Gchil5048.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5048.t1
Unique Name	Gchil5048.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004393_pilon	contig	tig00004393_pilon:2360071..2361369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	698440.XP_007288586.1
PFAMs	Methyltransf_10
Max annot lvl	4751\|Fungi
KEGG rclass	RC00003,RC00335
KEGG ko	ko:K06970,ko:K11393
KEGG Reaction	R07232
GOs	GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0008988,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016073,GO:0016433,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0040031,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0052907,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0120048,GO:0120049,GO:0140098,GO:0140102,GO:1901360
Evalue	2.28e-38
EggNOG OGs	COG3129@1\|root,KOG2912@2759\|Eukaryota,38CXU@33154\|Opisthokonta,3NZIZ@4751\|Fungi,3QQFS@4890\|Ascomycota,20XRU@147548\|Leotiomycetes
EC	2.1.1.181
Description	Protein of unknown function (DUF890)
COG category	J
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5048	Gchil5048	Gracilaria chilensis NLEC103_M9 male	gene	tig00004393_pilon 2360071..2361369 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5048.t1.start1	Gchil5048.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004393_pilon 2360071..2360073 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5048.t1.CDS1	Gchil5048.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004393_pilon 2360071..2361369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5048.t1.exon1	Gchil5048.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004393_pilon 2360071..2361369 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5048.t1.stop1	Gchil5048.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004393_pilon 2361367..2361369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5048.t1	Gchil5048.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004393_pilon 2360071..2361369 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004393_pilon:2360071..2361369+
coding sequence from alignment at tig00004393_pilon:2360071..2361369+

mRNA sequence

>Gchil5048.t1 ID=Gchil5048.t1|Name=Gchil5048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=433bp
MKRARRKQASNAKKRGRWLQADSSVPDAPHYDFEPLIDADKELGKHAISV
NGHRTIDFSSREATYQLTRGILRHHFKLELWLPKGHLVPTIPNRVQYLRW
AAALLPKECERQDMVVLDIGTGASCIYAMLGTRLFPQWRFVGTDTDAQAI
ESARHNCHVNALHNISIVKTRSEDKLFCDAVRKLSPSLTVCNPPFHAQAH
DGDDAPGTVAQLVTAGGEYQLLSKLAAESVSVPSVEWFSSLIGRKQDVGR
VIDVLRSDAIRATRIKWAELCAGGRTTRWAVAWSFGEACTTVTLARDERR
RWRHDIVVRPSRKFANQLHVRDIAGVLRAAFRSLQWREGAEGAESAEGAE
SAEGTKWSVRGAEGRRHERCELEVFVRRRGEGGAEFVALVKVHNRGALRD
EHDVREACARVSERTQQMLSELEKTEEAEEEK*

spliced messenger RNA

>Gchil5048.t1 ID=Gchil5048.t1|Name=Gchil5048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00004393_pilon:2360071..2361369+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGAGCGCGGCGCAAGCAAGCAAGCAACGCAAAGAAACGGGGAAG
GTGGTTGCAAGCTGACAGCAGCGTGCCAGACGCGCCTCACTACGACTTTG
AGCCACTGATCGACGCGGACAAGGAGCTGGGCAAGCATGCGATCAGCGTG
AACGGGCATCGCACGATCGACTTTTCCAGTCGCGAGGCAACGTATCAGCT
GACGCGCGGCATCCTACGGCACCACTTCAAGCTTGAGCTATGGCTGCCCA
AGGGGCATTTGGTTCCGACGATTCCGAACCGCGTGCAGTACCTGCGGTGG
GCTGCGGCGCTGTTACCAAAGGAATGCGAGCGACAAGACATGGTGGTGCT
GGACATTGGCACGGGTGCGTCGTGCATCTACGCCATGCTAGGAACGCGTC
TGTTTCCGCAGTGGCGGTTTGTGGGGACAGACACGGACGCACAGGCGATT
GAAAGCGCAAGACACAACTGCCACGTGAACGCGCTGCACAACATAAGCAT
CGTGAAGACGCGAAGCGAGGACAAGTTATTCTGCGACGCGGTGCGAAAGC
TATCGCCGTCGCTAACGGTATGCAACCCGCCGTTCCACGCACAGGCGCAC
GACGGGGACGACGCGCCCGGGACGGTGGCGCAGCTGGTGACTGCGGGCGG
GGAGTACCAGCTGTTAAGCAAGCTGGCGGCGGAATCGGTGAGCGTGCCCA
GCGTTGAGTGGTTCAGCAGTTTGATCGGGCGCAAGCAGGACGTGGGTAGG
GTGATAGATGTGTTGCGGTCGGATGCAATTCGGGCGACTCGCATCAAGTG
GGCGGAGCTGTGCGCAGGCGGACGGACGACTCGGTGGGCCGTGGCGTGGT
CGTTTGGCGAGGCGTGCACAACGGTGACATTGGCAAGGGACGAGAGGCGG
CGGTGGCGGCATGACATAGTGGTGCGCCCCAGCAGAAAGTTTGCAAACCA
GCTTCACGTGCGCGATATTGCCGGCGTGCTTCGCGCAGCGTTTCGCAGCC
TGCAATggcgcgagggcgcggagggcgcggagagcgcggagggcgcggag
agcgcggagggcACAAAGTGGAGCGTGCGCGGCGCGGAGGGCCGGCGACA
CGAGCGGTGCGAGCTGGAGGTGTTTGTAAGGCGGCGCGGCGAGGGCGGCG
CAGAGTTCGTGGCGCTCGTCAAGGTGCACAACAGGGGCGCGCTCCGCGAC
GAACACGACGTGAGGGAAGCGTGCGCCCGCGTGAGCGAGCGCACGCAGCA
AATGCTAAGCGAGCTAgagaagacggaggaggcggaggaggagAAATGA

protein sequence of Gchil5048.t1

>Gchil5048.t1 ID=Gchil5048.t1|Name=Gchil5048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=433bp
MKRARRKQASNAKKRGRWLQADSSVPDAPHYDFEPLIDADKELGKHAISV
NGHRTIDFSSREATYQLTRGILRHHFKLELWLPKGHLVPTIPNRVQYLRW
AAALLPKECERQDMVVLDIGTGASCIYAMLGTRLFPQWRFVGTDTDAQAI
ESARHNCHVNALHNISIVKTRSEDKLFCDAVRKLSPSLTVCNPPFHAQAH
DGDDAPGTVAQLVTAGGEYQLLSKLAAESVSVPSVEWFSSLIGRKQDVGR
VIDVLRSDAIRATRIKWAELCAGGRTTRWAVAWSFGEACTTVTLARDERR
RWRHDIVVRPSRKFANQLHVRDIAGVLRAAFRSLQWREGAEGAESAEGAE
SAEGTKWSVRGAEGRRHERCELEVFVRRRGEGGAEFVALVKVHNRGALRD
EHDVREACARVSERTQQMLSELEKTEEAEEEK*

mRNA from alignment at tig00004393_pilon:2360071..2361369+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5048.t1 ID=Gchil5048.t1|Name=Gchil5048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00004393_pilon:2360071..2361369+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGAGCGCGGCGCAAGCAAGCAAGCAACGCAAAGAAACGGGGAAG
GTGGTTGCAAGCTGACAGCAGCGTGCCAGACGCGCCTCACTACGACTTTG
AGCCACTGATCGACGCGGACAAGGAGCTGGGCAAGCATGCGATCAGCGTG
AACGGGCATCGCACGATCGACTTTTCCAGTCGCGAGGCAACGTATCAGCT
GACGCGCGGCATCCTACGGCACCACTTCAAGCTTGAGCTATGGCTGCCCA
AGGGGCATTTGGTTCCGACGATTCCGAACCGCGTGCAGTACCTGCGGTGG
GCTGCGGCGCTGTTACCAAAGGAATGCGAGCGACAAGACATGGTGGTGCT
GGACATTGGCACGGGTGCGTCGTGCATCTACGCCATGCTAGGAACGCGTC
TGTTTCCGCAGTGGCGGTTTGTGGGGACAGACACGGACGCACAGGCGATT
GAAAGCGCAAGACACAACTGCCACGTGAACGCGCTGCACAACATAAGCAT
CGTGAAGACGCGAAGCGAGGACAAGTTATTCTGCGACGCGGTGCGAAAGC
TATCGCCGTCGCTAACGGTATGCAACCCGCCGTTCCACGCACAGGCGCAC
GACGGGGACGACGCGCCCGGGACGGTGGCGCAGCTGGTGACTGCGGGCGG
GGAGTACCAGCTGTTAAGCAAGCTGGCGGCGGAATCGGTGAGCGTGCCCA
GCGTTGAGTGGTTCAGCAGTTTGATCGGGCGCAAGCAGGACGTGGGTAGG
GTGATAGATGTGTTGCGGTCGGATGCAATTCGGGCGACTCGCATCAAGTG
GGCGGAGCTGTGCGCAGGCGGACGGACGACTCGGTGGGCCGTGGCGTGGT
CGTTTGGCGAGGCGTGCACAACGGTGACATTGGCAAGGGACGAGAGGCGG
CGGTGGCGGCATGACATAGTGGTGCGCCCCAGCAGAAAGTTTGCAAACCA
GCTTCACGTGCGCGATATTGCCGGCGTGCTTCGCGCAGCGTTTCGCAGCC
TGCAATggcgcgagggcgcggagggcgcggagagcgcggagggcgcggag
agcgcggagggcACAAAGTGGAGCGTGCGCGGCGCGGAGGGCCGGCGACA
CGAGCGGTGCGAGCTGGAGGTGTTTGTAAGGCGGCGCGGCGAGGGCGGCG
CAGAGTTCGTGGCGCTCGTCAAGGTGCACAACAGGGGCGCGCTCCGCGAC
GAACACGACGTGAGGGAAGCGTGCGCCCGCGTGAGCGAGCGCACGCAGCA
AATGCTAAGCGAGCTAgagaagacggaggaggcggaggaggagAAATGA

Coding sequence (CDS) from alignment at tig00004393_pilon:2360071..2361369+

>Gchil5048.t1 ID=Gchil5048.t1|Name=Gchil5048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1299bp|location=Sequence derived from alignment at tig00004393_pilon:2360071..2361369+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGAGCGCGGCGCAAGCAAGCAAGCAACGCAAAGAAACGGGGAAG
GTGGTTGCAAGCTGACAGCAGCGTGCCAGACGCGCCTCACTACGACTTTG
AGCCACTGATCGACGCGGACAAGGAGCTGGGCAAGCATGCGATCAGCGTG
AACGGGCATCGCACGATCGACTTTTCCAGTCGCGAGGCAACGTATCAGCT
GACGCGCGGCATCCTACGGCACCACTTCAAGCTTGAGCTATGGCTGCCCA
AGGGGCATTTGGTTCCGACGATTCCGAACCGCGTGCAGTACCTGCGGTGG
GCTGCGGCGCTGTTACCAAAGGAATGCGAGCGACAAGACATGGTGGTGCT
GGACATTGGCACGGGTGCGTCGTGCATCTACGCCATGCTAGGAACGCGTC
TGTTTCCGCAGTGGCGGTTTGTGGGGACAGACACGGACGCACAGGCGATT
GAAAGCGCAAGACACAACTGCCACGTGAACGCGCTGCACAACATAAGCAT
CGTGAAGACGCGAAGCGAGGACAAGTTATTCTGCGACGCGGTGCGAAAGC
TATCGCCGTCGCTAACGGTATGCAACCCGCCGTTCCACGCACAGGCGCAC
GACGGGGACGACGCGCCCGGGACGGTGGCGCAGCTGGTGACTGCGGGCGG
GGAGTACCAGCTGTTAAGCAAGCTGGCGGCGGAATCGGTGAGCGTGCCCA
GCGTTGAGTGGTTCAGCAGTTTGATCGGGCGCAAGCAGGACGTGGGTAGG
GTGATAGATGTGTTGCGGTCGGATGCAATTCGGGCGACTCGCATCAAGTG
GGCGGAGCTGTGCGCAGGCGGACGGACGACTCGGTGGGCCGTGGCGTGGT
CGTTTGGCGAGGCGTGCACAACGGTGACATTGGCAAGGGACGAGAGGCGG
CGGTGGCGGCATGACATAGTGGTGCGCCCCAGCAGAAAGTTTGCAAACCA
GCTTCACGTGCGCGATATTGCCGGCGTGCTTCGCGCAGCGTTTCGCAGCC
TGCAATggcgcgagggcgcggagggcgcggagagcgcggagggcgcggag
agcgcggagggcACAAAGTGGAGCGTGCGCGGCGCGGAGGGCCGGCGACA
CGAGCGGTGCGAGCTGGAGGTGTTTGTAAGGCGGCGCGGCGAGGGCGGCG
CAGAGTTCGTGGCGCTCGTCAAGGTGCACAACAGGGGCGCGCTCCGCGAC
GAACACGACGTGAGGGAAGCGTGCGCCCGCGTGAGCGAGCGCACGCAGCA
AATGCTAAGCGAGCTAgagaagacggaggaggcggaggaggagAAATGA