Gchil5393.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5393.t1
Unique NameGchil5393.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1473493..1474197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5393Gchil5393Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1473493..1474197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5393.t1Gchil5393.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1473493..1474197 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5393.t1.start1Gchil5393.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1473493..1473495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5393.t1.CDS1Gchil5393.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1473493..1473709 +
Gchil5393.t1.CDS2Gchil5393.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1473813..1473834 +
Gchil5393.t1.CDS3Gchil5393.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1474089..1474197 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5393.t1.exon1Gchil5393.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1473493..1473709 +
Gchil5393.t1.exon2Gchil5393.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1473813..1473834 +
Gchil5393.t1.exon3Gchil5393.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1474089..1474197 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5393.t1.intron1Gchil5393.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1473710..1473812 +
Gchil5393.t1.intron2Gchil5393.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1473835..1474088 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5393.t1.stop1Gchil5393.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1474195..1474197 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5393.t1 ID=Gchil5393.t1|Name=Gchil5393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MATWYSGYVLCISILRRGAGGSYIITIGSVGLPRRSQDLPSSRRHLRTHL
GAISEPSRSHLWTPGTTRAGGARRDSVTRRVATERAISMFCLTPSHVFVG
LFAKRLVTASSAEHA*
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spliced messenger RNA

>Gchil5393.t1 ID=Gchil5393.t1|Name=Gchil5393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004418_pilon:1473493..1474197+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACATGGTACAGTGGCTACGTGTTATGCATTTCGATTCTTCGTCG
GGGCGCCGGCGGCAGCTACATAATAACAATCGGCAGCGTCGGCCTGCCAC
GAAGGAGCCAAGATCTGCCTTCTTCTCGGCGCCATCTCAGAACTCATCTC
GGAGCCATCTCGGAGCCATCTCGGAGCCATCTTTGGACGCCAGGCACTAC
TCGGGCCGGTGGCGCACGCCGGGACAGCGTGACCCGTAGAGTCGCTACGG
AGCGCGCCATATCCATGTTTTGTTTGACGCCTTCACATGTCTTTGTCGGT
TTATTTGCCAAGCGCTTGGTCACTGCATCAAGTGCTGAGCACGCGTGA
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protein sequence of Gchil5393.t1

>Gchil5393.t1 ID=Gchil5393.t1|Name=Gchil5393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MATWYSGYVLCISILRRGAGGSYIITIGSVGLPRRSQDLPSSRRHLRTHL
GAISEPSRSHLWTPGTTRAGGARRDSVTRRVATERAISMFCLTPSHVFVG
LFAKRLVTASSAEHA*
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mRNA from alignment at tig00004418_pilon:1473493..1474197+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5393.t1 ID=Gchil5393.t1|Name=Gchil5393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=705bp|location=Sequence derived from alignment at tig00004418_pilon:1473493..1474197+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACATGGTACAGTGGCTACGTGTTATGCATTTCGATTCTTCGTCG
GGGCGCCGGCGGCAGCTACATAATAACAATCGGCAGCGTCGGCCTGCCAC
GAAGGAGCCAAGATCTGCCTTCTTCTCGGCGCCATCTCAGAACTCATCTC
GGAGCCATCTCGGAGCCATCTCGGAGCCATCTTTGGACGCCAGGCACTAC
TCGGGCCGGTGGCGCACGTGAGGGGCGGCGTGCTTGATTGCGCGTGGTCT
CCGAGCGCCTGTGCTTACTCTACGGAGGCGGTTTCACCCCGCCCTGTCTC
CACGCCGCTGTGGCGCGCAGGCCGGGACAGCGTGACCCGTAGGTGAGTTT
TATCGCTTGTACTGACTTTTGTGGTGGGAAAGCCGCTCAAATGATGAACA
ACCTTATATTTGCTACTCTTGAAGCGCGTGCGACTTGTGACGTCCACGCG
ATGACGAGTGATTACCATCTTCACCAAGATCGTTGATGAGCTATGCTTCC
TGCCAGTCGCCCGCACGAAGACTGAATGTGTTCCATGAGTGACTGACCGC
TTTGTGTTTGTGCTTTTTTGTTTTCGTGGCCCATCACTGCCCATAGAGTC
GCTACGGAGCGCGCCATATCCATGTTTTGTTTGACGCCTTCACATGTCTT
TGTCGGTTTATTTGCCAAGCGCTTGGTCACTGCATCAAGTGCTGAGCACG
CGTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1473493..1474197+

>Gchil5393.t1 ID=Gchil5393.t1|Name=Gchil5393.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004418_pilon:1473493..1474197+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACATGGTACAGTGGCTACGTGTTATGCATTTCGATTCTTCGTCG
GGGCGCCGGCGGCAGCTACATAATAACAATCGGCAGCGTCGGCCTGCCAC
GAAGGAGCCAAGATCTGCCTTCTTCTCGGCGCCATCTCAGAACTCATCTC
GGAGCCATCTCGGAGCCATCTCGGAGCCATCTTTGGACGCCAGGCACTAC
TCGGGCCGGTGGCGCACGCCGGGACAGCGTGACCCGTAGAGTCGCTACGG
AGCGCGCCATATCCATGTTTTGTTTGACGCCTTCACATGTCTTTGTCGGT
TTATTTGCCAAGCGCTTGGTCACTGCATCAAGTGCTGAGCACGCGTGA
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