGATTGTTGGGGTGGATGAGTTGGTCGAGTTG
GCAAAAGCGTGA