Gchil5451.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5451.t1
Unique NameGchil5451.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1768764..1770155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO98940
PFAMsMyb_DNA-binding
Max annot lvl3041|Chlorophyta
Evalue6.39e-16
EggNOG OGs2C4RN@1|root,2RIEW@2759|Eukaryota,37NY2@33090|Viridiplantae,34NCJ@3041|Chlorophyta
DescriptionMyb-like DNA-binding domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5451Gchil5451Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1768764..1770155 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5451.t1.start1Gchil5451.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1768764..1768766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5451.t1.CDS1Gchil5451.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1768764..1770155 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5451.t1.exon1Gchil5451.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1768764..1770155 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5451.t1.stop1Gchil5451.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1770153..1770155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5451.t1Gchil5451.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1768764..1770155 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5451.t1 ID=Gchil5451.t1|Name=Gchil5451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=464bp
MNLEHPQSSHYVAHQTQQHRQAEHPYPSTWTSSHTPQRYESAQPAAPALP
VVTMNVYAIPFAYTVNNEPLFLQFGSHFAAEAAQSASYLRQRYWQMKTQP
ATREDYAYSAAAVSRPARAFDQMQASATDRYQHYESGSVPRPQPTFEYQY
STGNAEGRAREHNTIVPRSVGNEMNPQPPPLPQRVHREPEVARSVVPDIP
PVQSISAKDGIKNHHVNSAMHPTHVNSNVNYETEDRCSDRSGRGLGVAAN
VLKEQSAHHESNDVRDSSHHPMSIPNVSHPNDVTVKTSNFSESDKPSRSR
GSKRFSDGHSNDTEGRSSKRSRLHWTQELHASFLAAVEKLGIGKAVPTSI
IREMGVEGLTRENVASHLQKHRTSLKKAEDEAEKKELVETLKIFIQSDPN
NPRKGMSDEDVLKEAAARQRLRRNEKETTLKDSVQAIAPHAPKHHTQGTE
RQEPPKAQKRGNR*
back to top

spliced messenger RNA

>Gchil5451.t1 ID=Gchil5451.t1|Name=Gchil5451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004418_pilon:1768764..1770155+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTTGAACACCCACAGTCTTCACATTATGTAGCCCACCAAACACA
GCAACACAGGCAAGCCGAGCATCCGTATCCATCAACCTGGACTTCCTCCC
ACACACCACAACGATACGAATCAGCTCAACCGGCTGCACCAGCGTTACCC
GTCGTAACCATGAACGTTTACGCTATTCCATTTGCATATACAGTGAACAA
CGAGCCGCTCTTCTTGCAATTTGGTAGTCATTTTGCTGCGGAGGCAGCGC
AATCCGCCTCATATCTCCGGCAAAGATATTGGCAAATGAAAACCCAACCG
GCAACCCGAGAGGATTATGCTTATTCTGCGGCGGCCGTCAGTCGTCCTGC
TCGAGCTTTTGACCAAATGCAAGCTTCCGCAACCGATCGTTATCAGCATT
ATGAGTCGGGAAGTGTCCCGCGACCTCAGCCCACGTTCGAATATCAGTAT
TCAACTGGCAATGCAGAAGGAAGAGCGCGGGAGCATAACACAATTGTGCC
TCGTTCAGTAGGGAACGAGATGAACCCGCAACCACCGCCTCTACCTCAAA
GAGTACACCGCGAACCGGAAGTTGCGAGAAGCGTAGTCCCAGATATACCT
CCCGTTCAATCTATTTCAGCTAAAGACGGCATTAAAAACCACCATGTGAA
TTCTGCCATGCACCCAACGCATGTCAATAGCAATGTCAACTACGAAACAG
AGGACCGGTGCAGTGATCGAAGTGGGCGAGGCCTAGGAGTGGCTGCGAAC
GTTCTGAAAGAACAGAGCGCTCACCACGAGAGCAATGACGTTCGAGATTC
TTCTCATCATCCCATGAGTATTCCGAATGTTTCACATCCGAATGATGTAA
CTGTGAAAACATCCAACTTTTCTGAGAGCGACAAACCATCAAGATCGAGA
GGTTCGAAACGTTTTTCAGATGGACATTCTAATGACACAGAGGGGCGGTC
CTCTAAGAGAAGTAGGCTTCACTGGACTCAGGAGCTGCATGCATCTTTTC
TAGCGGCAGTTGAGAAGCTCGGTATAGGAAAGGCAGTGCCGACTTCAATT
ATCCGGGAAATGGGGGTTGAAGGGTTAACCAGAGAAAACGTGGCGTCGCA
TCTACAAAAGCATAGAACTAGCTTGAAGAAGGCCGAGGACGAGGCTGAAA
AGAAAGAGCTTGTAGAGACTTTGAAAATATTCATACAAAGTGACCCCAAT
AACCCACGTAAGGGTATGTCGGATGAAGATGTCTTGAAGGAAGCTGCTGC
TCGGCAAAGATTACGAAGGAACGAGAAAGAAACAACCCTTAAAGATTCGG
TTCAGGCCATTGCACCTCATGCACCCAAGCATCACACACAAGGCACAGAG
CGTCAGGAGCCACCAAAAGCTCAAAAAAGGGGTAATCGCTGA
back to top

protein sequence of Gchil5451.t1

>Gchil5451.t1 ID=Gchil5451.t1|Name=Gchil5451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=464bp
MNLEHPQSSHYVAHQTQQHRQAEHPYPSTWTSSHTPQRYESAQPAAPALP
VVTMNVYAIPFAYTVNNEPLFLQFGSHFAAEAAQSASYLRQRYWQMKTQP
ATREDYAYSAAAVSRPARAFDQMQASATDRYQHYESGSVPRPQPTFEYQY
STGNAEGRAREHNTIVPRSVGNEMNPQPPPLPQRVHREPEVARSVVPDIP
PVQSISAKDGIKNHHVNSAMHPTHVNSNVNYETEDRCSDRSGRGLGVAAN
VLKEQSAHHESNDVRDSSHHPMSIPNVSHPNDVTVKTSNFSESDKPSRSR
GSKRFSDGHSNDTEGRSSKRSRLHWTQELHASFLAAVEKLGIGKAVPTSI
IREMGVEGLTRENVASHLQKHRTSLKKAEDEAEKKELVETLKIFIQSDPN
NPRKGMSDEDVLKEAAARQRLRRNEKETTLKDSVQAIAPHAPKHHTQGTE
RQEPPKAQKRGNR*
back to top

mRNA from alignment at tig00004418_pilon:1768764..1770155+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5451.t1 ID=Gchil5451.t1|Name=Gchil5451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004418_pilon:1768764..1770155+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCTTGAACACCCACAGTCTTCACATTATGTAGCCCACCAAACACA
GCAACACAGGCAAGCCGAGCATCCGTATCCATCAACCTGGACTTCCTCCC
ACACACCACAACGATACGAATCAGCTCAACCGGCTGCACCAGCGTTACCC
GTCGTAACCATGAACGTTTACGCTATTCCATTTGCATATACAGTGAACAA
CGAGCCGCTCTTCTTGCAATTTGGTAGTCATTTTGCTGCGGAGGCAGCGC
AATCCGCCTCATATCTCCGGCAAAGATATTGGCAAATGAAAACCCAACCG
GCAACCCGAGAGGATTATGCTTATTCTGCGGCGGCCGTCAGTCGTCCTGC
TCGAGCTTTTGACCAAATGCAAGCTTCCGCAACCGATCGTTATCAGCATT
ATGAGTCGGGAAGTGTCCCGCGACCTCAGCCCACGTTCGAATATCAGTAT
TCAACTGGCAATGCAGAAGGAAGAGCGCGGGAGCATAACACAATTGTGCC
TCGTTCAGTAGGGAACGAGATGAACCCGCAACCACCGCCTCTACCTCAAA
GAGTACACCGCGAACCGGAAGTTGCGAGAAGCGTAGTCCCAGATATACCT
CCCGTTCAATCTATTTCAGCTAAAGACGGCATTAAAAACCACCATGTGAA
TTCTGCCATGCACCCAACGCATGTCAATAGCAATGTCAACTACGAAACAG
AGGACCGGTGCAGTGATCGAAGTGGGCGAGGCCTAGGAGTGGCTGCGAAC
GTTCTGAAAGAACAGAGCGCTCACCACGAGAGCAATGACGTTCGAGATTC
TTCTCATCATCCCATGAGTATTCCGAATGTTTCACATCCGAATGATGTAA
CTGTGAAAACATCCAACTTTTCTGAGAGCGACAAACCATCAAGATCGAGA
GGTTCGAAACGTTTTTCAGATGGACATTCTAATGACACAGAGGGGCGGTC
CTCTAAGAGAAGTAGGCTTCACTGGACTCAGGAGCTGCATGCATCTTTTC
TAGCGGCAGTTGAGAAGCTCGGTATAGGAAAGGCAGTGCCGACTTCAATT
ATCCGGGAAATGGGGGTTGAAGGGTTAACCAGAGAAAACGTGGCGTCGCA
TCTACAAAAGCATAGAACTAGCTTGAAGAAGGCCGAGGACGAGGCTGAAA
AGAAAGAGCTTGTAGAGACTTTGAAAATATTCATACAAAGTGACCCCAAT
AACCCACGTAAGGGTATGTCGGATGAAGATGTCTTGAAGGAAGCTGCTGC
TCGGCAAAGATTACGAAGGAACGAGAAAGAAACAACCCTTAAAGATTCGG
TTCAGGCCATTGCACCTCATGCACCCAAGCATCACACACAAGGCACAGAG
CGTCAGGAGCCACCAAAAGCTCAAAAAAGGGGTAATCGCTGA
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:1768764..1770155+

>Gchil5451.t1 ID=Gchil5451.t1|Name=Gchil5451.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00004418_pilon:1768764..1770155+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCTTGAACACCCACAGTCTTCACATTATGTAGCCCACCAAACACA
GCAACACAGGCAAGCCGAGCATCCGTATCCATCAACCTGGACTTCCTCCC
ACACACCACAACGATACGAATCAGCTCAACCGGCTGCACCAGCGTTACCC
GTCGTAACCATGAACGTTTACGCTATTCCATTTGCATATACAGTGAACAA
CGAGCCGCTCTTCTTGCAATTTGGTAGTCATTTTGCTGCGGAGGCAGCGC
AATCCGCCTCATATCTCCGGCAAAGATATTGGCAAATGAAAACCCAACCG
GCAACCCGAGAGGATTATGCTTATTCTGCGGCGGCCGTCAGTCGTCCTGC
TCGAGCTTTTGACCAAATGCAAGCTTCCGCAACCGATCGTTATCAGCATT
ATGAGTCGGGAAGTGTCCCGCGACCTCAGCCCACGTTCGAATATCAGTAT
TCAACTGGCAATGCAGAAGGAAGAGCGCGGGAGCATAACACAATTGTGCC
TCGTTCAGTAGGGAACGAGATGAACCCGCAACCACCGCCTCTACCTCAAA
GAGTACACCGCGAACCGGAAGTTGCGAGAAGCGTAGTCCCAGATATACCT
CCCGTTCAATCTATTTCAGCTAAAGACGGCATTAAAAACCACCATGTGAA
TTCTGCCATGCACCCAACGCATGTCAATAGCAATGTCAACTACGAAACAG
AGGACCGGTGCAGTGATCGAAGTGGGCGAGGCCTAGGAGTGGCTGCGAAC
GTTCTGAAAGAACAGAGCGCTCACCACGAGAGCAATGACGTTCGAGATTC
TTCTCATCATCCCATGAGTATTCCGAATGTTTCACATCCGAATGATGTAA
CTGTGAAAACATCCAACTTTTCTGAGAGCGACAAACCATCAAGATCGAGA
GGTTCGAAACGTTTTTCAGATGGACATTCTAATGACACAGAGGGGCGGTC
CTCTAAGAGAAGTAGGCTTCACTGGACTCAGGAGCTGCATGCATCTTTTC
TAGCGGCAGTTGAGAAGCTCGGTATAGGAAAGGCAGTGCCGACTTCAATT
ATCCGGGAAATGGGGGTTGAAGGGTTAACCAGAGAAAACGTGGCGTCGCA
TCTACAAAAGCATAGAACTAGCTTGAAGAAGGCCGAGGACGAGGCTGAAA
AGAAAGAGCTTGTAGAGACTTTGAAAATATTCATACAAAGTGACCCCAAT
AACCCACGTAAGGGTATGTCGGATGAAGATGTCTTGAAGGAAGCTGCTGC
TCGGCAAAGATTACGAAGGAACGAGAAAGAAACAACCCTTAAAGATTCGG
TTCAGGCCATTGCACCTCATGCACCCAAGCATCACACACAAGGCACAGAG
CGTCAGGAGCCACCAAAAGCTCAAAAAAGGGGTAATCGCTGA
back to top