Gchil5347.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5347.t1
Unique NameGchil5347.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1182968..1184428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002670434.1
PFAMsPkinase,cNMP_binding
Max annot lvl2759|Eukaryota
KEGG koko:K05869,ko:K08794,ko:K17530
KEGG Pathwayko04020,ko04024,ko04211,ko04371,ko04380,ko04720,ko04722,ko04725,ko04921,ko04925,ko05031,ko05034,map04020,map04024,map04211,map04371,map04380,map04720,map04722,map04725,map04921,map04925,map05031,map05034
Evalue1.07e-70
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.1,2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5347Gchil5347Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1182968..1184428 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5347.t1.stop1Gchil5347.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1182968..1182970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5347.t1.CDS1Gchil5347.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1182968..1184428 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5347.t1.exon1Gchil5347.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1182968..1184428 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5347.t1.start1Gchil5347.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1184426..1184428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5347.t1Gchil5347.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1182968..1184428 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5347.t1 ID=Gchil5347.t1|Name=Gchil5347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=487bp
MQVLPTMSVNISADQCPSFPQSKTILDAYQIGHQLGRGCFAKVFKALRKR
DNEPVAIKVIEKKLLDDETSDLLHNELRILQAVCEHPGIVTLLSSHETDT
HMFFIMEYVDGGPLLDRIVSRGSFSENDARILLRTLLLTLRFLSDLGCVH
RDIKPENILVDNRSNKWPVKLTDFGLSEKMQPNQLLTDAIGTPLFVAPEI
LNGSGYDCSCDMWSLGVVMYIVLCGYPPFPIYDNPQKLTTAIVNGDYSFP
PGEWTHVSVAAKTVIREMLQINPEKRLTPAQALVHPWIRMSQSTTDLPNS
KLKSFNARRKLKAGVMAVRTTFGLRNILGRDGLRSGVIDHETLIRNVERN
RALIARATKSYGDSSDRAKDDAHESRSILVNPAFLSCRRSLILSVNALAN
IQASDDAKASQRSRLDLNGALQSANLLLSDSEALQSKALAMAAEAKESSS
IDGANPFMTRTESETGQCTDKNHFSLEPLDFENLGM*
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spliced messenger RNA

>Gchil5347.t1 ID=Gchil5347.t1|Name=Gchil5347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00004418_pilon:1182968..1184428- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTGCTCCCCACTATGAGCGTGAATATATCTGCTGATCAGTGCCC
GTCGTTTCCGCAATCCAAAACCATTCTCGACGCCTATCAGATTGGACATC
AGCTAGGCCGCGGTTGCTTCGCAAAGGTTTTCAAAGCGCTTCGGAAGCGA
GACAATGAGCCCGTTGCAATCAAAGTAATTGAGAAGAAGCTATTGGACGA
TGAAACATCCGACCTTCTTCACAATGAACTCCGTATACTGCAAGCCGTAT
GTGAGCATCCGGGCATCGTAACACTTCTTAGCAGTCATGAGACAGACACT
CACATGTTTTTCATCATGGAGTATGTCGATGGCGGCCCTTTGCTTGACAG
AATCGTATCGAGAGGCTCATTCAGTGAGAACGACGCACGGATTCTGCTTC
GAACCCTTCTTCTTACCTTGCGTTTCCTGAGCGATCTTGGTTGTGTGCAC
CGCGATATTAAGCCTGAGAACATTCTTGTCGACAATCGCAGCAATAAGTG
GCCTGTAAAGCTCACTGACTTTGGTCTTTCAGAGAAGATGCAACCTAATC
AACTTCTGACTGATGCTATAGGAACGCCCCTTTTCGTGGCACCAGAAATT
TTAAACGGAAGTGGCTACGATTGTTCGTGTGACATGTGGAGCCTTGGAGT
GGTCATGTATATCGTTCTTTGCGGTTATCCACCTTTCCCTATATATGACA
ATCCACAGAAGCTAACCACCGCAATCGTGAATGGTGATTACTCCTTCCCA
CCCGGCGAATGGACCCATGTGTCAGTTGCCGCCAAAACCGTTATAAGAGA
AATGTTACAGATTAATCCCGAAAAGCGGCTCACTCCCGCCCAAGCGTTGG
TGCACCCATGGATTCGAATGTCTCAATCTACAACTGATCTACCCAACAGT
AAGCTCAAGTCGTTCAATGCTAGACGAAAGCTAAAGGCTGGGGTGATGGC
AGTTCGCACTACTTTCGGATTGCGCAACATTCTAGGACGAGATGGACTCC
GTTCTGGAGTCATCGATCACGAAACTCTGATAAGGAACGTCGAGCGAAAT
CGGGCTCTGATAGCTCGTGCAACAAAGTCATATGGCGATTCTTCCGACAG
AGCAAAGGATGACGCACATGAATCAAGATCTATCCTAGTGAATCCGGCGT
TTTTATCGTGCAGACGGTCCCTGATTTTGTCTGTCAATGCCCTTGCAAAT
ATTCAAGCATCCGATGATGCGAAAGCCTCTCAACGAAGCAGACTGGATCT
TAATGGTGCTTTGCAATCTGCAAATCTGTTGCTCAGTGACTCAGAAGCAC
TGCAATCAAAAGCTTTAGCAATGGCTGCAGAAGCTAAGGAAAGTTCTAGT
ATCGATGGTGCAAATCCTTTTATGACCAGGACGGAGAGCGAGACCGGTCA
ATGCACCGACAAGAACCATTTCAGTCTTGAACCTCTTGATTTCGAAAATC
TAGGAATGTAA
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protein sequence of Gchil5347.t1

>Gchil5347.t1 ID=Gchil5347.t1|Name=Gchil5347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=487bp
MQVLPTMSVNISADQCPSFPQSKTILDAYQIGHQLGRGCFAKVFKALRKR
DNEPVAIKVIEKKLLDDETSDLLHNELRILQAVCEHPGIVTLLSSHETDT
HMFFIMEYVDGGPLLDRIVSRGSFSENDARILLRTLLLTLRFLSDLGCVH
RDIKPENILVDNRSNKWPVKLTDFGLSEKMQPNQLLTDAIGTPLFVAPEI
LNGSGYDCSCDMWSLGVVMYIVLCGYPPFPIYDNPQKLTTAIVNGDYSFP
PGEWTHVSVAAKTVIREMLQINPEKRLTPAQALVHPWIRMSQSTTDLPNS
KLKSFNARRKLKAGVMAVRTTFGLRNILGRDGLRSGVIDHETLIRNVERN
RALIARATKSYGDSSDRAKDDAHESRSILVNPAFLSCRRSLILSVNALAN
IQASDDAKASQRSRLDLNGALQSANLLLSDSEALQSKALAMAAEAKESSS
IDGANPFMTRTESETGQCTDKNHFSLEPLDFENLGM*
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mRNA from alignment at tig00004418_pilon:1182968..1184428-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5347.t1 ID=Gchil5347.t1|Name=Gchil5347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00004418_pilon:1182968..1184428- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTGCTCCCCACTATGAGCGTGAATATATCTGCTGATCAGTGCCC
GTCGTTTCCGCAATCCAAAACCATTCTCGACGCCTATCAGATTGGACATC
AGCTAGGCCGCGGTTGCTTCGCAAAGGTTTTCAAAGCGCTTCGGAAGCGA
GACAATGAGCCCGTTGCAATCAAAGTAATTGAGAAGAAGCTATTGGACGA
TGAAACATCCGACCTTCTTCACAATGAACTCCGTATACTGCAAGCCGTAT
GTGAGCATCCGGGCATCGTAACACTTCTTAGCAGTCATGAGACAGACACT
CACATGTTTTTCATCATGGAGTATGTCGATGGCGGCCCTTTGCTTGACAG
AATCGTATCGAGAGGCTCATTCAGTGAGAACGACGCACGGATTCTGCTTC
GAACCCTTCTTCTTACCTTGCGTTTCCTGAGCGATCTTGGTTGTGTGCAC
CGCGATATTAAGCCTGAGAACATTCTTGTCGACAATCGCAGCAATAAGTG
GCCTGTAAAGCTCACTGACTTTGGTCTTTCAGAGAAGATGCAACCTAATC
AACTTCTGACTGATGCTATAGGAACGCCCCTTTTCGTGGCACCAGAAATT
TTAAACGGAAGTGGCTACGATTGTTCGTGTGACATGTGGAGCCTTGGAGT
GGTCATGTATATCGTTCTTTGCGGTTATCCACCTTTCCCTATATATGACA
ATCCACAGAAGCTAACCACCGCAATCGTGAATGGTGATTACTCCTTCCCA
CCCGGCGAATGGACCCATGTGTCAGTTGCCGCCAAAACCGTTATAAGAGA
AATGTTACAGATTAATCCCGAAAAGCGGCTCACTCCCGCCCAAGCGTTGG
TGCACCCATGGATTCGAATGTCTCAATCTACAACTGATCTACCCAACAGT
AAGCTCAAGTCGTTCAATGCTAGACGAAAGCTAAAGGCTGGGGTGATGGC
AGTTCGCACTACTTTCGGATTGCGCAACATTCTAGGACGAGATGGACTCC
GTTCTGGAGTCATCGATCACGAAACTCTGATAAGGAACGTCGAGCGAAAT
CGGGCTCTGATAGCTCGTGCAACAAAGTCATATGGCGATTCTTCCGACAG
AGCAAAGGATGACGCACATGAATCAAGATCTATCCTAGTGAATCCGGCGT
TTTTATCGTGCAGACGGTCCCTGATTTTGTCTGTCAATGCCCTTGCAAAT
ATTCAAGCATCCGATGATGCGAAAGCCTCTCAACGAAGCAGACTGGATCT
TAATGGTGCTTTGCAATCTGCAAATCTGTTGCTCAGTGACTCAGAAGCAC
TGCAATCAAAAGCTTTAGCAATGGCTGCAGAAGCTAAGGAAAGTTCTAGT
ATCGATGGTGCAAATCCTTTTATGACCAGGACGGAGAGCGAGACCGGTCA
ATGCACCGACAAGAACCATTTCAGTCTTGAACCTCTTGATTTCGAAAATC
TAGGAATGTAA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1182968..1184428-

>Gchil5347.t1 ID=Gchil5347.t1|Name=Gchil5347.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00004418_pilon:1182968..1184428- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTGCTCCCCACTATGAGCGTGAATATATCTGCTGATCAGTGCCC
GTCGTTTCCGCAATCCAAAACCATTCTCGACGCCTATCAGATTGGACATC
AGCTAGGCCGCGGTTGCTTCGCAAAGGTTTTCAAAGCGCTTCGGAAGCGA
GACAATGAGCCCGTTGCAATCAAAGTAATTGAGAAGAAGCTATTGGACGA
TGAAACATCCGACCTTCTTCACAATGAACTCCGTATACTGCAAGCCGTAT
GTGAGCATCCGGGCATCGTAACACTTCTTAGCAGTCATGAGACAGACACT
CACATGTTTTTCATCATGGAGTATGTCGATGGCGGCCCTTTGCTTGACAG
AATCGTATCGAGAGGCTCATTCAGTGAGAACGACGCACGGATTCTGCTTC
GAACCCTTCTTCTTACCTTGCGTTTCCTGAGCGATCTTGGTTGTGTGCAC
CGCGATATTAAGCCTGAGAACATTCTTGTCGACAATCGCAGCAATAAGTG
GCCTGTAAAGCTCACTGACTTTGGTCTTTCAGAGAAGATGCAACCTAATC
AACTTCTGACTGATGCTATAGGAACGCCCCTTTTCGTGGCACCAGAAATT
TTAAACGGAAGTGGCTACGATTGTTCGTGTGACATGTGGAGCCTTGGAGT
GGTCATGTATATCGTTCTTTGCGGTTATCCACCTTTCCCTATATATGACA
ATCCACAGAAGCTAACCACCGCAATCGTGAATGGTGATTACTCCTTCCCA
CCCGGCGAATGGACCCATGTGTCAGTTGCCGCCAAAACCGTTATAAGAGA
AATGTTACAGATTAATCCCGAAAAGCGGCTCACTCCCGCCCAAGCGTTGG
TGCACCCATGGATTCGAATGTCTCAATCTACAACTGATCTACCCAACAGT
AAGCTCAAGTCGTTCAATGCTAGACGAAAGCTAAAGGCTGGGGTGATGGC
AGTTCGCACTACTTTCGGATTGCGCAACATTCTAGGACGAGATGGACTCC
GTTCTGGAGTCATCGATCACGAAACTCTGATAAGGAACGTCGAGCGAAAT
CGGGCTCTGATAGCTCGTGCAACAAAGTCATATGGCGATTCTTCCGACAG
AGCAAAGGATGACGCACATGAATCAAGATCTATCCTAGTGAATCCGGCGT
TTTTATCGTGCAGACGGTCCCTGATTTTGTCTGTCAATGCCCTTGCAAAT
ATTCAAGCATCCGATGATGCGAAAGCCTCTCAACGAAGCAGACTGGATCT
TAATGGTGCTTTGCAATCTGCAAATCTGTTGCTCAGTGACTCAGAAGCAC
TGCAATCAAAAGCTTTAGCAATGGCTGCAGAAGCTAAGGAAAGTTCTAGT
ATCGATGGTGCAAATCCTTTTATGACCAGGACGGAGAGCGAGACCGGTCA
ATGCACCGACAAGAACCATTTCAGTCTTGAACCTCTTGATTTCGAAAATC
TAGGAATGTAA
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