Gchil5338.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5338.t1
Unique NameGchil5338.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1144114..1144957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8081.XP_008424774.1
Preferred nameSBDS
PFAMsSBDS,SBDS_C
Max annot lvl33208|Metazoa
KEGG koko:K14574
KEGG Pathwayko03008,map03008
GOsGO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0001503,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010467,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0019843,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030282,GO:0030595,GO:0031214,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042330,GO:0043009,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0048513,GO:0048534,GO:0048539,GO:0048589,GO:0048731,GO:0048856,GO:0048870,GO:0050896,GO:0050900,GO:0051179,GO:0051674,GO:0051716,GO:0060326,GO:0060348,GO:0065003,GO:0070013,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902850,GO:1903047
Evalue1.78e-90
EggNOG OGsCOG1500@1|root,KOG2917@2759|Eukaryota,38DFK@33154|Opisthokonta,3BCDI@33208|Metazoa,3CSVQ@33213|Bilateria,481W1@7711|Chordata,48V91@7742|Vertebrata,49TIB@7898|Actinopterygii
DescriptionRibosome maturation protein
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5338Gchil5338Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1144114..1144957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5338.t1Gchil5338.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1144114..1144957 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5338.t1.stop1Gchil5338.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1144114..1144116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5338.t1.CDS1Gchil5338.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1144114..1144413 -
Gchil5338.t1.CDS2Gchil5338.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1144502..1144957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5338.t1.exon1Gchil5338.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1144114..1144413 -
Gchil5338.t1.exon2Gchil5338.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1144502..1144957 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5338.t1.intron1Gchil5338.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1144414..1144501 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5338.t1.start1Gchil5338.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1144955..1144957 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5338.t1 ID=Gchil5338.t1|Name=Gchil5338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp
MSLKQPVTQVRLTNIAVVRLKRKGKRFELACYKNKVVSWRQGNEEDLDDV
LQTTSIFSNVSKGILAKNKDLKDAFKTEDTQEIVLEILRKGELQVSERER
QYQTDNLFNEIAVIVSEKCVDPDTNRPFSVGIIERAMKDTLHYAVLPNKA
AKVQAQTVIKELQNHMPISRAQMRLELSVPLSRAKAVKEKLKPHVKTWEQ
EDWEADYNGIILIDPGSFRVIDEVLREETKGQGTFDVLSMAVVEDNDEQL
T*
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spliced messenger RNA

>Gchil5338.t1 ID=Gchil5338.t1|Name=Gchil5338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00004418_pilon:1144114..1144957- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTAAAGCAACCGGTGACGCAGGTGCGACTCACAAATATCGCAGT
AGTGCGGCTGAAGCGAAAAGGAAAACGCTTTGAGTTAGCCTGCTACAAGA
ACAAAGTAGTTTCATGGCGCCAAGGAAATGAAGAGGACTTAGACGATGTC
TTGCAAACTACCAGCATTTTTAGCAATGTGTCGAAGGGAATTCTGGCCAA
AAACAAGGACCTGAAAGACGCTTTTAAGACCGAAGACACTCAGGAAATCG
TGCTCGAGATTCTCCGAAAAGGAGAGCTACAGGTTTCCGAAAGGGAGAGG
CAGTATCAGACGGACAATCTATTCAATGAGATCGCTGTTATTGTCTCAGA
GAAATGCGTTGATCCCGATACAAACCGTCCTTTTAGTGTAGGAATCATCG
AGCGAGCTATGAAGGACACATTGCATTATGCTGTTCTTCCCAACAAGGCC
GCGAAAGTACAAGCACAGACTGTTATAAAAGAACTTCAGAATCACATGCC
GATAAGCCGTGCTCAGATGCGATTGGAGTTAAGCGTACCTTTATCACGAG
CAAAAGCTGTCAAAGAAAAACTGAAGCCCCATGTAAAGACATGGGAGCAA
GAAGACTGGGAGGCAGATTATAATGGCATCATTCTTATTGACCCTGGGAG
TTTCCGCGTCATTGATGAAGTGCTCCGAGAAGAAACAAAGGGACAGGGAA
CTTTTGATGTTCTCAGTATGGCTGTCGTCGAAGATAACGATGAGCAACTC
ACATGA
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protein sequence of Gchil5338.t1

>Gchil5338.t1 ID=Gchil5338.t1|Name=Gchil5338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=252bp
MSLKQPVTQVRLTNIAVVRLKRKGKRFELACYKNKVVSWRQGNEEDLDDV
LQTTSIFSNVSKGILAKNKDLKDAFKTEDTQEIVLEILRKGELQVSERER
QYQTDNLFNEIAVIVSEKCVDPDTNRPFSVGIIERAMKDTLHYAVLPNKA
AKVQAQTVIKELQNHMPISRAQMRLELSVPLSRAKAVKEKLKPHVKTWEQ
EDWEADYNGIILIDPGSFRVIDEVLREETKGQGTFDVLSMAVVEDNDEQL
T*
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mRNA from alignment at tig00004418_pilon:1144114..1144957-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5338.t1 ID=Gchil5338.t1|Name=Gchil5338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=844bp|location=Sequence derived from alignment at tig00004418_pilon:1144114..1144957- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCTAAAGCAACCGGTGACGCAGGTGCGACTCACAAATATCGCAGT
AGTGCGGCTGAAGCGAAAAGGAAAACGCTTTGAGTTAGCCTGCTACAAGA
ACAAAGTAGTTTCATGGCGCCAAGGAAATGAAGAGGACTTAGACGATGTC
TTGCAAACTACCAGCATTTTTAGCAATGTGTCGAAGGGAATTCTGGCCAA
AAACAAGGACCTGAAAGACGCTTTTAAGACCGAAGACACTCAGGAAATCG
TGCTCGAGATTCTCCGAAAAGGAGAGCTACAGGTTTCCGAAAGGGAGAGG
CAGTATCAGACGGACAATCTATTCAATGAGATCGCTGTTATTGTCTCAGA
GAAATGCGTTGATCCCGATACAAACCGTCCTTTTAGTGTAGGAATCATCG
AGCGAGCTATGAAGGACACATTGCATTATGCTGTTCTTCCCAACAAGGCC
GCGAAAGTAAGCAACTCCGAAGATCTCTTGCATGCGTCGAAACTAGATGA
GAAACATAACCTAATCGAACTCTAATGTTTTTCCTTCATTGCAGGTACAA
GCACAGACTGTTATAAAAGAACTTCAGAATCACATGCCGATAAGCCGTGC
TCAGATGCGATTGGAGTTAAGCGTACCTTTATCACGAGCAAAAGCTGTCA
AAGAAAAACTGAAGCCCCATGTAAAGACATGGGAGCAAGAAGACTGGGAG
GCAGATTATAATGGCATCATTCTTATTGACCCTGGGAGTTTCCGCGTCAT
TGATGAAGTGCTCCGAGAAGAAACAAAGGGACAGGGAACTTTTGATGTTC
TCAGTATGGCTGTCGTCGAAGATAACGATGAGCAACTCACATGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:1144114..1144957-

>Gchil5338.t1 ID=Gchil5338.t1|Name=Gchil5338.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00004418_pilon:1144114..1144957- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCTAAAGCAACCGGTGACGCAGGTGCGACTCACAAATATCGCAGT
AGTGCGGCTGAAGCGAAAAGGAAAACGCTTTGAGTTAGCCTGCTACAAGA
ACAAAGTAGTTTCATGGCGCCAAGGAAATGAAGAGGACTTAGACGATGTC
TTGCAAACTACCAGCATTTTTAGCAATGTGTCGAAGGGAATTCTGGCCAA
AAACAAGGACCTGAAAGACGCTTTTAAGACCGAAGACACTCAGGAAATCG
TGCTCGAGATTCTCCGAAAAGGAGAGCTACAGGTTTCCGAAAGGGAGAGG
CAGTATCAGACGGACAATCTATTCAATGAGATCGCTGTTATTGTCTCAGA
GAAATGCGTTGATCCCGATACAAACCGTCCTTTTAGTGTAGGAATCATCG
AGCGAGCTATGAAGGACACATTGCATTATGCTGTTCTTCCCAACAAGGCC
GCGAAAGTACAAGCACAGACTGTTATAAAAGAACTTCAGAATCACATGCC
GATAAGCCGTGCTCAGATGCGATTGGAGTTAAGCGTACCTTTATCACGAG
CAAAAGCTGTCAAAGAAAAACTGAAGCCCCATGTAAAGACATGGGAGCAA
GAAGACTGGGAGGCAGATTATAATGGCATCATTCTTATTGACCCTGGGAG
TTTCCGCGTCATTGATGAAGTGCTCCGAGAAGAAACAAAGGGACAGGGAA
CTTTTGATGTTCTCAGTATGGCTGTCGTCGAAGATAACGATGAGCAACTC
ACATGA
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