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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 55529.EKX42984 |
| Preferred name | TRMU |
| PFAMs | tRNA_Me_trans |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K21027 |
| GOs | GO:0000959,GO:0000963,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0031974,GO:0031981,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061708,GO:0070013,GO:0070525,GO:0070899,GO:0070900,GO:0070903,GO:0071704,GO:0090304,GO:0090646,GO:0106054,GO:0140053,GO:0140098,GO:0140101,GO:1900864,GO:1901360,GO:1990799 |
| Evalue | 4.32e-54 |
| EggNOG OGs | COG0482@1|root,KOG2805@2759|Eukaryota |
| EC | 2.8.1.14 |
| Description | mitochondrial tRNA thio-modification |
| COG category | J |
| BRITE | ko00000,ko01000,ko03016 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil5350.t1 ID=Gchil5350.t1|Name=Gchil5350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=655bp MDKFFKKRPAVDIKDQSNKRPCHEISSHAEDEPILRSDPLVLVGWNCNGL TPRLRSESDVQAFRDFLVKYTPDVIFLSEVRISAAFKSASGKANSQAERL RSKMRQEDRKSCADASLVHSLMSTPELQSYKLHLSLADTKYSGTAMLWNK NTISGPKVVRYHLGREKSKRHHPEGRVIYAKFEHFSVLHTYSPNNGWEEK HFARRRAWDKQVKEFMERKRKSGIRVIWMGDLNVAPKNEDLSHASYCRQQ SKGDRSKLSPADVGLPGCTDAERDRFAEILEADSSVSAMILQEAGWRVKP VLMRCWDSEEDEGSTNCFDRELRAAELTVEKLGLEPLHVYDFVKEYWTDV FENVFLRGIRHGFVPNADLACNRWVKFGAFPERVAQVGGENAPIATGHYA MVQHTEKGTRLLAARDEVKDQSYFLGSVHESALRRVILPVGDLLKTEVVS IAADLRLAAAEAKSSRGICFVGKRSMSEFIEQYVELNEGGKFVDIDSCEV LGDVRNGWALTVGQRARIGGLAEARFVVGRRGRDIVVAPHEHEALRSRGV WCNKADWIGKEPQSITNGGEQEVCFKACSTMRMGRAWVKRENGGWSVRFD RERRKVGRGQAVVVYNGRECLGALWPVCEHGEEAGAQGLAQGMAEGCVVD GVGS* back to topspliced messenger RNA >Gchil5350.t1 ID=Gchil5350.t1|Name=Gchil5350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00004418_pilon:1190146..1193171- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACAAGTTCTTTAAGAAGCGACCAGCAGTTGATATCAAGGACCAAAG CAACAAGAGACCCTGTCACGAAATCTCCTCCCATGCTGAGGATGAGCCCA TCCTTCGTTCTGACCCACTCGTTCTTGTCGGATGGAATTGCAATGGTCTT ACGCCCCGCCTGCGTTCAGAGTCTGACGTCCAAGCTTTTCGAGACTTCTT GGTAAAGTACACCCCAGATGTCATATTCCTAAGCGAAGTTCGCATATCAG CTGCTTTTAAATCGGCATCTGGAAAGGCCAACTCTCAAGCGGAACGATTG AGAAGTAAAATGCGGCAAGAGGACAGAAAGTCATGCGCTGATGCTTCACT TGTGCATTCCTTAATGTCCACTCCGGAACTTCAATCTTATAAATTGCATT TGAGTCTGGCTGATACCAAATACTCGGGAACTGCAATGCTTTGGAACAAG AACACGATAAGCGGACCGAAGGTTGTGCGATACCACTTAGGTCGGGAAAA GTCAAAGAGACATCACCCAGAAGGTCGCGTCATTTACGCTAAGTTTGAGC ATTTTTCTGTTCTGCATACGTATTCCCCAAACAATGGCTGGGAAGAAAAG CACTTTGCTCGCAGGAGAGCCTGGGACAAGCAGGTAAAAGAATTCATGGA GCGTAAACGGAAATCCGGAATTCGAGTGATTTGGATGGGGGACTTGAATG TTGCGCCGAAAAATGAAGATCTCTCTCATGCATCATACTGCAGGCAGCAA TCAAAAGGGGATCGTTCCAAATTGTCTCCCGCGGATGTCGGTCTACCCGG ATGTACAGATGCAGAAAGAGATCGGTTTGCAGAAATTCTTGAGGCAGACT CCTCAGTTTCTGCAATGATTCTACAGGAGGCTGGATGGCGAGTGAAACCG GTACTGATGCGATGCTGGGACTCTGAAGAAGACGAGGGGAGCACAAATTG TTTCGACAGGGAGCTTCGCGCCGCCGAGCTCACTGTTGAAAAGTTGGGCT TGGAACCACTGCATGTGTATGACTTTGTCAAAGAATACTGGACAGATGTG TTTGAAAATGTGTTTTTGCGAGGTATTCGACACGGGTTTGTCCCCAACGC GGATCTGGCATGCAACAGATGGGTGAAGTTTGGCGCGTTCCCAGAGCGTG TTGCTCAGGTGGGGGGTGAAAACGCACCGATTGCGACGGGCCACTACGCA ATGGTGCAGCATACAGAGAAGGGGACTAGGCTTTTGGCAGCGCGTGATGA AGTTAAGGATCAGAGCTACTTTTTGGGTAGCGTGCACGAATCGGCTCTGC GAAGGGTTATTCTGCCCGTGGGCGACTTGCTCAAAACTGAAGTAGTATCT ATTGCGGCCGATTTGCGACTTGCGGCTGCGGAAGCCAAGAGCAGTCGTGG GATTTGTTTTGTCGGGAAACGTAGCATGAGTGAGTTTATTGAACAGTATG TGGAGCTGAATGAAGGAGGAAAGTTTGTGGATATAGACAGCTGTGAGGTG TTGGGAGATGTGAGGAACGGGTGGGCGCTAACGGTCGGGCAGAGAGCGAG GATCGGTGGTTTGGCGGAAGCGAGATTTGTGGTCGGGAGGCGTGGGAGGG ACATAGTGGTAGCACCACACGAGCACGAGGCGTTGAGGAGCAGAGGAGTT TGGTGTAACAAGGCGGACTGGATCGGAAAGGAGCCACAGTCGATCACGAA CGGAGGCGAACAAGAAGTTTGTTTCAAGGCGTGCTCGACCATGCGCATGG GAAGAGCGTGGGTGAAGCGGGAGAATGGGGGCTGGTCGGTGCGCTTCGAT AGGGAAAGAAGGAAGGTAGGTCGCGGACAGGCGGTGGTGGTGTACAACGG CAGGGAATGCCTCGGGGCTCTGTGGCCTGTGTGTGAGCACGGCGAAGAAG CCGGCGCACAGGGGCTGGCGCAGGGCATGGCAGAGGGGTGTGTGGTGGAC GGAGTCGGTTCGTAG back to topprotein sequence of Gchil5350.t1 >Gchil5350.t1 ID=Gchil5350.t1|Name=Gchil5350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=655bp
MDKFFKKRPAVDIKDQSNKRPCHEISSHAEDEPILRSDPLVLVGWNCNGL TPRLRSESDVQAFRDFLVKYTPDVIFLSEVRISAAFKSASGKANSQAERL RSKMRQEDRKSCADASLVHSLMSTPELQSYKLHLSLADTKYSGTAMLWNK NTISGPKVVRYHLGREKSKRHHPEGRVIYAKFEHFSVLHTYSPNNGWEEK HFARRRAWDKQVKEFMERKRKSGIRVIWMGDLNVAPKNEDLSHASYCRQQ SKGDRSKLSPADVGLPGCTDAERDRFAEILEADSSVSAMILQEAGWRVKP VLMRCWDSEEDEGSTNCFDRELRAAELTVEKLGLEPLHVYDFVKEYWTDV FENVFLRGIRHGFVPNADLACNRWVKFGAFPERVAQVGGENAPIATGHYA MVQHTEKGTRLLAARDEVKDQSYFLGSVHESALRRVILPVGDLLKTEVVS IAADLRLAAAEAKSSRGICFVGKRSMSEFIEQYVELNEGGKFVDIDSCEV LGDVRNGWALTVGQRARIGGLAEARFVVGRRGRDIVVAPHEHEALRSRGV WCNKADWIGKEPQSITNGGEQEVCFKACSTMRMGRAWVKRENGGWSVRFD RERRKVGRGQAVVVYNGRECLGALWPVCEHGEEAGAQGLAQGMAEGCVVD GVGS* back to topmRNA from alignment at tig00004418_pilon:1190146..1193171- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil5350.t1 ID=Gchil5350.t1|Name=Gchil5350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=3026bp|location=Sequence derived from alignment at tig00004418_pilon:1190146..1193171- (Gracilaria chilensis NLEC103_M9 male) ATGGACAAGTTCTTTAAGAAGCGACCAGCAGTTGATATCAAGGACCAAAG
CAACAAGAGACCCTGTCACGAAATCTCCTCCCATGCTGAGGATGAGCCCA
TCCTTCGTTCTGACCCACTCGTTCTTGTCGTATGTCCCGTTTTCTCTCAC
CTCATTTACGACTATACCAAGCACTCTTCTTACATTCTAACTGGATCTTG
TTTTCCACAATTCAAAAATTCTGAAGGGATGGAATTGCAATGGTCTTACG
CCCCGCCTGCGTTCAGAGTCTGACGTCCAAGCTTTTCGAGACTTCTTGGT
AAAGTACACCCCAGATGTCATATTCCTAAGCGAAGTTCGCATATCAGCTG
CTTTTAAATCGGCATCTGGAAAGGCCAACTCTCAAGCGGAACGATTGAGA
AGTAAAATGCGGCAAGAGGACAGAAAGTCATGCGCTGATGCTTCACTTGT
GCATTCCTTAATGTCCACTCCGGAACTTCAATCTTATAAATTGCATTTGA
GTCTGGCTGATACCAAATACTCGGGAACTGCAATGCTTTGGAACAAGAAC
ACGATAAGCGGACCGAAGGTTGTGCGATACCACTTAGGTCGGGAAAAGTC
AAAGAGACATCACCCAGAAGGTCGCGTCATTTACGCTAAGTTTGAGCATT
TTTCTGTTCTGCATACGTGAGTGAGCAATCTTGTCTACGCGTTTGTGGAT
TCTATCACGGGGAATACTGCCACGAGTTGGTTTCTGGGGTTTCAGAATTG
CTAACCTATTGTCATTCAAATCATTCCCCGAAAGGTATTCCCCAAACAAT
GGCTGGGAAGAAAAGCACTTTGCTCGCAGGAGAGCCTGGGACAAGCAGGT
AAAAGAATTCATGGAGCGTAAACGGAAATCCGGAATTCGAGTGATTTGGA
TGGGGGACTTGGTACGTTGCACTTGGTGTGGTGTTCGAATAATTCTTTGT
TTATTGCGAAACAGAATGCTAATTTGTGCAACACGGTACGAAAACCTTTC
ACAACACAGAATGTTGCGCCGAAAAATGAAGATCTCTCTCATGCATCATA
CTGCAGGCAGCAATCAAAAGGGGATCGTTCCAAATTGTCTCCCGCGGATG
TCGGTCTACCCGGATGTACAGATGCAGAAAGAGATCGGTTTGCAGAAATT
CTTGAGGCAGGTAATATGGTTGACGCTTACCGACATCTCGTGGGAGACAG
TAATAGTCCAAGTTTAACTTGGCGGGGACATCCTACCGGAAAACACGCTG
GACGGGGAATGAGAATCGACCATTGTATAGTATCGAGAGAACTGGTCTCC
CGCGTGGCTTCCGTTGAGGTAACGGGACACGGGGCGGATAGACAAGGATT
TCTCGGATCAGACCATTGTCCTATTGTCGTTCGTCTACAGGAACAGAGGC
GCGTTTGACTCGTTGTTGACTGCCGTATCTGGTGATCCCCATATGTTTGA
CTTTTTCCTCGGTGTTTATCTGTGAAGGGGAGAGTACAGGCAACTGATCG
AGCATGTTAAGCTTCAGGGCCGGCGCGTCATTGCCATAAATCCCTTCAGC
CATTTTTCCTGGATCATTCTTCGCAATTTTCAAAAGGTAAAGGGCTACTC
CTTAACTTCCTGTGAGGGCTTTGAACTCAATTCGTGCATATTCAGGGGGG
GTGTTGTGCTTTGGTCTTTCGAGGAGCTTGACCACTTTTTATGGGCTTTG
TTCTGAATCGGTGTTCAGAACGCCTTTAATTTTTGTCGTCGTATCACTCG
GTATGGCCCATGGACTTTGCAGTTTGGAAGCGTGCATCGTTTAAACATGA
CAAACAGAATGAGAGCTGTGACTGAACTAGTTAACTACGCGGTAAGGACG
GTTTCAAAGCCTCCTCAGAAGCATTCTTCAATATATCTTGCTCTATCTGG
CGGTGTAGACTCCTCAGTTTCTGCAATGATTCTACAGGAGGCTGGATGGC
GAGTGAAACCGGTACTGATGCGATGCTGGGACTCTGAAGAAGACGAGGGG
AGCACAAATTGTTTCGACAGGGAGCTTCGCGCCGCCGAGCTCACTGTTGA
AAAGTTGGGCTTGGAACCACTGCATGTGTATGACTTTGTCAAAGAATACT
GGACAGATGTGTTTGAAAATGTGTTTTTGCGAGGTATTCGACACGGGTTT
GTCCCCAACGCGGATCTGGCATGCAACAGATGGGTGAAGTTTGGCGCGTT
CCCAGAGCGTGTTGCTCAGGTGGGGGGTGAAAACGCACCGATTGCGACGG
GCCACTACGCAATGGTGCAGCATACAGAGAAGGGGACTAGGCTTTTGGCA
GCGCGTGATGAAGTTAAGGATCAGAGCTACTTTTTGGGTAGCGTGCACGA
ATCGGCTCTGCGAAGGGTTATTCTGCCCGTGGGCGACTTGCTCAAAACTG
AAGTAGTATCTATTGCGGCCGATTTGCGACTTGCGGCTGCGGAAGCCAAG
AGCAGTCGTGGGATTTGTTTTGTCGGGAAACGTAGCATGAGTGAGTTTAT
TGAACAGTATGTGGAGCTGAATGAAGGAGGAAAGTTTGTGGATATAGACA
GCTGTGAGGTGTTGGGAGATGTGAGGAACGGGTGGGCGCTAACGGTCGGG
CAGAGAGCGAGGATCGGTGGTTTGGCGGAAGCGAGATTTGTGGTCGGGAG
GCGTGGGAGGGACATAGTGGTAGCACCACACGAGCACGAGGCGTTGAGGA
GCAGAGGAGTTTGGTGTAACAAGGCGGACTGGATCGGAAAGGAGCCACAG
TCGATCACGAACGGAGGCGAACAAGAAGTTTGTTTCAAGGCGTGCTCGAC
CATGCGCATGGGAAGAGCGTGGGTGAAGCGGGAGAATGGGGGCTGGTCGG
TGCGCTTCGATAGGGAAAGAAGGAAGGTAGGTCGCGGACAGGCGGTGGTG
GTGTACAACGGCAGGGAATGCCTCGGGGCTCTGTGGCCTGTGTGTGAGCA
CGGCGAAGAAGCCGGCGCACAGGGGCTGGCGCAGGGCATGGCAGAGGGGT
GTGTGGTGGACGGAGTCGGTTCGTAG back to topCoding sequence (CDS) from alignment at tig00004418_pilon:1190146..1193171- >Gchil5350.t1 ID=Gchil5350.t1|Name=Gchil5350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00004418_pilon:1190146..1193171- (Gracilaria chilensis NLEC103_M9 male) ATGGACAAGTTCTTTAAGAAGCGACCAGCAGTTGATATCAAGGACCAAAG CAACAAGAGACCCTGTCACGAAATCTCCTCCCATGCTGAGGATGAGCCCA TCCTTCGTTCTGACCCACTCGTTCTTGTCGGATGGAATTGCAATGGTCTT ACGCCCCGCCTGCGTTCAGAGTCTGACGTCCAAGCTTTTCGAGACTTCTT GGTAAAGTACACCCCAGATGTCATATTCCTAAGCGAAGTTCGCATATCAG CTGCTTTTAAATCGGCATCTGGAAAGGCCAACTCTCAAGCGGAACGATTG AGAAGTAAAATGCGGCAAGAGGACAGAAAGTCATGCGCTGATGCTTCACT TGTGCATTCCTTAATGTCCACTCCGGAACTTCAATCTTATAAATTGCATT TGAGTCTGGCTGATACCAAATACTCGGGAACTGCAATGCTTTGGAACAAG AACACGATAAGCGGACCGAAGGTTGTGCGATACCACTTAGGTCGGGAAAA GTCAAAGAGACATCACCCAGAAGGTCGCGTCATTTACGCTAAGTTTGAGC ATTTTTCTGTTCTGCATACGTATTCCCCAAACAATGGCTGGGAAGAAAAG CACTTTGCTCGCAGGAGAGCCTGGGACAAGCAGGTAAAAGAATTCATGGA GCGTAAACGGAAATCCGGAATTCGAGTGATTTGGATGGGGGACTTGAATG TTGCGCCGAAAAATGAAGATCTCTCTCATGCATCATACTGCAGGCAGCAA TCAAAAGGGGATCGTTCCAAATTGTCTCCCGCGGATGTCGGTCTACCCGG ATGTACAGATGCAGAAAGAGATCGGTTTGCAGAAATTCTTGAGGCAGACT CCTCAGTTTCTGCAATGATTCTACAGGAGGCTGGATGGCGAGTGAAACCG GTACTGATGCGATGCTGGGACTCTGAAGAAGACGAGGGGAGCACAAATTG TTTCGACAGGGAGCTTCGCGCCGCCGAGCTCACTGTTGAAAAGTTGGGCT TGGAACCACTGCATGTGTATGACTTTGTCAAAGAATACTGGACAGATGTG TTTGAAAATGTGTTTTTGCGAGGTATTCGACACGGGTTTGTCCCCAACGC GGATCTGGCATGCAACAGATGGGTGAAGTTTGGCGCGTTCCCAGAGCGTG TTGCTCAGGTGGGGGGTGAAAACGCACCGATTGCGACGGGCCACTACGCA ATGGTGCAGCATACAGAGAAGGGGACTAGGCTTTTGGCAGCGCGTGATGA AGTTAAGGATCAGAGCTACTTTTTGGGTAGCGTGCACGAATCGGCTCTGC GAAGGGTTATTCTGCCCGTGGGCGACTTGCTCAAAACTGAAGTAGTATCT ATTGCGGCCGATTTGCGACTTGCGGCTGCGGAAGCCAAGAGCAGTCGTGG GATTTGTTTTGTCGGGAAACGTAGCATGAGTGAGTTTATTGAACAGTATG TGGAGCTGAATGAAGGAGGAAAGTTTGTGGATATAGACAGCTGTGAGGTG TTGGGAGATGTGAGGAACGGGTGGGCGCTAACGGTCGGGCAGAGAGCGAG GATCGGTGGTTTGGCGGAAGCGAGATTTGTGGTCGGGAGGCGTGGGAGGG ACATAGTGGTAGCACCACACGAGCACGAGGCGTTGAGGAGCAGAGGAGTT TGGTGTAACAAGGCGGACTGGATCGGAAAGGAGCCACAGTCGATCACGAA CGGAGGCGAACAAGAAGTTTGTTTCAAGGCGTGCTCGACCATGCGCATGG GAAGAGCGTGGGTGAAGCGGGAGAATGGGGGCTGGTCGGTGCGCTTCGAT AGGGAAAGAAGGAAGGTAGGTCGCGGACAGGCGGTGGTGGTGTACAACGG CAGGGAATGCCTCGGGGCTCTGTGGCCTGTGTGTGAGCACGGCGAAGAAG CCGGCGCACAGGGGCTGGCGCAGGGCATGGCAGAGGGGTGTGTGGTGGAC GGAGTCGGTTCGTAG back to top
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