Gchil5236.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5236.t1
Unique NameGchil5236.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length550
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:112845..114494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FQZ7
PFAMsDicer_dimer,Helicase_C,ResIII,Ribonuclease_3
Max annot lvl2759|Eukaryota
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Evalue1.24e-110
EggNOG OGsCOG0571@1|root,COG1111@1|root,KOG0354@2759|Eukaryota,KOG0701@2759|Eukaryota
Descriptionribonuclease III activity
COG categoryK
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5236Gchil5236Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 112845..114494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5236.t1.stop1Gchil5236.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 112845..112847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5236.t1.CDS1Gchil5236.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 112845..114494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5236.t1.exon1Gchil5236.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 112845..114494 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5236.t1.start1Gchil5236.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 114492..114494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5236.t1Gchil5236.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 112845..114494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5236.t1 ID=Gchil5236.t1|Name=Gchil5236.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=550bp
MYSSTTATPTAPAAPTTPDPPHTPEAPAPLSLRPYQARILATTLHHNTLV
ILPTGAGKTLIAAETIRRLTPPAVLLVPTVLLVKQQSLALSNHMPHVVVA
QLHGGKNLNPHWQIIVSTPSAFRAAQCVDDALQWKHFNTVVFDEVHHLLK
NHPYRTLALDLNKTDAQPRVLGLTASFTYAVSMSESQQKLHNICQELCLS
AIETATQSELQRGGYHANCTLPLVPNQTVADACVPAGVLPPHLRQPHLML
ETFLQRCQDGSATVVACMTMAVVQAMETALSRQDAFETQVQSVPNIRRWS
SNAYRLAKQSKCARLKAMYEQLCHWYEALRTLVISWEEDDFACVGYLKMM
QCNHVYTFQRVWQSWPDVSRVIHHFWTHAPRTFTRLQVLKTVLLQQHHYH
GLDSGSTFRGIVFVQQRISTHILQHFIQTDAQLSKMFHVGCLYATSTSAS
PVLSVSKTQAASTLERFAKGSINVLIATSVAEEGMDIPAANCVIRFDMVH
STVSFVQGRGRARQQNSCFVVLKQREDRDSRLFVEVERQQMQLLRQRMA*
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spliced messenger RNA

>Gchil5236.t1 ID=Gchil5236.t1|Name=Gchil5236.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004418_pilon:112845..114494- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCCTCGACAACTGCCACCCCCACCGCACCCGCCGCTCCCACTAC
GCCCGATCCCCCCCACACGCCCGAGGCGCCCGCTCCGCTGTCGTTGCGCC
CCTACCAGGCGCGCATTCTCGCCACCACCCTGCACCACAACACCCTTGTC
ATCCTGCCCACCGGCGCAGGCAAGACACTCATCGCCGCCGAGACCATTCG
CCGCCTCACCCCGCCCGCCGTCCTGCTTGTCCCCACGGTACTTCTCGTCA
AACAACAGTCACTCGCCCTCTCCAATCACATGCCGCACGTCGTCGTCGCC
CAGCTGCACGGCGGAAAGAATCTCAATCCTCACTGGCAAATCATCGTCAG
CACACCCTCCGCCTTTCGTGCCGCCCAGTGCGTTGATGACGCCTTGCAGT
GGAAACATTTCAACACCGTTGTGTTTGATGAGGTTCATCACTTGTTGAAG
AACCATCCTTACAGAACGCTTGCCCTGGATTTGAACAAAACTGATGCCCA
ACCGCGCGTGCTCGGCCTCACCGCCTCCTTTACCTACGCCGTTAGCATGT
CCGAATCCCAACAAAAACTGCACAACATCTGTCAGGAGCTTTGTCTCAGC
GCCATTGAAACCGCCACGCAGAGCGAGCTCCAACGCGGTGGCTATCACGC
CAATTGCACCCTGCCCCTCGTACCAAACCAAACCGTTGCTGATGCCTGTG
TGCCTGCCGGCGTGTTACCGCCTCATCTCAGACAGCCTCACCTCATGCTC
GAAACCTTCCTGCAGCGATGCCAAGACGGATCGGCCACTGTCGTCGCCTG
CATGACCATGGCCGTTGTGCAAGCCATGGAAACCGCACTCAGTCGCCAAG
ATGCGTTTGAAACCCAAGTACAGAGCGTGCCCAACATTCGAAGGTGGAGT
TCCAATGCGTATCGACTCGCCAAACAAAGCAAATGCGCTCGTCTCAAAGC
CATGTATGAGCAGCTGTGTCACTGGTACGAAGCGCTCCGCACGCTGGTCA
TCAGCTGGGAAGAGGACGATTTCGCATGCGTGGGCTATTTGAAAATGATG
CAATGCAACCATGTGTACACTTTTCAGCGCGTGTGGCAAAGTTGGCCGGA
CGTGAGTCGCGTGATCCATCATTTTTGGACACACGCGCCCAGAACATTTA
CTCGTTTACAAGTGTTGAAAACCGTTTTGCTGCAACAACATCACTACCAC
GGGTTGGACAGCGGCAGCACGTTTCGAGGTATTGTTTTCGTTCAACAAAG
AATCAGCACCCACATTTTACAACATTTCATTCAGACGGACGCACAGCTTT
CAAAAATGTTTCACGTTGGATGTTTGTACGCAACGTCGACGTCGGCGTCT
CCGGTGCTGAGTGTTTCGAAGACGCAGGCAGCTTCAACGTTGGAGCGTTT
CGCAAAAGGGAGTATAAACGTTCTGATTGCCACAAGTGTAGCGGAAGAAG
GAATGGATATCCCTGCGGCAAATTGTGTGATCCGATTCGACATGGTTCAC
TCGACGGTTTCGTTTGTACAGGGAAGAGGAAGAGCAAGGCAGCAAAACAG
TTGCTTTGTGGTTTTGAAACAGAGGGAAGACCGCGACAGTAGACTGTTTG
TAGAGGTAGAGCGACAACAAATGCAGCTATTGAGACAACGCATGGCTTGA
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protein sequence of Gchil5236.t1

>Gchil5236.t1 ID=Gchil5236.t1|Name=Gchil5236.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=550bp
MYSSTTATPTAPAAPTTPDPPHTPEAPAPLSLRPYQARILATTLHHNTLV
ILPTGAGKTLIAAETIRRLTPPAVLLVPTVLLVKQQSLALSNHMPHVVVA
QLHGGKNLNPHWQIIVSTPSAFRAAQCVDDALQWKHFNTVVFDEVHHLLK
NHPYRTLALDLNKTDAQPRVLGLTASFTYAVSMSESQQKLHNICQELCLS
AIETATQSELQRGGYHANCTLPLVPNQTVADACVPAGVLPPHLRQPHLML
ETFLQRCQDGSATVVACMTMAVVQAMETALSRQDAFETQVQSVPNIRRWS
SNAYRLAKQSKCARLKAMYEQLCHWYEALRTLVISWEEDDFACVGYLKMM
QCNHVYTFQRVWQSWPDVSRVIHHFWTHAPRTFTRLQVLKTVLLQQHHYH
GLDSGSTFRGIVFVQQRISTHILQHFIQTDAQLSKMFHVGCLYATSTSAS
PVLSVSKTQAASTLERFAKGSINVLIATSVAEEGMDIPAANCVIRFDMVH
STVSFVQGRGRARQQNSCFVVLKQREDRDSRLFVEVERQQMQLLRQRMA*
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mRNA from alignment at tig00004418_pilon:112845..114494-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5236.t1 ID=Gchil5236.t1|Name=Gchil5236.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004418_pilon:112845..114494- (Gracilaria chilensis NLEC103_M9 male)
ATGTACTCCTCGACAACTGCCACCCCCACCGCACCCGCCGCTCCCACTAC
GCCCGATCCCCCCCACACGCCCGAGGCGCCCGCTCCGCTGTCGTTGCGCC
CCTACCAGGCGCGCATTCTCGCCACCACCCTGCACCACAACACCCTTGTC
ATCCTGCCCACCGGCGCAGGCAAGACACTCATCGCCGCCGAGACCATTCG
CCGCCTCACCCCGCCCGCCGTCCTGCTTGTCCCCACGGTACTTCTCGTCA
AACAACAGTCACTCGCCCTCTCCAATCACATGCCGCACGTCGTCGTCGCC
CAGCTGCACGGCGGAAAGAATCTCAATCCTCACTGGCAAATCATCGTCAG
CACACCCTCCGCCTTTCGTGCCGCCCAGTGCGTTGATGACGCCTTGCAGT
GGAAACATTTCAACACCGTTGTGTTTGATGAGGTTCATCACTTGTTGAAG
AACCATCCTTACAGAACGCTTGCCCTGGATTTGAACAAAACTGATGCCCA
ACCGCGCGTGCTCGGCCTCACCGCCTCCTTTACCTACGCCGTTAGCATGT
CCGAATCCCAACAAAAACTGCACAACATCTGTCAGGAGCTTTGTCTCAGC
GCCATTGAAACCGCCACGCAGAGCGAGCTCCAACGCGGTGGCTATCACGC
CAATTGCACCCTGCCCCTCGTACCAAACCAAACCGTTGCTGATGCCTGTG
TGCCTGCCGGCGTGTTACCGCCTCATCTCAGACAGCCTCACCTCATGCTC
GAAACCTTCCTGCAGCGATGCCAAGACGGATCGGCCACTGTCGTCGCCTG
CATGACCATGGCCGTTGTGCAAGCCATGGAAACCGCACTCAGTCGCCAAG
ATGCGTTTGAAACCCAAGTACAGAGCGTGCCCAACATTCGAAGGTGGAGT
TCCAATGCGTATCGACTCGCCAAACAAAGCAAATGCGCTCGTCTCAAAGC
CATGTATGAGCAGCTGTGTCACTGGTACGAAGCGCTCCGCACGCTGGTCA
TCAGCTGGGAAGAGGACGATTTCGCATGCGTGGGCTATTTGAAAATGATG
CAATGCAACCATGTGTACACTTTTCAGCGCGTGTGGCAAAGTTGGCCGGA
CGTGAGTCGCGTGATCCATCATTTTTGGACACACGCGCCCAGAACATTTA
CTCGTTTACAAGTGTTGAAAACCGTTTTGCTGCAACAACATCACTACCAC
GGGTTGGACAGCGGCAGCACGTTTCGAGGTATTGTTTTCGTTCAACAAAG
AATCAGCACCCACATTTTACAACATTTCATTCAGACGGACGCACAGCTTT
CAAAAATGTTTCACGTTGGATGTTTGTACGCAACGTCGACGTCGGCGTCT
CCGGTGCTGAGTGTTTCGAAGACGCAGGCAGCTTCAACGTTGGAGCGTTT
CGCAAAAGGGAGTATAAACGTTCTGATTGCCACAAGTGTAGCGGAAGAAG
GAATGGATATCCCTGCGGCAAATTGTGTGATCCGATTCGACATGGTTCAC
TCGACGGTTTCGTTTGTACAGGGAAGAGGAAGAGCAAGGCAGCAAAACAG
TTGCTTTGTGGTTTTGAAACAGAGGGAAGACCGCGACAGTAGACTGTTTG
TAGAGGTAGAGCGACAACAAATGCAGCTATTGAGACAACGCATGGCTTGA
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Coding sequence (CDS) from alignment at tig00004418_pilon:112845..114494-

>Gchil5236.t1 ID=Gchil5236.t1|Name=Gchil5236.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1650bp|location=Sequence derived from alignment at tig00004418_pilon:112845..114494- (Gracilaria chilensis NLEC103_M9 male)
ATGTACTCCTCGACAACTGCCACCCCCACCGCACCCGCCGCTCCCACTAC
GCCCGATCCCCCCCACACGCCCGAGGCGCCCGCTCCGCTGTCGTTGCGCC
CCTACCAGGCGCGCATTCTCGCCACCACCCTGCACCACAACACCCTTGTC
ATCCTGCCCACCGGCGCAGGCAAGACACTCATCGCCGCCGAGACCATTCG
CCGCCTCACCCCGCCCGCCGTCCTGCTTGTCCCCACGGTACTTCTCGTCA
AACAACAGTCACTCGCCCTCTCCAATCACATGCCGCACGTCGTCGTCGCC
CAGCTGCACGGCGGAAAGAATCTCAATCCTCACTGGCAAATCATCGTCAG
CACACCCTCCGCCTTTCGTGCCGCCCAGTGCGTTGATGACGCCTTGCAGT
GGAAACATTTCAACACCGTTGTGTTTGATGAGGTTCATCACTTGTTGAAG
AACCATCCTTACAGAACGCTTGCCCTGGATTTGAACAAAACTGATGCCCA
ACCGCGCGTGCTCGGCCTCACCGCCTCCTTTACCTACGCCGTTAGCATGT
CCGAATCCCAACAAAAACTGCACAACATCTGTCAGGAGCTTTGTCTCAGC
GCCATTGAAACCGCCACGCAGAGCGAGCTCCAACGCGGTGGCTATCACGC
CAATTGCACCCTGCCCCTCGTACCAAACCAAACCGTTGCTGATGCCTGTG
TGCCTGCCGGCGTGTTACCGCCTCATCTCAGACAGCCTCACCTCATGCTC
GAAACCTTCCTGCAGCGATGCCAAGACGGATCGGCCACTGTCGTCGCCTG
CATGACCATGGCCGTTGTGCAAGCCATGGAAACCGCACTCAGTCGCCAAG
ATGCGTTTGAAACCCAAGTACAGAGCGTGCCCAACATTCGAAGGTGGAGT
TCCAATGCGTATCGACTCGCCAAACAAAGCAAATGCGCTCGTCTCAAAGC
CATGTATGAGCAGCTGTGTCACTGGTACGAAGCGCTCCGCACGCTGGTCA
TCAGCTGGGAAGAGGACGATTTCGCATGCGTGGGCTATTTGAAAATGATG
CAATGCAACCATGTGTACACTTTTCAGCGCGTGTGGCAAAGTTGGCCGGA
CGTGAGTCGCGTGATCCATCATTTTTGGACACACGCGCCCAGAACATTTA
CTCGTTTACAAGTGTTGAAAACCGTTTTGCTGCAACAACATCACTACCAC
GGGTTGGACAGCGGCAGCACGTTTCGAGGTATTGTTTTCGTTCAACAAAG
AATCAGCACCCACATTTTACAACATTTCATTCAGACGGACGCACAGCTTT
CAAAAATGTTTCACGTTGGATGTTTGTACGCAACGTCGACGTCGGCGTCT
CCGGTGCTGAGTGTTTCGAAGACGCAGGCAGCTTCAACGTTGGAGCGTTT
CGCAAAAGGGAGTATAAACGTTCTGATTGCCACAAGTGTAGCGGAAGAAG
GAATGGATATCCCTGCGGCAAATTGTGTGATCCGATTCGACATGGTTCAC
TCGACGGTTTCGTTTGTACAGGGAAGAGGAAGAGCAAGGCAGCAAAACAG
TTGCTTTGTGGTTTTGAAACAGAGGGAAGACCGCGACAGTAGACTGTTTG
TAGAGGTAGAGCGACAACAAATGCAGCTATTGAGACAACGCATGGCTTGA
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