Gchil5367.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5367.t1
Unique NameGchil5367.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1291475..1291901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008792450.1
Preferred nameRPL30
PFAMsRibosomal_L7Ae
Max annot lvl35493|Streptophyta
KEGG koko:K02908
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.5e-46
EggNOG OGsCOG1911@1|root,KOG2988@2759|Eukaryota,37UMM@33090|Viridiplantae,3GIJ8@35493|Streptophyta,3M05X@4447|Liliopsida
Description60S ribosomal protein L30
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5367Gchil5367Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1291475..1291901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5367.t1Gchil5367.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1291475..1291901 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5367.t1.start1Gchil5367.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1291475..1291477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5367.t1.CDS1Gchil5367.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1291475..1291712 +
Gchil5367.t1.CDS2Gchil5367.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1291804..1291901 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5367.t1.exon1Gchil5367.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1291475..1291712 +
Gchil5367.t1.exon2Gchil5367.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1291804..1291901 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5367.t1.intron1Gchil5367.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1291713..1291803 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5367.t1.stop1Gchil5367.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1291899..1291901 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5367.t1 ID=Gchil5367.t1|Name=Gchil5367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=112bp
MVKGKKKSTENVNQRLALVVKSGKYTLGYKSTIRTLRTGKAKLILIASNA
APLKKSELEYYAMLAKCQVHHFQGNNIDLGTACGRYFRTSAMAITDPGDS
EIDSVFLNSES*
back to top

spliced messenger RNA

>Gchil5367.t1 ID=Gchil5367.t1|Name=Gchil5367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00004418_pilon:1291475..1291901+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGGGAAAGAAGAAGAGCACGGAAAATGTCAACCAAAGGCTTGC
TCTGGTCGTCAAGTCCGGCAAGTACACCCTCGGATACAAGTCAACCATCC
GAACTTTGAGAACGGGCAAGGCCAAGCTCATCCTCATCGCCTCCAACGCC
GCCCCTTTGAAGAAATCCGAGCTGGAGTACTACGCCATGCTTGCAAAGTG
CCAGGTTCATCATTTCCAAGGCAACAACATTGATTTAGGAACCGCTTGTG
GTAGATACTTCCGCACCAGCGCGATGGCCATTACCGATCCCGGCGACAGC
GAAATTGATAGCGTTTTCTTGAACTCAGAAAGCTAA
back to top

protein sequence of Gchil5367.t1

>Gchil5367.t1 ID=Gchil5367.t1|Name=Gchil5367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=112bp
MVKGKKKSTENVNQRLALVVKSGKYTLGYKSTIRTLRTGKAKLILIASNA
APLKKSELEYYAMLAKCQVHHFQGNNIDLGTACGRYFRTSAMAITDPGDS
EIDSVFLNSES*
back to top

mRNA from alignment at tig00004418_pilon:1291475..1291901+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5367.t1 ID=Gchil5367.t1|Name=Gchil5367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=427bp|location=Sequence derived from alignment at tig00004418_pilon:1291475..1291901+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAAGGGAAAGAAGAAGAGCACGGAAAATGTCAACCAAAGGCTTGC
TCTGGTCGTCAAGTCCGGCAAGTACACCCTCGGATACAAGTCAACCATCC
GAACTTTGAGAACGGGCAAGGCCAAGCTCATCCTCATCGCCTCCAACGCC
GCCCCTTTGAAGAAATCCGAGCTGGAGTACTACGCCATGCTTGCAAAGTG
CCAGGTTCATCATTTCCAAGGCAACAACATTGATTTAGGTACGTTCGCCT
GCGACCACTACTACCGTGTCATAATCCGCACAAACAGGAGAAACTAACTC
TACCGAATTGCTCTTCACTTTTGAAACAGGAACCGCTTGTGGTAGATACT
TCCGCACCAGCGCGATGGCCATTACCGATCCCGGCGACAGCGAAATTGAT
AGCGTTTTCTTGAACTCAGAAAGCTAA
back to top

Coding sequence (CDS) from alignment at tig00004418_pilon:1291475..1291901+

>Gchil5367.t1 ID=Gchil5367.t1|Name=Gchil5367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00004418_pilon:1291475..1291901+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCAAGGGAAAGAAGAAGAGCACGGAAAATGTCAACCAAAGGCTTGC
TCTGGTCGTCAAGTCCGGCAAGTACACCCTCGGATACAAGTCAACCATCC
GAACTTTGAGAACGGGCAAGGCCAAGCTCATCCTCATCGCCTCCAACGCC
GCCCCTTTGAAGAAATCCGAGCTGGAGTACTACGCCATGCTTGCAAAGTG
CCAGGTTCATCATTTCCAAGGCAACAACATTGATTTAGGAACCGCTTGTG
GTAGATACTTCCGCACCAGCGCGATGGCCATTACCGATCCCGGCGACAGC
GAAATTGATAGCGTTTTCTTGAACTCAGAAAGCTAA
back to top