Gchil5430.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5430.t1
Unique Name	Gchil5430.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	458

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1703983..1705452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81824.XP_001750356.1
PFAMs	Peptidase_C14
Max annot lvl	33154\|Opisthokonta
Evalue	1.3e-62
EggNOG OGs	KOG1546@1\|root,KOG1546@2759\|Eukaryota,38EI0@33154\|Opisthokonta
Description	Metacaspase
COG category	DO

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5430	Gchil5430	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1703983..1705452 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5430.t1	Gchil5430.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1703983..1705452 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5430.t1.start1	Gchil5430.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1703983..1703985 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5430.t1.CDS1	Gchil5430.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1703983..1704040 +
Gchil5430.t1.CDS2	Gchil5430.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1704137..1705452 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5430.t1.exon1	Gchil5430.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1703983..1704040 +
Gchil5430.t1.exon2	Gchil5430.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1704137..1705452 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5430.t1.intron1	Gchil5430.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004418_pilon 1704041..1704136 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5430.t1.stop1	Gchil5430.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1705450..1705452 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1703983..1705452+
coding sequence from alignment at tig00004418_pilon:1703983..1705452+

mRNA sequence

>Gchil5430.t1 ID=Gchil5430.t1|Name=Gchil5430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=458bp
MGKYAVIIGINYVNNPEAALKGCCNDARLMYDLVRSKGFEEENIKMLVDD
DDSCDMPNQKNVKKALDWLCSDREDGDVIFMHFSGHGTQVPADDDDVEID
NLDEAIVLDQLFLMADDDLKQFFSKLPSGVNATVVTDCCHSGSMLDGTEV
AIEGAKDDDSAAPQHESSSLLSILGGSRGYEVAHSARSLPISTICNVMSQ
KLGKPVEPTSSGVNGAMAQVFGGTAGKLMMKFALQQLKKQEGQSSNPIFG
MLGSVLSSKMSAAGGNSSYSGGGGHSSGGHSGGGGGNPLSSLLGGSAGGL
VGSLMGGGGGGSSGGNPLSSFLGGGGGGSGGGAAQHSSSQSGDPVGMLSG
LMGGLGLEAQTEPGAPQYNPSHQPMTPDVCTLITGCQASETSADVRPPGG
DAFGALTKTLTTVHEKNPEISYYDLVSEVRRELSKGGFAQNPCLECSDTK
ARDVFIC*

spliced messenger RNA

>Gchil5430.t1 ID=Gchil5430.t1|Name=Gchil5430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00004418_pilon:1703983..1705452+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGTACGCTGTCATAATCGGCATCAACTACGTCAACAACCCGGA
GGCAGCTCTCAAGGGTTGCTGCAATGACGCACGACTCATGTACGATCTTG
TACGAAGCAAGGGCTTTGAGGAGGAAAACATAAAGATGCTTGTGGATGAT
GATGACAGTTGCGACATGCCCAACCAGAAGAACGTTAAAAAAGCCCTAGA
CTGGCTTTGCTCCGATCGCGAAGACGGCGACGTGATCTTCATGCATTTCA
GCGGACACGGAACGCAGGTACCGGCCGATGATGATGACGTCGAGATTGAC
AATCTCGATGAAGCCATCGTTTTGGACCAACTCTTCTTGATGGCTGATGA
TGATCTCAAACAGTTCTTTTCAAAGCTTCCGAGTGGTGTCAATGCCACCG
TTGTCACTGATTGTTGCCACTCTGGATCCATGCTAGATGGAACCGAGGTC
GCCATCGAAGGCGCAAAGGATGACGACAGTGCCGCCCCGCAACATGAGAG
CTCTTCACTGCTTAGCATCCTGGGTGGAAGTAGGGGATATGAAGTAGCCC
ACTCGGCACGCTCGCTTCCAATTTCTACCATTTGCAACGTCATGTCTCAG
AAGCTCGGAAAACCTGTCGAGCCTACTAGCTCAGGAGTCAATGGCGCGAT
GGCGCAGGTCTTTGGAGGCACTGCTGGCAAGCTCATGATGAAGTTTGCTT
TGCAGCAGCTCAAGAAACAGGAGGGCCAATCTAGTAATCCTATCTTTGGC
ATGCTGGGCTCTGTTTTGTCCAGCAAGATGTCCGCTGCGGGAGGAAACTC
ATCTTATTCTGGCGGCGGTGGTCACTCTAGTGGCGGGCACTCTGGCGGTG
GCGGTGGTAATCCGCTCTCCTCTCTCTTGGGTGGATCGGCCGGTGGTCTT
GTTGGCTCCTTGATGGGCGGGGGAGGTGGTGGTTCTTCTGGCGGCAACCC
ACTGTCCTCCTTCCTtggtggtggcggcggtggtagtggtggtggCGCTG
CGCAGCATTCCTCCTCTCAGTCGGGTGATCCTGTGGGAATGCTCTCCGGA
TTAATGGGTGGTCTTGGTCTTGAGGCCCAGACCGAACCAGGGGCGCCGCA
ATACAATCCTTCTCACCAGCCCATGACACCAGACGTATGCACACTTATCA
CCGGTTGTCAGGCAAGCGAGACCAGCGCTGATGTGCGTCCTCCCGGCGGA
GATGCTTTCGGCGCCTTGACAAAAACGCTTACAACAGTGCATGAGAAAAA
CCCGGAGATATCCTACTATGACCTGGTTTCTGAAGTGCGCAGGGAGTTGT
CAAAGGGCGGTTTCGCCCAGAATCCTTGTTTGGAATGTTCTGACACGAAG
GCTAGGGATGTGTTTATTTGCTGA

protein sequence of Gchil5430.t1

>Gchil5430.t1 ID=Gchil5430.t1|Name=Gchil5430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=458bp
MGKYAVIIGINYVNNPEAALKGCCNDARLMYDLVRSKGFEEENIKMLVDD
DDSCDMPNQKNVKKALDWLCSDREDGDVIFMHFSGHGTQVPADDDDVEID
NLDEAIVLDQLFLMADDDLKQFFSKLPSGVNATVVTDCCHSGSMLDGTEV
AIEGAKDDDSAAPQHESSSLLSILGGSRGYEVAHSARSLPISTICNVMSQ
KLGKPVEPTSSGVNGAMAQVFGGTAGKLMMKFALQQLKKQEGQSSNPIFG
MLGSVLSSKMSAAGGNSSYSGGGGHSSGGHSGGGGGNPLSSLLGGSAGGL
VGSLMGGGGGGSSGGNPLSSFLGGGGGGSGGGAAQHSSSQSGDPVGMLSG
LMGGLGLEAQTEPGAPQYNPSHQPMTPDVCTLITGCQASETSADVRPPGG
DAFGALTKTLTTVHEKNPEISYYDLVSEVRRELSKGGFAQNPCLECSDTK
ARDVFIC*

mRNA from alignment at tig00004418_pilon:1703983..1705452+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5430.t1 ID=Gchil5430.t1|Name=Gchil5430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00004418_pilon:1703983..1705452+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAAGTACGCTGTCATAATCGGCATCAACTACGTCAACAACCCGGA
GGCAGCTCGTAAGTGATCATGCTCTCTTTTCTCCATCATTACTGCGATTT
GAGTTTTCTCTTGCATTGCATCACTCTCTAACTTTATCAATTCTCAATTG
CCAGTCAAGGGTTGCTGCAATGACGCACGACTCATGTACGATCTTGTACG
AAGCAAGGGCTTTGAGGAGGAAAACATAAAGATGCTTGTGGATGATGATG
ACAGTTGCGACATGCCCAACCAGAAGAACGTTAAAAAAGCCCTAGACTGG
CTTTGCTCCGATCGCGAAGACGGCGACGTGATCTTCATGCATTTCAGCGG
ACACGGAACGCAGGTACCGGCCGATGATGATGACGTCGAGATTGACAATC
TCGATGAAGCCATCGTTTTGGACCAACTCTTCTTGATGGCTGATGATGAT
CTCAAACAGTTCTTTTCAAAGCTTCCGAGTGGTGTCAATGCCACCGTTGT
CACTGATTGTTGCCACTCTGGATCCATGCTAGATGGAACCGAGGTCGCCA
TCGAAGGCGCAAAGGATGACGACAGTGCCGCCCCGCAACATGAGAGCTCT
TCACTGCTTAGCATCCTGGGTGGAAGTAGGGGATATGAAGTAGCCCACTC
GGCACGCTCGCTTCCAATTTCTACCATTTGCAACGTCATGTCTCAGAAGC
TCGGAAAACCTGTCGAGCCTACTAGCTCAGGAGTCAATGGCGCGATGGCG
CAGGTCTTTGGAGGCACTGCTGGCAAGCTCATGATGAAGTTTGCTTTGCA
GCAGCTCAAGAAACAGGAGGGCCAATCTAGTAATCCTATCTTTGGCATGC
TGGGCTCTGTTTTGTCCAGCAAGATGTCCGCTGCGGGAGGAAACTCATCT
TATTCTGGCGGCGGTGGTCACTCTAGTGGCGGGCACTCTGGCGGTGGCGG
TGGTAATCCGCTCTCCTCTCTCTTGGGTGGATCGGCCGGTGGTCTTGTTG
GCTCCTTGATGGGCGGGGGAGGTGGTGGTTCTTCTGGCGGCAACCCACTG
TCCTCCTTCCTtggtggtggcggcggtggtagtggtggtggCGCTGCGCA
GCATTCCTCCTCTCAGTCGGGTGATCCTGTGGGAATGCTCTCCGGATTAA
TGGGTGGTCTTGGTCTTGAGGCCCAGACCGAACCAGGGGCGCCGCAATAC
AATCCTTCTCACCAGCCCATGACACCAGACGTATGCACACTTATCACCGG
TTGTCAGGCAAGCGAGACCAGCGCTGATGTGCGTCCTCCCGGCGGAGATG
CTTTCGGCGCCTTGACAAAAACGCTTACAACAGTGCATGAGAAAAACCCG
GAGATATCCTACTATGACCTGGTTTCTGAAGTGCGCAGGGAGTTGTCAAA
GGGCGGTTTCGCCCAGAATCCTTGTTTGGAATGTTCTGACACGAAGGCTA
GGGATGTGTTTATTTGCTGA

Coding sequence (CDS) from alignment at tig00004418_pilon:1703983..1705452+

>Gchil5430.t1 ID=Gchil5430.t1|Name=Gchil5430.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00004418_pilon:1703983..1705452+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCAAGTACGCTGTCATAATCGGCATCAACTACGTCAACAACCCGGA
GGCAGCTCTCAAGGGTTGCTGCAATGACGCACGACTCATGTACGATCTTG
TACGAAGCAAGGGCTTTGAGGAGGAAAACATAAAGATGCTTGTGGATGAT
GATGACAGTTGCGACATGCCCAACCAGAAGAACGTTAAAAAAGCCCTAGA
CTGGCTTTGCTCCGATCGCGAAGACGGCGACGTGATCTTCATGCATTTCA
GCGGACACGGAACGCAGGTACCGGCCGATGATGATGACGTCGAGATTGAC
AATCTCGATGAAGCCATCGTTTTGGACCAACTCTTCTTGATGGCTGATGA
TGATCTCAAACAGTTCTTTTCAAAGCTTCCGAGTGGTGTCAATGCCACCG
TTGTCACTGATTGTTGCCACTCTGGATCCATGCTAGATGGAACCGAGGTC
GCCATCGAAGGCGCAAAGGATGACGACAGTGCCGCCCCGCAACATGAGAG
CTCTTCACTGCTTAGCATCCTGGGTGGAAGTAGGGGATATGAAGTAGCCC
ACTCGGCACGCTCGCTTCCAATTTCTACCATTTGCAACGTCATGTCTCAG
AAGCTCGGAAAACCTGTCGAGCCTACTAGCTCAGGAGTCAATGGCGCGAT
GGCGCAGGTCTTTGGAGGCACTGCTGGCAAGCTCATGATGAAGTTTGCTT
TGCAGCAGCTCAAGAAACAGGAGGGCCAATCTAGTAATCCTATCTTTGGC
ATGCTGGGCTCTGTTTTGTCCAGCAAGATGTCCGCTGCGGGAGGAAACTC
ATCTTATTCTGGCGGCGGTGGTCACTCTAGTGGCGGGCACTCTGGCGGTG
GCGGTGGTAATCCGCTCTCCTCTCTCTTGGGTGGATCGGCCGGTGGTCTT
GTTGGCTCCTTGATGGGCGGGGGAGGTGGTGGTTCTTCTGGCGGCAACCC
ACTGTCCTCCTTCCTtggtggtggcggcggtggtagtggtggtggCGCTG
CGCAGCATTCCTCCTCTCAGTCGGGTGATCCTGTGGGAATGCTCTCCGGA
TTAATGGGTGGTCTTGGTCTTGAGGCCCAGACCGAACCAGGGGCGCCGCA
ATACAATCCTTCTCACCAGCCCATGACACCAGACGTATGCACACTTATCA
CCGGTTGTCAGGCAAGCGAGACCAGCGCTGATGTGCGTCCTCCCGGCGGA
GATGCTTTCGGCGCCTTGACAAAAACGCTTACAACAGTGCATGAGAAAAA
CCCGGAGATATCCTACTATGACCTGGTTTCTGAAGTGCGCAGGGAGTTGT
CAAAGGGCGGTTTCGCCCAGAATCCTTGTTTGGAATGTTCTGACACGAAG
GCTAGGGATGTGTTTATTTGCTGA