Gchil5361.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5361.t1
Unique Name	Gchil5361.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004418_pilon	contig	tig00004418_pilon:1277419..1279281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5361	Gchil5361	Gracilaria chilensis NLEC103_M9 male	gene	tig00004418_pilon 1277419..1279281 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5361.t1.start1	Gchil5361.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004418_pilon 1277419..1277421 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5361.t1.CDS1	Gchil5361.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004418_pilon 1277419..1279281 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5361.t1.exon1	Gchil5361.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004418_pilon 1277419..1279281 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5361.t1.stop1	Gchil5361.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004418_pilon 1279279..1279281 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5361.t1	Gchil5361.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004418_pilon 1277419..1279281 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004418_pilon:1277419..1279281+
coding sequence from alignment at tig00004418_pilon:1277419..1279281+

mRNA sequence

>Gchil5361.t1 ID=Gchil5361.t1|Name=Gchil5361.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=621bp
MEKHEKEEVVTSVSEKLILAEQEYNENNLELQCFRRVVNGLTKLGETRKE
KMRNGEDVSHQDEFLDENRRRLGHLLSNSKAEGGHYNVDFHAWATDIEND
IRAQDPLMLSFDSADADVFPKTTSSRFLDEAQTISSKGGALLNILKSNGK
LSPKLGNQGSTKSVDQSFFWLTTIAWVFAVFGMMITIGFLAADFWYAQKH
VAIHVERSKRQPQELPAITICNFASNIQSFSDYPTSEYPGLPIFGIQRFI
RYNQSTASVVSDITYPGVLPGSPKTQIEDVIVANDESECDESSGLDVRRE
MTAMRSNTDLSVQNSLNGKTCHHCLRLGYKRRLVLHPPQNEADSIRHPAI
NLILYRTKLFAACQTEYHRRNIMIVSLFVDEIQKYAEELEGQGILDFNDE
DKEKAIGVDWYRVDSQKFFDFCCNVYFFSGFFYPSRDNADISYRFDHDTA
ERWMKTGSGPYYSAFTWSSDDPVISGPHRSVIEKDFYTFDALELYIEEAE
GIKGSTTVSPHAKVAAFEATDKTLYRLKKVLNQGKIEYKIIQSKSASQEL
ALKAVDLYNVQFDFETFETETIITTPTMTWPEFVVDVFEFIGLFTGICIF
TLIVAPAHSLVYPNSETEQK*

spliced messenger RNA

>Gchil5361.t1 ID=Gchil5361.t1|Name=Gchil5361.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00004418_pilon:1277419..1279281+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAGCACGAGAAAGAAGAAGTGGTAACGTCAGTGTCCGAGAAACT
GATTTTAGCTGAACAGGAGTACAATGAAAACAATCTGGAGTTGCAATGCT
TTAGGAGAGTTGTTAATGGACTCACAAAGCTTGGAGAGACACGAAAGGAG
AAAATGAGAAACGGGGAAGACGTTTCCCACCAAGACGAGTTCTTAGATGA
AAATCGAAGGCGTCTGGGACATTTGCTTTCAAATTCTAAAGCAGAAGGAG
GACATTACAATGTTGATTTTCATGCTTGGGCAACAGATATTGAAAATGAT
ATACGAGCTCAAGATCCATTGATGTTGTCATTCGACTCTGCAGATGCGGA
TGTGTTTCCGAAAACTACTTCGTCACGCTTCCTTGACGAGGCTCAGACGA
TATCGAGTAAGGGCGGTGCGCTGTTGAATATTTTAAAGAGTAACGGAAAA
CTCTCACCGAAGCTTGGAAATCAAGGATCCACGAAATCTGTAGATCAGAG
TTTCTTTTGGTTGACAACAATAGCTTGGGTGTTTGCTGTCTTTGGAATGA
TGATAACAATAGGATTTCTTGCTGCTGACTTTTGGTACGCTCAAAAGCAC
GTTGCAATTCACGTAGAACGCTCTAAGCGACAACCGCAAGAACTCCCGGC
CATAACCATATGCAATTTCGCTTCGAACATTCAAAGCTTCTCTGACTATC
CAACCTCAGAGTATCCTGGCTTACCTATTTTCGGAATTCAGAGATTCATC
CGATACAATCAATCTACGGCTTCAGTTGTCTCCGACATTACATACCCCGG
CGTTTTGCCAGGCTCCCCGAAGACGCAGATAGAGGACGTAATCGTCGCGA
ATGATGAGTCTGAATGCGATGAAAGTAGTGGTTTAGATGTCAGAAGAGAA
ATGACAGCGATGCGATCGAACACCGATCTCAGTGTTCAAAACAGTTTGAA
CGGAAAAACCTGTCATCATTGCCTACGGTTGGGATACAAAAGAAGGCTTG
TGCTCCACCCCCCTCAGAACGAAGCAGATAGCATTCGACATCCGGCAATC
AATTTAATACTTTACAGAACGAAGCTATTTGCGGCTTGTCAGACAGAATA
TCATAGAAGGAACATCATGATTGTGTCTCTTTTCGTGGATGAAATACAGA
AGTATGCAGAAGAACTGGAAGGACAAGGGATTCTTGACTTCAACGACGAA
GACAAGGAAAAAGCTATTGGAGTAGACTGGTATCGAGTCGATAGTCAAAA
GTTTTTCGATTTCTGTTGCAATGTCTACTTTTTCTCCGGTTTCTTTTATC
CGTCACGGGACAATGCTGATATTTCTTATCGGTTCGATCACGATACTGCA
GAACGCTGGATGAAAACGGGATCTGGACCGTACTATTCTGCATTTACATG
GAGTTCTGATGATCCTGTAATTTCGGGTCCACATCGTTCGGTAATTGAAA
AGGATTTCTATACTTTTGACGCTCTGGAATTGTACATCGAAGAAGCAGAA
GGCATCAAGGGTTCCACAACAGTATCCCCTCACGCAAAGGTAGCTGCATT
TGAAGCAACTGACAAGACTCTGTACAGATTGAAGAAAGTATTGAATCAGG
GTAAGATTGAGTATAAAATCATTCAAAGCAAATCGGCTTCGCAGGAACTT
GCACTGAAGGCAGTAGATTTATACAACGTTCAATTTGACTTTGAAACGTT
TGAGACGGAAACGATCATCACGACTCCGACAATGACTTGGCCAGAATTTG
TTGTCGATGTGTTCGAGTTCATTGGATTGTTTACCGGAATTTGTATCTTC
ACGCTAATTGTTGCGCCTGCTCATTCGCTTGTGTACCCAAACTCAGAAAC
GGAACAAAAGTAA

protein sequence of Gchil5361.t1

>Gchil5361.t1 ID=Gchil5361.t1|Name=Gchil5361.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=621bp
MEKHEKEEVVTSVSEKLILAEQEYNENNLELQCFRRVVNGLTKLGETRKE
KMRNGEDVSHQDEFLDENRRRLGHLLSNSKAEGGHYNVDFHAWATDIEND
IRAQDPLMLSFDSADADVFPKTTSSRFLDEAQTISSKGGALLNILKSNGK
LSPKLGNQGSTKSVDQSFFWLTTIAWVFAVFGMMITIGFLAADFWYAQKH
VAIHVERSKRQPQELPAITICNFASNIQSFSDYPTSEYPGLPIFGIQRFI
RYNQSTASVVSDITYPGVLPGSPKTQIEDVIVANDESECDESSGLDVRRE
MTAMRSNTDLSVQNSLNGKTCHHCLRLGYKRRLVLHPPQNEADSIRHPAI
NLILYRTKLFAACQTEYHRRNIMIVSLFVDEIQKYAEELEGQGILDFNDE
DKEKAIGVDWYRVDSQKFFDFCCNVYFFSGFFYPSRDNADISYRFDHDTA
ERWMKTGSGPYYSAFTWSSDDPVISGPHRSVIEKDFYTFDALELYIEEAE
GIKGSTTVSPHAKVAAFEATDKTLYRLKKVLNQGKIEYKIIQSKSASQEL
ALKAVDLYNVQFDFETFETETIITTPTMTWPEFVVDVFEFIGLFTGICIF
TLIVAPAHSLVYPNSETEQK*

mRNA from alignment at tig00004418_pilon:1277419..1279281+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5361.t1 ID=Gchil5361.t1|Name=Gchil5361.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1863bp|location=Sequence derived from alignment at tig00004418_pilon:1277419..1279281+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAGCACGAGAAAGAAGAAGTGGTAACGTCAGTGTCCGAGAAACT
GATTTTAGCTGAACAGGAGTACAATGAAAACAATCTGGAGTTGCAATGCT
TTAGGAGAGTTGTTAATGGACTCACAAAGCTTGGAGAGACACGAAAGGAG
AAAATGAGAAACGGGGAAGACGTTTCCCACCAAGACGAGTTCTTAGATGA
AAATCGAAGGCGTCTGGGACATTTGCTTTCAAATTCTAAAGCAGAAGGAG
GACATTACAATGTTGATTTTCATGCTTGGGCAACAGATATTGAAAATGAT
ATACGAGCTCAAGATCCATTGATGTTGTCATTCGACTCTGCAGATGCGGA
TGTGTTTCCGAAAACTACTTCGTCACGCTTCCTTGACGAGGCTCAGACGA
TATCGAGTAAGGGCGGTGCGCTGTTGAATATTTTAAAGAGTAACGGAAAA
CTCTCACCGAAGCTTGGAAATCAAGGATCCACGAAATCTGTAGATCAGAG
TTTCTTTTGGTTGACAACAATAGCTTGGGTGTTTGCTGTCTTTGGAATGA
TGATAACAATAGGATTTCTTGCTGCTGACTTTTGGTACGCTCAAAAGCAC
GTTGCAATTCACGTAGAACGCTCTAAGCGACAACCGCAAGAACTCCCGGC
CATAACCATATGCAATTTCGCTTCGAACATTCAAAGCTTCTCTGACTATC
CAACCTCAGAGTATCCTGGCTTACCTATTTTCGGAATTCAGAGATTCATC
CGATACAATCAATCTACGGCTTCAGTTGTCTCCGACATTACATACCCCGG
CGTTTTGCCAGGCTCCCCGAAGACGCAGATAGAGGACGTAATCGTCGCGA
ATGATGAGTCTGAATGCGATGAAAGTAGTGGTTTAGATGTCAGAAGAGAA
ATGACAGCGATGCGATCGAACACCGATCTCAGTGTTCAAAACAGTTTGAA
CGGAAAAACCTGTCATCATTGCCTACGGTTGGGATACAAAAGAAGGCTTG
TGCTCCACCCCCCTCAGAACGAAGCAGATAGCATTCGACATCCGGCAATC
AATTTAATACTTTACAGAACGAAGCTATTTGCGGCTTGTCAGACAGAATA
TCATAGAAGGAACATCATGATTGTGTCTCTTTTCGTGGATGAAATACAGA
AGTATGCAGAAGAACTGGAAGGACAAGGGATTCTTGACTTCAACGACGAA
GACAAGGAAAAAGCTATTGGAGTAGACTGGTATCGAGTCGATAGTCAAAA
GTTTTTCGATTTCTGTTGCAATGTCTACTTTTTCTCCGGTTTCTTTTATC
CGTCACGGGACAATGCTGATATTTCTTATCGGTTCGATCACGATACTGCA
GAACGCTGGATGAAAACGGGATCTGGACCGTACTATTCTGCATTTACATG
GAGTTCTGATGATCCTGTAATTTCGGGTCCACATCGTTCGGTAATTGAAA
AGGATTTCTATACTTTTGACGCTCTGGAATTGTACATCGAAGAAGCAGAA
GGCATCAAGGGTTCCACAACAGTATCCCCTCACGCAAAGGTAGCTGCATT
TGAAGCAACTGACAAGACTCTGTACAGATTGAAGAAAGTATTGAATCAGG
GTAAGATTGAGTATAAAATCATTCAAAGCAAATCGGCTTCGCAGGAACTT
GCACTGAAGGCAGTAGATTTATACAACGTTCAATTTGACTTTGAAACGTT
TGAGACGGAAACGATCATCACGACTCCGACAATGACTTGGCCAGAATTTG
TTGTCGATGTGTTCGAGTTCATTGGATTGTTTACCGGAATTTGTATCTTC
ACGCTAATTGTTGCGCCTGCTCATTCGCTTGTGTACCCAAACTCAGAAAC
GGAACAAAAGTAA

Coding sequence (CDS) from alignment at tig00004418_pilon:1277419..1279281+

>Gchil5361.t1 ID=Gchil5361.t1|Name=Gchil5361.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1863bp|location=Sequence derived from alignment at tig00004418_pilon:1277419..1279281+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAGCACGAGAAAGAAGAAGTGGTAACGTCAGTGTCCGAGAAACT
GATTTTAGCTGAACAGGAGTACAATGAAAACAATCTGGAGTTGCAATGCT
TTAGGAGAGTTGTTAATGGACTCACAAAGCTTGGAGAGACACGAAAGGAG
AAAATGAGAAACGGGGAAGACGTTTCCCACCAAGACGAGTTCTTAGATGA
AAATCGAAGGCGTCTGGGACATTTGCTTTCAAATTCTAAAGCAGAAGGAG
GACATTACAATGTTGATTTTCATGCTTGGGCAACAGATATTGAAAATGAT
ATACGAGCTCAAGATCCATTGATGTTGTCATTCGACTCTGCAGATGCGGA
TGTGTTTCCGAAAACTACTTCGTCACGCTTCCTTGACGAGGCTCAGACGA
TATCGAGTAAGGGCGGTGCGCTGTTGAATATTTTAAAGAGTAACGGAAAA
CTCTCACCGAAGCTTGGAAATCAAGGATCCACGAAATCTGTAGATCAGAG
TTTCTTTTGGTTGACAACAATAGCTTGGGTGTTTGCTGTCTTTGGAATGA
TGATAACAATAGGATTTCTTGCTGCTGACTTTTGGTACGCTCAAAAGCAC
GTTGCAATTCACGTAGAACGCTCTAAGCGACAACCGCAAGAACTCCCGGC
CATAACCATATGCAATTTCGCTTCGAACATTCAAAGCTTCTCTGACTATC
CAACCTCAGAGTATCCTGGCTTACCTATTTTCGGAATTCAGAGATTCATC
CGATACAATCAATCTACGGCTTCAGTTGTCTCCGACATTACATACCCCGG
CGTTTTGCCAGGCTCCCCGAAGACGCAGATAGAGGACGTAATCGTCGCGA
ATGATGAGTCTGAATGCGATGAAAGTAGTGGTTTAGATGTCAGAAGAGAA
ATGACAGCGATGCGATCGAACACCGATCTCAGTGTTCAAAACAGTTTGAA
CGGAAAAACCTGTCATCATTGCCTACGGTTGGGATACAAAAGAAGGCTTG
TGCTCCACCCCCCTCAGAACGAAGCAGATAGCATTCGACATCCGGCAATC
AATTTAATACTTTACAGAACGAAGCTATTTGCGGCTTGTCAGACAGAATA
TCATAGAAGGAACATCATGATTGTGTCTCTTTTCGTGGATGAAATACAGA
AGTATGCAGAAGAACTGGAAGGACAAGGGATTCTTGACTTCAACGACGAA
GACAAGGAAAAAGCTATTGGAGTAGACTGGTATCGAGTCGATAGTCAAAA
GTTTTTCGATTTCTGTTGCAATGTCTACTTTTTCTCCGGTTTCTTTTATC
CGTCACGGGACAATGCTGATATTTCTTATCGGTTCGATCACGATACTGCA
GAACGCTGGATGAAAACGGGATCTGGACCGTACTATTCTGCATTTACATG
GAGTTCTGATGATCCTGTAATTTCGGGTCCACATCGTTCGGTAATTGAAA
AGGATTTCTATACTTTTGACGCTCTGGAATTGTACATCGAAGAAGCAGAA
GGCATCAAGGGTTCCACAACAGTATCCCCTCACGCAAAGGTAGCTGCATT
TGAAGCAACTGACAAGACTCTGTACAGATTGAAGAAAGTATTGAATCAGG
GTAAGATTGAGTATAAAATCATTCAAAGCAAATCGGCTTCGCAGGAACTT
GCACTGAAGGCAGTAGATTTATACAACGTTCAATTTGACTTTGAAACGTT
TGAGACGGAAACGATCATCACGACTCCGACAATGACTTGGCCAGAATTTG
TTGTCGATGTGTTCGAGTTCATTGGATTGTTTACCGGAATTTGTATCTTC
ACGCTAATTGTTGCGCCTGCTCATTCGCTTGTGTACCCAAACTCAGAAAC
GGAACAAAAGTAA