Gchil4993.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4993.t1
Unique NameGchil4993.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:1922315..1923400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog488538.SAR116_2272
Preferred nameyfiC
PFAMsMTS
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K15460
Evalue3.34e-15
EggNOG OGsCOG4123@1|root,COG4123@2|Bacteria,1MXEQ@1224|Proteobacteria,2TUBR@28211|Alphaproteobacteria,4BQP0@82117|unclassified Alphaproteobacteria
EC2.1.1.223
DescriptionMethyltransferase small domain
COG categoryS
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4993Gchil4993Gracilaria chilensis NLEC103_M9 malegenetig00004393_pilon 1922315..1923400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4993.t1Gchil4993.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004393_pilon 1922315..1923400 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4993.t1.start1Gchil4993.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004393_pilon 1922315..1922317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4993.t1.CDS1Gchil4993.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 1922315..1923106 +
Gchil4993.t1.CDS2Gchil4993.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 1923200..1923400 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4993.t1.exon1Gchil4993.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 1922315..1923106 +
Gchil4993.t1.exon2Gchil4993.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 1923200..1923400 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4993.t1.intron1Gchil4993.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004393_pilon 1923107..1923199 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4993.t1.stop1Gchil4993.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004393_pilon 1923398..1923400 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4993.t1 ID=Gchil4993.t1|Name=Gchil4993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=331bp
MLSRKALGTALVKFRRRHILAFEEICPRTVCLARTYNCVNISTAGRRYGF
TRRRSDYWDQKDIDSLPQHLRPHSDETLDLILRQKVYLLQARRGYRVNTD
AHILAYFASTAYRKLPGARTRRPLRVLDLGSGVGLVSMLFAKAHNPCLLT
LIENQTQLVHRARRNLELNDINGNVLQHDLKNGTLPSSVQGVFDVVLMNP
PFYALNGNRKPPTNREKFLSHMETSASFSHFISAASAACDPQNHDAFVAV
IHDVQELTRIRKAIIAAQISAQPTLDNGTNPPEPKPTTAIRKQIILHPGG
TNYKAYNPDIERFFEDLPRSKLSIGRIKQY*
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spliced messenger RNA

>Gchil4993.t1 ID=Gchil4993.t1|Name=Gchil4993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00004393_pilon:1922315..1923400+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCGAGGAAAGCACTTGGCACGGCTTTGGTGAAATTCAGACGTCG
TCATATTCTCGCTTTTGAAGAGATTTGTCCAAGAACTGTATGTTTAGCCC
GAACATACAACTGCGTCAATATTTCAACCGCTGGTAGAAGATATGGATTC
ACGAGGCGGCGCTCCGACTACTGGGACCAGAAGGATATTGACTCTTTACC
ACAGCATCTCCGGCCTCATTCGGATGAAACTCTTGACCTCATCCTGCGCC
AGAAAGTCTACCTACTTCAAGCTAGAAGAGGATACAGAGTCAACACGGAT
GCTCATATCCTTGCGTACTTTGCGTCCACGGCATACAGAAAGTTACCTGG
CGCACGCACCAGAAGGCCACTACGAGTGCTGGATCTCGGATCTGGAGTTG
GTCTTGTCTCTATGCTCTTCGCAAAGGCGCACAATCCCTGTTTACTGACC
TTGATCGAAAACCAAACGCAGTTGGTGCACCGCGCCAGGCGAAATCTGGA
ATTAAACGATATCAATGGAAATGTGTTGCAACATGATCTGAAGAATGGAA
CGCTTCCTTCTTCTGTGCAGGGTGTGTTTGATGTTGTTCTGATGAATCCG
CCGTTTTACGCTCTCAATGGCAACAGGAAACCCCCTACCAATCGAGAGAA
GTTTCTCTCTCACATGGAAACAAGCGCATCCTTCTCCCATTTCATTTCAG
CTGCCTCAGCGGCCTGTGACCCACAAAACCATGATGCGTTTGTGGCCGTT
ATTCATGATGTACAAGAGCTTACACGCATTCGAAAGGCCATAATTGCCGC
ACAGATCTCGGCCCAACCTACTCTGGACAACGGAACAAACCCACCAGAAC
CCAAACCGACCACTGCTATTAGAAAGCAAATCATTCTTCATCCAGGTGGA
ACCAATTACAAGGCGTATAATCCAGACATAGAACGATTCTTTGAAGATCT
TCCGAGATCAAAATTAAGCATAGGACGAATCAAACAATACTGA
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protein sequence of Gchil4993.t1

>Gchil4993.t1 ID=Gchil4993.t1|Name=Gchil4993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=331bp
MLSRKALGTALVKFRRRHILAFEEICPRTVCLARTYNCVNISTAGRRYGF
TRRRSDYWDQKDIDSLPQHLRPHSDETLDLILRQKVYLLQARRGYRVNTD
AHILAYFASTAYRKLPGARTRRPLRVLDLGSGVGLVSMLFAKAHNPCLLT
LIENQTQLVHRARRNLELNDINGNVLQHDLKNGTLPSSVQGVFDVVLMNP
PFYALNGNRKPPTNREKFLSHMETSASFSHFISAASAACDPQNHDAFVAV
IHDVQELTRIRKAIIAAQISAQPTLDNGTNPPEPKPTTAIRKQIILHPGG
TNYKAYNPDIERFFEDLPRSKLSIGRIKQY*
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mRNA from alignment at tig00004393_pilon:1922315..1923400+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4993.t1 ID=Gchil4993.t1|Name=Gchil4993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00004393_pilon:1922315..1923400+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTCGAGGAAAGCACTTGGCACGGCTTTGGTGAAATTCAGACGTCG
TCATATTCTCGCTTTTGAAGAGATTTGTCCAAGAACTGTATGTTTAGCCC
GAACATACAACTGCGTCAATATTTCAACCGCTGGTAGAAGATATGGATTC
ACGAGGCGGCGCTCCGACTACTGGGACCAGAAGGATATTGACTCTTTACC
ACAGCATCTCCGGCCTCATTCGGATGAAACTCTTGACCTCATCCTGCGCC
AGAAAGTCTACCTACTTCAAGCTAGAAGAGGATACAGAGTCAACACGGAT
GCTCATATCCTTGCGTACTTTGCGTCCACGGCATACAGAAAGTTACCTGG
CGCACGCACCAGAAGGCCACTACGAGTGCTGGATCTCGGATCTGGAGTTG
GTCTTGTCTCTATGCTCTTCGCAAAGGCGCACAATCCCTGTTTACTGACC
TTGATCGAAAACCAAACGCAGTTGGTGCACCGCGCCAGGCGAAATCTGGA
ATTAAACGATATCAATGGAAATGTGTTGCAACATGATCTGAAGAATGGAA
CGCTTCCTTCTTCTGTGCAGGGTGTGTTTGATGTTGTTCTGATGAATCCG
CCGTTTTACGCTCTCAATGGCAACAGGAAACCCCCTACCAATCGAGAGAA
GTTTCTCTCTCACATGGAAACAAGCGCATCCTTCTCCCATTTCATTTCAG
CTGCCTCAGCGGCCTGTGACCCACAAAACCATGATGCGTTTGTGGCCGTT
ATTCATGATGTACAAGAGCTTACACGCATTCGAAAGGCCATAGTACGTTC
CCGATTACACATACATGAGCATCAATTTTTATGCCATGTTCCTGGAAACG
CACCCTCTAGGGTCCTATTGGACCTTAAACCACAGATTGCCGCACAGATC
TCGGCCCAACCTACTCTGGACAACGGAACAAACCCACCAGAACCCAAACC
GACCACTGCTATTAGAAAGCAAATCATTCTTCATCCAGGTGGAACCAATT
ACAAGGCGTATAATCCAGACATAGAACGATTCTTTGAAGATCTTCCGAGA
TCAAAATTAAGCATAGGACGAATCAAACAATACTGA
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Coding sequence (CDS) from alignment at tig00004393_pilon:1922315..1923400+

>Gchil4993.t1 ID=Gchil4993.t1|Name=Gchil4993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00004393_pilon:1922315..1923400+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTCGAGGAAAGCACTTGGCACGGCTTTGGTGAAATTCAGACGTCG
TCATATTCTCGCTTTTGAAGAGATTTGTCCAAGAACTGTATGTTTAGCCC
GAACATACAACTGCGTCAATATTTCAACCGCTGGTAGAAGATATGGATTC
ACGAGGCGGCGCTCCGACTACTGGGACCAGAAGGATATTGACTCTTTACC
ACAGCATCTCCGGCCTCATTCGGATGAAACTCTTGACCTCATCCTGCGCC
AGAAAGTCTACCTACTTCAAGCTAGAAGAGGATACAGAGTCAACACGGAT
GCTCATATCCTTGCGTACTTTGCGTCCACGGCATACAGAAAGTTACCTGG
CGCACGCACCAGAAGGCCACTACGAGTGCTGGATCTCGGATCTGGAGTTG
GTCTTGTCTCTATGCTCTTCGCAAAGGCGCACAATCCCTGTTTACTGACC
TTGATCGAAAACCAAACGCAGTTGGTGCACCGCGCCAGGCGAAATCTGGA
ATTAAACGATATCAATGGAAATGTGTTGCAACATGATCTGAAGAATGGAA
CGCTTCCTTCTTCTGTGCAGGGTGTGTTTGATGTTGTTCTGATGAATCCG
CCGTTTTACGCTCTCAATGGCAACAGGAAACCCCCTACCAATCGAGAGAA
GTTTCTCTCTCACATGGAAACAAGCGCATCCTTCTCCCATTTCATTTCAG
CTGCCTCAGCGGCCTGTGACCCACAAAACCATGATGCGTTTGTGGCCGTT
ATTCATGATGTACAAGAGCTTACACGCATTCGAAAGGCCATAATTGCCGC
ACAGATCTCGGCCCAACCTACTCTGGACAACGGAACAAACCCACCAGAAC
CCAAACCGACCACTGCTATTAGAAAGCAAATCATTCTTCATCCAGGTGGA
ACCAATTACAAGGCGTATAATCCAGACATAGAACGATTCTTTGAAGATCT
TCCGAGATCAAAATTAAGCATAGGACGAATCAAACAATACTGA
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