Gchil539.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil539.t1
Unique NameGchil539.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:787828..788667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil539Gchil539Gracilaria chilensis NLEC103_M9 malegenetig00000060_pilon 787828..788667 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil539.t1.stop1Gchil539.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000060_pilon 787828..787830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil539.t1.CDS1Gchil539.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 787828..788667 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil539.t1.exon1Gchil539.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 787828..788667 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil539.t1.start1Gchil539.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000060_pilon 788665..788667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil539.t1Gchil539.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000060_pilon 787828..788667 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil539.t1 ID=Gchil539.t1|Name=Gchil539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=280bp
MLRCGRDGLRFLAPCVPPLGPDAMWPDALWPDAPWPDTECAPPPPCRRAA
VGTHASCADAICPELPTAQLSVGELDVPDVAVGELAVGELAVGELAVGGL
AVGGLAAGGLAAGGLAVGGLAVGELAVGELSVAHVASAEPVSAASAGTDL
APRDAMWSASASASASASARSYGSESDAPSADTGVRAITRKQQWQQEQQE
ERLVPKSVKGAPAHLRRAIRKRQNSASAQRSRERRKLKVLGFHEVVGTQQ
RRIDMLEARVRALRGLLEARGRSDGDGDA*
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spliced messenger RNA

>Gchil539.t1 ID=Gchil539.t1|Name=Gchil539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000060_pilon:787828..788667- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAGGTGCGGCCGCGACGGACTGCGCTTCCTCGCGCCGTGCGTTCC
GCCGCTGGGGCCGGACGCCATGTGGCCGGACGCGCTGTGGCCGGACGCGC
CGTGGCCGGACACGGAGTGCGCGCCCCCGCCGCCCTGCCGTCGGGCCGCC
GTGGGCACCCATGCCTCTTGCGCTGACGCCATTTGCCCCGAGCTGCCCAC
CGCCCAGCTTTCCGTCGGCGAGCTTGACGTGCCCGATGTTGCCGTCGGTG
AGCTTGCCGTCGGTGAGCTTGCCGTCGGTGAGCTTGCCGTCGGTGGGCTT
GCCGTCGGTGGGCTTGCCGCCGGTGGGCTTGCCGCCGGTGGGCTTGCCGT
CGGTGGGCTTGCCGTCGGCGAACTTGCCGTCGGCGAGCTTTCCGTCGCCC
ATGTTGCCAGCGCCGAGCCTGTCAGCGCCGCGTCCGCGGGCACCGATCTG
GCACCCAGGGACGCCATGTGGAGCGCCTCGGCAAGCGCCTCGGCAAGCGC
CTCGGCGCGCAGCTACGGCAGCGAAAGCGACGCACCAAGCGCTGACACGG
GCGTGCGCGCAATCACACGCAAACAACAGTGGCAACAAGAGCAACAAGAA
GAGCGATTGGTGCCAAAATCGGTCAAAGGAGCACCGGCGCACCTGCGACG
AGCCATCCGCAAGAGGCAGAACTCGGCCTCGGCGCAACGCTCTCGAGAAC
GACGCAAACTAAAAGTGCTCGGCTTTCACGAGGTGGTTGGCACGCAACAA
CGTCGCATTGACATGTTGGAGGCGCGTGTCCGCGCGCTACGCGGTCTGTT
GGAGGCACGAGGGAGGAGCGATGGCGATGGTGACGCGTAG
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protein sequence of Gchil539.t1

>Gchil539.t1 ID=Gchil539.t1|Name=Gchil539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=280bp
MLRCGRDGLRFLAPCVPPLGPDAMWPDALWPDAPWPDTECAPPPPCRRAA
VGTHASCADAICPELPTAQLSVGELDVPDVAVGELAVGELAVGELAVGGL
AVGGLAAGGLAAGGLAVGGLAVGELAVGELSVAHVASAEPVSAASAGTDL
APRDAMWSASASASASASARSYGSESDAPSADTGVRAITRKQQWQQEQQE
ERLVPKSVKGAPAHLRRAIRKRQNSASAQRSRERRKLKVLGFHEVVGTQQ
RRIDMLEARVRALRGLLEARGRSDGDGDA*
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mRNA from alignment at tig00000060_pilon:787828..788667-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil539.t1 ID=Gchil539.t1|Name=Gchil539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000060_pilon:787828..788667- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGAGGTGCGGCCGCGACGGACTGCGCTTCCTCGCGCCGTGCGTTCC
GCCGCTGGGGCCGGACGCCATGTGGCCGGACGCGCTGTGGCCGGACGCGC
CGTGGCCGGACACGGAGTGCGCGCCCCCGCCGCCCTGCCGTCGGGCCGCC
GTGGGCACCCATGCCTCTTGCGCTGACGCCATTTGCCCCGAGCTGCCCAC
CGCCCAGCTTTCCGTCGGCGAGCTTGACGTGCCCGATGTTGCCGTCGGTG
AGCTTGCCGTCGGTGAGCTTGCCGTCGGTGAGCTTGCCGTCGGTGGGCTT
GCCGTCGGTGGGCTTGCCGCCGGTGGGCTTGCCGCCGGTGGGCTTGCCGT
CGGTGGGCTTGCCGTCGGCGAACTTGCCGTCGGCGAGCTTTCCGTCGCCC
ATGTTGCCAGCGCCGAGCCTGTCAGCGCCGCGTCCGCGGGCACCGATCTG
GCACCCAGGGACGCCATGTGGAGCGCCTCGGCAAGCGCCTCGGCAAGCGC
CTCGGCGCGCAGCTACGGCAGCGAAAGCGACGCACCAAGCGCTGACACGG
GCGTGCGCGCAATCACACGCAAACAACAGTGGCAACAAGAGCAACAAGAA
GAGCGATTGGTGCCAAAATCGGTCAAAGGAGCACCGGCGCACCTGCGACG
AGCCATCCGCAAGAGGCAGAACTCGGCCTCGGCGCAACGCTCTCGAGAAC
GACGCAAACTAAAAGTGCTCGGCTTTCACGAGGTGGTTGGCACGCAACAA
CGTCGCATTGACATGTTGGAGGCGCGTGTCCGCGCGCTACGCGGTCTGTT
GGAGGCACGAGGGAGGAGCGATGGCGATGGTGACGCGTAG
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Coding sequence (CDS) from alignment at tig00000060_pilon:787828..788667-

>Gchil539.t1 ID=Gchil539.t1|Name=Gchil539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000060_pilon:787828..788667- (Gracilaria chilensis NLEC103_M9 male)
ATGTTGAGGTGCGGCCGCGACGGACTGCGCTTCCTCGCGCCGTGCGTTCC
GCCGCTGGGGCCGGACGCCATGTGGCCGGACGCGCTGTGGCCGGACGCGC
CGTGGCCGGACACGGAGTGCGCGCCCCCGCCGCCCTGCCGTCGGGCCGCC
GTGGGCACCCATGCCTCTTGCGCTGACGCCATTTGCCCCGAGCTGCCCAC
CGCCCAGCTTTCCGTCGGCGAGCTTGACGTGCCCGATGTTGCCGTCGGTG
AGCTTGCCGTCGGTGAGCTTGCCGTCGGTGAGCTTGCCGTCGGTGGGCTT
GCCGTCGGTGGGCTTGCCGCCGGTGGGCTTGCCGCCGGTGGGCTTGCCGT
CGGTGGGCTTGCCGTCGGCGAACTTGCCGTCGGCGAGCTTTCCGTCGCCC
ATGTTGCCAGCGCCGAGCCTGTCAGCGCCGCGTCCGCGGGCACCGATCTG
GCACCCAGGGACGCCATGTGGAGCGCCTCGGCAAGCGCCTCGGCAAGCGC
CTCGGCGCGCAGCTACGGCAGCGAAAGCGACGCACCAAGCGCTGACACGG
GCGTGCGCGCAATCACACGCAAACAACAGTGGCAACAAGAGCAACAAGAA
GAGCGATTGGTGCCAAAATCGGTCAAAGGAGCACCGGCGCACCTGCGACG
AGCCATCCGCAAGAGGCAGAACTCGGCCTCGGCGCAACGCTCTCGAGAAC
GACGCAAACTAAAAGTGCTCGGCTTTCACGAGGTGGTTGGCACGCAACAA
CGTCGCATTGACATGTTGGAGGCGCGTGTCCGCGCGCTACGCGGTCTGTT
GGAGGCACGAGGGAGGAGCGATGGCGATGGTGACGCGTAG
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