Gchil4849.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4849.t1
Unique NameGchil4849.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004393_piloncontigtig00004393_pilon:1071875..1072903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703841.1
Preferred namecit-1.2
PFAMsBTB,Cyclin_C,Cyclin_N
Max annot lvl2759|Eukaryota
KEGG koko:K15188
KEGG Pathwayko05202,map05202
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue5e-54
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
COG categoryDKL
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4849Gchil4849Gracilaria chilensis NLEC103_M9 malegenetig00004393_pilon 1071875..1072903 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4849.t1.stop1Gchil4849.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004393_pilon 1071875..1071877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4849.t1.CDS1Gchil4849.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004393_pilon 1071875..1072903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4849.t1.exon1Gchil4849.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004393_pilon 1071875..1072903 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4849.t1.start1Gchil4849.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004393_pilon 1072901..1072903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4849.t1Gchil4849.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004393_pilon 1071875..1072903 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4849.t1 ID=Gchil4849.t1|Name=Gchil4849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=343bp
MSRPHNLSQDDSRRGIKRPNQHIGGECSPVQTSEDNSWLFTEEEVTETPS
RVQGLPEHVELKVIAKTAQFIQECGRELQVPQLTMSVAVKFFQRFFMLES
MLNHPPPLVAAACLFLSCKVQETHKRLKDIIYWTVKVRTRNTKDFPEGMD
LFENSPGYYEEKNNILDKEREVLRVLNFDLTVDHPYKHLWTLTKSYLGND
QVQKSITQAGWNFLNDSFRTYLHVRYDAKEVATAAFFMSSKLHNHPLPDG
TTRERATGKRILAWYEFFKTNLSRVEEICKILLDMYELEDKASNLFKNGT
GVLDSIPDNRPTKRQKTEAVKLESTPIENDSRTRIEPYTAYR*
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spliced messenger RNA

>Gchil4849.t1 ID=Gchil4849.t1|Name=Gchil4849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00004393_pilon:1071875..1072903- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGGCCACACAATCTTTCTCAGGATGACTCCAGGCGGGGAATCAA
GCGCCCGAATCAGCATATCGGTGGGGAATGTTCCCCCGTCCAGACTTCGG
AAGATAATTCCTGGCTCTTTACTGAGGAGGAGGTGACGGAAACTCCCTCC
CGGGTACAGGGCCTTCCCGAGCATGTCGAACTCAAAGTTATAGCTAAAAC
CGCACAATTCATTCAAGAATGCGGACGCGAGCTTCAAGTCCCACAACTCA
CAATGTCTGTCGCCGTCAAATTCTTCCAGCGTTTTTTTATGTTGGAAAGT
ATGCTCAATCATCCTCCTCCGCTTGTAGCCGCCGCTTGTCTTTTTCTTTC
CTGCAAGGTACAAGAGACTCACAAACGTCTCAAGGATATTATCTATTGGA
CAGTAAAAGTTCGAACGAGAAACACAAAGGATTTTCCTGAAGGAATGGAT
TTGTTTGAGAATTCACCAGGGTATTACGAAGAGAAGAACAACATTCTCGA
CAAGGAACGTGAAGTGCTGCGCGTTCTTAACTTTGATCTCACAGTTGACC
ATCCGTACAAGCATTTATGGACTCTGACAAAGTCGTATCTCGGGAATGAC
CAAGTCCAAAAATCGATCACCCAAGCCGGTTGGAATTTCTTGAATGATTC
CTTTCGAACCTATCTTCATGTTCGGTACGATGCGAAAGAGGTCGCCACAG
CAGCATTCTTCATGTCATCAAAACTTCACAATCATCCACTACCAGACGGC
ACAACCAGGGAACGAGCAACAGGCAAGCGGATCCTCGCTTGGTACGAGTT
CTTTAAGACCAATCTTAGTCGCGTTGAAGAGATTTGTAAGATTCTCCTTG
ACATGTACGAACTTGAAGATAAGGCCTCCAATTTGTTTAAGAATGGGACT
GGAGTATTGGATTCTATCCCCGACAATCGCCCTACAAAACGTCAGAAGAC
CGAGGCGGTCAAACTAGAATCCACTCCGATTGAGAACGATTCTCGAACAC
GAATCGAGCCATACACCGCATATCGTTAA
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protein sequence of Gchil4849.t1

>Gchil4849.t1 ID=Gchil4849.t1|Name=Gchil4849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=343bp
MSRPHNLSQDDSRRGIKRPNQHIGGECSPVQTSEDNSWLFTEEEVTETPS
RVQGLPEHVELKVIAKTAQFIQECGRELQVPQLTMSVAVKFFQRFFMLES
MLNHPPPLVAAACLFLSCKVQETHKRLKDIIYWTVKVRTRNTKDFPEGMD
LFENSPGYYEEKNNILDKEREVLRVLNFDLTVDHPYKHLWTLTKSYLGND
QVQKSITQAGWNFLNDSFRTYLHVRYDAKEVATAAFFMSSKLHNHPLPDG
TTRERATGKRILAWYEFFKTNLSRVEEICKILLDMYELEDKASNLFKNGT
GVLDSIPDNRPTKRQKTEAVKLESTPIENDSRTRIEPYTAYR*
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mRNA from alignment at tig00004393_pilon:1071875..1072903-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4849.t1 ID=Gchil4849.t1|Name=Gchil4849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00004393_pilon:1071875..1072903- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGGCCACACAATCTTTCTCAGGATGACTCCAGGCGGGGAATCAA
GCGCCCGAATCAGCATATCGGTGGGGAATGTTCCCCCGTCCAGACTTCGG
AAGATAATTCCTGGCTCTTTACTGAGGAGGAGGTGACGGAAACTCCCTCC
CGGGTACAGGGCCTTCCCGAGCATGTCGAACTCAAAGTTATAGCTAAAAC
CGCACAATTCATTCAAGAATGCGGACGCGAGCTTCAAGTCCCACAACTCA
CAATGTCTGTCGCCGTCAAATTCTTCCAGCGTTTTTTTATGTTGGAAAGT
ATGCTCAATCATCCTCCTCCGCTTGTAGCCGCCGCTTGTCTTTTTCTTTC
CTGCAAGGTACAAGAGACTCACAAACGTCTCAAGGATATTATCTATTGGA
CAGTAAAAGTTCGAACGAGAAACACAAAGGATTTTCCTGAAGGAATGGAT
TTGTTTGAGAATTCACCAGGGTATTACGAAGAGAAGAACAACATTCTCGA
CAAGGAACGTGAAGTGCTGCGCGTTCTTAACTTTGATCTCACAGTTGACC
ATCCGTACAAGCATTTATGGACTCTGACAAAGTCGTATCTCGGGAATGAC
CAAGTCCAAAAATCGATCACCCAAGCCGGTTGGAATTTCTTGAATGATTC
CTTTCGAACCTATCTTCATGTTCGGTACGATGCGAAAGAGGTCGCCACAG
CAGCATTCTTCATGTCATCAAAACTTCACAATCATCCACTACCAGACGGC
ACAACCAGGGAACGAGCAACAGGCAAGCGGATCCTCGCTTGGTACGAGTT
CTTTAAGACCAATCTTAGTCGCGTTGAAGAGATTTGTAAGATTCTCCTTG
ACATGTACGAACTTGAAGATAAGGCCTCCAATTTGTTTAAGAATGGGACT
GGAGTATTGGATTCTATCCCCGACAATCGCCCTACAAAACGTCAGAAGAC
CGAGGCGGTCAAACTAGAATCCACTCCGATTGAGAACGATTCTCGAACAC
GAATCGAGCCATACACCGCATATCGTTAA
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Coding sequence (CDS) from alignment at tig00004393_pilon:1071875..1072903-

>Gchil4849.t1 ID=Gchil4849.t1|Name=Gchil4849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00004393_pilon:1071875..1072903- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGGCCACACAATCTTTCTCAGGATGACTCCAGGCGGGGAATCAA
GCGCCCGAATCAGCATATCGGTGGGGAATGTTCCCCCGTCCAGACTTCGG
AAGATAATTCCTGGCTCTTTACTGAGGAGGAGGTGACGGAAACTCCCTCC
CGGGTACAGGGCCTTCCCGAGCATGTCGAACTCAAAGTTATAGCTAAAAC
CGCACAATTCATTCAAGAATGCGGACGCGAGCTTCAAGTCCCACAACTCA
CAATGTCTGTCGCCGTCAAATTCTTCCAGCGTTTTTTTATGTTGGAAAGT
ATGCTCAATCATCCTCCTCCGCTTGTAGCCGCCGCTTGTCTTTTTCTTTC
CTGCAAGGTACAAGAGACTCACAAACGTCTCAAGGATATTATCTATTGGA
CAGTAAAAGTTCGAACGAGAAACACAAAGGATTTTCCTGAAGGAATGGAT
TTGTTTGAGAATTCACCAGGGTATTACGAAGAGAAGAACAACATTCTCGA
CAAGGAACGTGAAGTGCTGCGCGTTCTTAACTTTGATCTCACAGTTGACC
ATCCGTACAAGCATTTATGGACTCTGACAAAGTCGTATCTCGGGAATGAC
CAAGTCCAAAAATCGATCACCCAAGCCGGTTGGAATTTCTTGAATGATTC
CTTTCGAACCTATCTTCATGTTCGGTACGATGCGAAAGAGGTCGCCACAG
CAGCATTCTTCATGTCATCAAAACTTCACAATCATCCACTACCAGACGGC
ACAACCAGGGAACGAGCAACAGGCAAGCGGATCCTCGCTTGGTACGAGTT
CTTTAAGACCAATCTTAGTCGCGTTGAAGAGATTTGTAAGATTCTCCTTG
ACATGTACGAACTTGAAGATAAGGCCTCCAATTTGTTTAAGAATGGGACT
GGAGTATTGGATTCTATCCCCGACAATCGCCCTACAAAACGTCAGAAGAC
CGAGGCGGTCAAACTAGAATCCACTCCGATTGAGAACGATTCTCGAACAC
GAATCGAGCCATACACCGCATATCGTTAA
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