Gchil5449.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5449.t1
Unique Name	Gchil5449.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1763051..1764253 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5449	Gchil5449	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1763051..1764253 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5449.t1.start1	Gchil5449.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1763051..1763053 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5449.t1.CDS1	Gchil5449.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1763051..1764253 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5449.t1.exon1	Gchil5449.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1763051..1764253 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5449.t1.stop1	Gchil5449.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1764251..1764253 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5449.t1	Gchil5449.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1763051..1764253 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1763051..1764253+
coding sequence from alignment at tig00004418_pilon:1763051..1764253+

mRNA sequence

>Gchil5449.t1 ID=Gchil5449.t1|Name=Gchil5449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=401bp
MATFIPEASRSKQAPHLHPVRIAILSFALFAVLMTLRDSGSRTEDVLPNF
SSSSLPLSVDEKTAVDSGVFEDNSENTADSTLSTGEHNDLKPVTANSFHL
NDFKENESFERKNEYQPPPCSQSKPGKQNFLMVFMGHSASSAILSELKQH
SRFFITIPEPIDHPPYEFNTDLGIRYADEFFKNASSTGKISGFKMRPWHI
LHAAGEWKALVIKYNIRLIWQYRINVFKQAVGEYTARYMNDSSAIEGIDH
TMSDEDRCKIGVGCQFRIENVSRLHDLMVNFIENNRQIQDAVHLLSNSNE
EEQCMLPVTYEDYLYGRETTMRKLLKFLDADYEDHAPFRKKATSDNMCYA
LLNFHEEICDAFFRCSKWRSMLHDPRNLCTCSLSKGIGASTSRSFCPEVR
*

spliced messenger RNA

>Gchil5449.t1 ID=Gchil5449.t1|Name=Gchil5449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004418_pilon:1763051..1764253+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACTTTCATACCGGAGGCCAGTCGTTCAAAACAGGCACCGCATCT
TCATCCCGTTCGCATTGCCATTCTGTCATTTGCGCTCTTTGCTGTGCTTA
TGACTTTGCGAGATTCTGGATCACGCACTGAGGATGTTCTTCCTAATTTC
TCGAGCAGTAGTCTTCCATTATCCGTGGATGAGAAGACTGCAGTCGATTC
TGGTGTCTTTGAAGACAACTCAGAGAACACCGCAGACTCCACACTCAGCA
CTGGTGAACACAATGACCTCAAACCGGTTACAGCCAATTCCTTTCACTTA
AACGATTTCAAAGAGAACGAATCTTTTGAACGCAAAAATGAGTATCAGCC
TCCTCCGTGCAGCCAGTCTAAACCGGGAAAACAAAACTTTTTGATGGTAT
TCATGGGACACAGTGCTTCTTCGGCCATTTTGTCTGAACTCAAGCAGCAC
TCGCGGTTCTTTATCACCATACCAGAACCAATAGACCACCCGCCGTATGA
GTTTAATACCGACTTGGGAATCCGATATGCAGACGAATTCTTTAAGAACG
CGTCTTCGACGGGGAAAATATCGGGGTTCAAGATGCGTCCATGGCACATT
TTGCACGCGGCTGGAGAATGGAAAGCTCTTGTCATCAAATACAACATAAG
ATTAATATGGCAGTACAGGATTAATGTCTTTAAGCAAGCCGTAGGTGAGT
ACACAGCAAGGTATATGAACGATAGCTCAGCTATTGAAGGGATTGATCAC
ACAATGTCTGACGAGGATCGCTGCAAAATTGGTGTGGGTTGTCAGTTTCG
AATTGAAAACGTTTCACGACTCCACGATCTTATGGTGAACTTCATTGAGA
ACAACCGACAGATTCAGGATGCCGTACATCTACTCTCGAACTCGAATGAA
GAAGAGCAATGCATGCTGCCAGTTACATATGAGGATTATCTCTACGGCCG
AGAGACTACAATGCGGAAGCTTCTAAAATTTCTGGATGCTGACTACGAAG
ATCATGCACCGTTTCGAAAGAAAGCTACGAGCGATAACATGTGCTACGCT
CTCTTAAACTTTCACGAGGAGATATGCGACGCCTTCTTCAGGTGTTCAAA
ATGGAGATCAATGCTGCATGACCCTCGAAACTTGTGCACATGCTCTCTAT
CGAAAGGAATTGGGGCATCGACATCACGGTCGTTCTGTCCTGAAGTGAGG
TGA

protein sequence of Gchil5449.t1

>Gchil5449.t1 ID=Gchil5449.t1|Name=Gchil5449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=401bp
MATFIPEASRSKQAPHLHPVRIAILSFALFAVLMTLRDSGSRTEDVLPNF
SSSSLPLSVDEKTAVDSGVFEDNSENTADSTLSTGEHNDLKPVTANSFHL
NDFKENESFERKNEYQPPPCSQSKPGKQNFLMVFMGHSASSAILSELKQH
SRFFITIPEPIDHPPYEFNTDLGIRYADEFFKNASSTGKISGFKMRPWHI
LHAAGEWKALVIKYNIRLIWQYRINVFKQAVGEYTARYMNDSSAIEGIDH
TMSDEDRCKIGVGCQFRIENVSRLHDLMVNFIENNRQIQDAVHLLSNSNE
EEQCMLPVTYEDYLYGRETTMRKLLKFLDADYEDHAPFRKKATSDNMCYA
LLNFHEEICDAFFRCSKWRSMLHDPRNLCTCSLSKGIGASTSRSFCPEVR
*

mRNA from alignment at tig00004418_pilon:1763051..1764253+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5449.t1 ID=Gchil5449.t1|Name=Gchil5449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00004418_pilon:1763051..1764253+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACTTTCATACCGGAGGCCAGTCGTTCAAAACAGGCACCGCATCT
TCATCCCGTTCGCATTGCCATTCTGTCATTTGCGCTCTTTGCTGTGCTTA
TGACTTTGCGAGATTCTGGATCACGCACTGAGGATGTTCTTCCTAATTTC
TCGAGCAGTAGTCTTCCATTATCCGTGGATGAGAAGACTGCAGTCGATTC
TGGTGTCTTTGAAGACAACTCAGAGAACACCGCAGACTCCACACTCAGCA
CTGGTGAACACAATGACCTCAAACCGGTTACAGCCAATTCCTTTCACTTA
AACGATTTCAAAGAGAACGAATCTTTTGAACGCAAAAATGAGTATCAGCC
TCCTCCGTGCAGCCAGTCTAAACCGGGAAAACAAAACTTTTTGATGGTAT
TCATGGGACACAGTGCTTCTTCGGCCATTTTGTCTGAACTCAAGCAGCAC
TCGCGGTTCTTTATCACCATACCAGAACCAATAGACCACCCGCCGTATGA
GTTTAATACCGACTTGGGAATCCGATATGCAGACGAATTCTTTAAGAACG
CGTCTTCGACGGGGAAAATATCGGGGTTCAAGATGCGTCCATGGCACATT
TTGCACGCGGCTGGAGAATGGAAAGCTCTTGTCATCAAATACAACATAAG
ATTAATATGGCAGTACAGGATTAATGTCTTTAAGCAAGCCGTAGGTGAGT
ACACAGCAAGGTATATGAACGATAGCTCAGCTATTGAAGGGATTGATCAC
ACAATGTCTGACGAGGATCGCTGCAAAATTGGTGTGGGTTGTCAGTTTCG
AATTGAAAACGTTTCACGACTCCACGATCTTATGGTGAACTTCATTGAGA
ACAACCGACAGATTCAGGATGCCGTACATCTACTCTCGAACTCGAATGAA
GAAGAGCAATGCATGCTGCCAGTTACATATGAGGATTATCTCTACGGCCG
AGAGACTACAATGCGGAAGCTTCTAAAATTTCTGGATGCTGACTACGAAG
ATCATGCACCGTTTCGAAAGAAAGCTACGAGCGATAACATGTGCTACGCT
CTCTTAAACTTTCACGAGGAGATATGCGACGCCTTCTTCAGGTGTTCAAA
ATGGAGATCAATGCTGCATGACCCTCGAAACTTGTGCACATGCTCTCTAT
CGAAAGGAATTGGGGCATCGACATCACGGTCGTTCTGTCCTGAAGTGAGG
TGA

Coding sequence (CDS) from alignment at tig00004418_pilon:1763051..1764253+

>Gchil5449.t1 ID=Gchil5449.t1|Name=Gchil5449.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00004418_pilon:1763051..1764253+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACTTTCATACCGGAGGCCAGTCGTTCAAAACAGGCACCGCATCT
TCATCCCGTTCGCATTGCCATTCTGTCATTTGCGCTCTTTGCTGTGCTTA
TGACTTTGCGAGATTCTGGATCACGCACTGAGGATGTTCTTCCTAATTTC
TCGAGCAGTAGTCTTCCATTATCCGTGGATGAGAAGACTGCAGTCGATTC
TGGTGTCTTTGAAGACAACTCAGAGAACACCGCAGACTCCACACTCAGCA
CTGGTGAACACAATGACCTCAAACCGGTTACAGCCAATTCCTTTCACTTA
AACGATTTCAAAGAGAACGAATCTTTTGAACGCAAAAATGAGTATCAGCC
TCCTCCGTGCAGCCAGTCTAAACCGGGAAAACAAAACTTTTTGATGGTAT
TCATGGGACACAGTGCTTCTTCGGCCATTTTGTCTGAACTCAAGCAGCAC
TCGCGGTTCTTTATCACCATACCAGAACCAATAGACCACCCGCCGTATGA
GTTTAATACCGACTTGGGAATCCGATATGCAGACGAATTCTTTAAGAACG
CGTCTTCGACGGGGAAAATATCGGGGTTCAAGATGCGTCCATGGCACATT
TTGCACGCGGCTGGAGAATGGAAAGCTCTTGTCATCAAATACAACATAAG
ATTAATATGGCAGTACAGGATTAATGTCTTTAAGCAAGCCGTAGGTGAGT
ACACAGCAAGGTATATGAACGATAGCTCAGCTATTGAAGGGATTGATCAC
ACAATGTCTGACGAGGATCGCTGCAAAATTGGTGTGGGTTGTCAGTTTCG
AATTGAAAACGTTTCACGACTCCACGATCTTATGGTGAACTTCATTGAGA
ACAACCGACAGATTCAGGATGCCGTACATCTACTCTCGAACTCGAATGAA
GAAGAGCAATGCATGCTGCCAGTTACATATGAGGATTATCTCTACGGCCG
AGAGACTACAATGCGGAAGCTTCTAAAATTTCTGGATGCTGACTACGAAG
ATCATGCACCGTTTCGAAAGAAAGCTACGAGCGATAACATGTGCTACGCT
CTCTTAAACTTTCACGAGGAGATATGCGACGCCTTCTTCAGGTGTTCAAA
ATGGAGATCAATGCTGCATGACCCTCGAAACTTGTGCACATGCTCTCTAT
CGAAAGGAATTGGGGCATCGACATCACGGTCGTTCTGTCCTGAAGTGAGG
TGA